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2021-10-27gnu: python-aiohttp: Sort inputs alphabetically.Efraim Flashner
* gnu/packages/python-web.scm (python-aiohttp)[native-inputs]: Sort inputs alphabetically.
2021-10-27gnu: python-aiohttp: Fix test suite.Efraim Flashner
* gnu/packages/python-web.scm (python-aiohttp)[arguments]: Adjust custom 'check phase to not load uninstalled code. [native-inputs]: Replace python-pytest with python-pytest-6.1.
2021-10-27gnu: Add python-pytest-6.1.Efraim Flashner
* gnu/packages/check.scm (python-pytest-6.1): New variable.
2021-10-27gnu: python-pytest-mock: Adjust package inputs.Efraim Flashner
* gnu/packages/check.scm (python-pytest-mock)[propagated-inputs]: Move python-pytest-asyncio ... [native-inputs]: ... to here. (python2-pytest-mock): Adjust to ensure package remains unchanged.
2021-10-27gnu: python-pytest-toolbox: Honor #:tests? flag.Efraim Flashner
* gnu/packages/python-check.scm (python-pytest-toolbox)[arguments]: Adjust custom 'check phase to honor the #:tests? flag.
2021-10-27gnu: python-pytest-toolbox: Fix test suite.Efraim Flashner
* gnu/packages/python-check.scm (python-pytest-toolbox)[arguments]: Adjust custom 'check phase to remove obsolete pytest flag. [native-inputs]: Remove python-coverage, python-docutils, python-flake8, python-isort, python-pyflakes, python-pygments, python-pytest-cov, python-pytest-mock, python-pytest-sugar.
2021-10-26gnu: python-joblib: Run test suite sequentially.Efraim Flashner
* gnu/packages/python-xyz.scm (python-joblib)[arguments]: Adjust custom 'check phase to run the test suite sequentially.
2021-10-26gnu: python-joblib: Honor #:tests? flag.Efraim Flashner
* gnu/packages/python-xyz.scm (python-joblib)[arguments]: Adjust custom 'check phase to honor the #:tests? flag.
2021-10-26gnu: mariadb: Only enable parallel tests on x86_64-linux.Efraim Flashner
* gnu/packages/databases.scm (mariadb)[arguments]: Only enable parallel tests when building on x86_64-linux.
2021-10-25gnu: zimg: Update to 3.0.3.Guillaume Le Vaillant
* gnu/packages/image.scm (zimg): Update to 3.0.3.
2021-10-25gnu: mariadb: Don’t run tests in parallel on ppc64le targets.Thiago Jung Bauermann
* gnu/packages/databases.scm (mariadb)[arguments]: Set ‘#:parallel-tests?’ for powerpc64le machines. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-10-25gnu: python-pandas: Update to 1.3.4.Efraim Flashner
* gnu/packages/python-science.scm (python-pandas): Update to 1.3.4.
2021-10-25gnu: python-pandas: Fix building with pytest-6.Efraim Flashner
* gnu/packages/python-science.scm (python-pandas)[arguments]: In custom 'check phase adjust to not fail tests with missing test data.
2021-10-25gnu: python-pandas: Honor #:tests? flag.Efraim Flashner
* gnu/packages/python-science.scm (python-pandas)[arguments]: Adjust custom 'check phase to honor the #:tests? flag.
2021-10-25gnu: python-cython: Honor #:tests? flag.Efraim Flashner
* gnu/packages/python-xyz.scm (python-cython)[arguments]: Adjust custom 'check phase to honor the #:tests? flag.
2021-10-25gnu: python-cython: Update to 0.29.24.Efraim Flashner
* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.24. [arguments]: Adjust custom 'check phase to skip one test. Remove trailing #t from phases.
2021-10-25gnu: gnuradio: Disable a randomly failing test.Guillaume Le Vaillant
* gnu/packages/radio.scm (gnuradio)[arguments]: Add qa_rotator_cc to the list of disabled tests.
2021-10-25gnu: python-pyqtgraph: Disable one failing test.Guillaume Le Vaillant
* gnu/packages/python-xyz.scm (python-pyqtgraph)[arguments]: Add test_reload to list of disabled tests.
2021-10-25gnu: hexchat: Fix build.Guillaume Le Vaillant
* gnu/packages/messaging.scm (hexchat)[arguments]: Use GUIX_PYTHONPATH instead of PYTHONPATH in 'wrap-program' phase.
2021-10-24gnu: java-cisd-args4j: Copy instead of unpacking input.Ricardo Wurmus
* gnu/packages/java.scm (java-cisd-args4j)[arguments]: Do not unpack build-resources input; just copy the contents.
2021-10-24gnu: sailfish: Use TBB 2020.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (sailfish)[inputs]: Replace tbb with tbb-2020.
2021-10-24gnu: sailfish: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Remove trailing #T in build phases... [inputs]: ...and in the origin snippet of "rapmap".
2021-10-24gnu: sailfish: Do not attempt to unpack a directory.Ricardo Wurmus
patch-and-repack no longer outputs a compressed archive when the input was a directory. * gnu/packages/bioinformatics.scm (sailfish)[arguments]: Adjust build phase 'prepare-rapmap.
2021-10-24gnu: jellyfish: Remove Ruby bindings.Ricardo Wurmus
These bindings no longer build and we have no package that would need them. * gnu/packages/bioinformatics.scm (jellyfish)[outputs]: Remove "ruby" output. [arguments]: Remove option for building Ruby bindings. [native-inputs]: Remove ruby.
2021-10-24gnu: cutadapt: Regenerate Cython files.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cutadapt)[arguments]: Add phase 'always-cythonize.
2021-10-24gnu: python-requests-unixsocket: Fix tests.Ricardo Wurmus
* gnu/packages/python-web.scm (python-requests-unixsocket)[arguments]: Do not run tests with --pep8 option; only run tests when enabled.
2021-10-24gnu: python-mpmath: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-mpmath): Update to 1.2.1. [source]: Fetch from git. [arguments]: Run tests directly with pytest; set the version with setuptools. [native-inputs]: Add python-setuptools-scm.
2021-10-24gnu: java-commons-io: Replace %build-inputs with gexp.Ricardo Wurmus
* gnu/packages/java.scm (java-commons-io)[arguments]: Do not use %build-inputs; use gexp with this-package-native-inputs instead.
2021-10-24gnu: python-dnaio: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-dnaio): Update to 0.6.0.
2021-10-24gnu: python-xopen: Update to 0.8.2.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-xopen): Update to 0.8.2.
2021-10-24gnu: macs: Fix build by setting HOME.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (macs)[arguments]: Add build phase to set HOME variable.
2021-10-24gnu: methyldackel: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Remove trailing #T from build phase.
2021-10-24gnu: methyldackel: Pass -fcommon to compiler.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Add -fcommon to CFLAGS.
2021-10-24gnu: flexbar: Use TBB 2020.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (flexbar)[inputs]: Replace tbb with tbb-2020.
2021-10-24gnu: flexbar: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (flexbar)[arguments]: Remove trailing #T from all build phases.
2021-10-24gnu: bwa: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove trailing #T in build phase.
2021-10-24gnu: bwa: Pass -fcommon to compiler.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Add -fcommon option to CFLAGS.
2021-10-24gnu: bowtie1: Use TBB 2020.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie1)[inputs]: Replace tbb with tbb-2020.
2021-10-24gnu: bowtie: Replace invalid characters.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Replace invalid quotes with straight quotes in the 'configure phase.
2021-10-24gnu: bowtie: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Remove trailing #T from build phases... [source]: ...and from the snippet.
2021-10-24gnu: bowtie: Use TBB 2020.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie)[inputs]: Replace tbb with tbb-2020.
2021-10-24gnu: diffoscope: Update to 188.Ricardo Wurmus
* gnu/packages/diffoscope.scm (diffoscope): Update to 188.
2021-10-24gnu: diffoscope: Disable another broken libfile test.Ricardo Wurmus
* gnu/packages/diffoscope.scm (diffoscope)[arguments]: Rename build phase 'remove-berkeley-test to 'remove-broken-file-type-detection-test and delete another test that is broken due to our `file' package.
2021-10-24gnu: python-magic: Update to 0.4.24.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-magic): Update to 0.4.24.
2021-10-24gnu: blender: Use older TBB and update header variables.Ricardo Wurmus
* gnu/packages/graphics.scm (blender)[inputs]: Replace tbb with tbb-2020. [arguments]: Don't set CPATH; set C_INCLUDE_PATH and CPLUS_INCLUDE_PATH instead.
2021-10-24gnu: openvdb: Use older version of TBB.Ricardo Wurmus
* gnu/packages/graphics.scm (openvdb)[inputs]: Replace tbb with tbb-2020.
2021-10-24gnu: tbb-for-salmon: Rename.Ricardo Wurmus
* gnu/packages/tbb.scm (tbb-for-salmon): Rename this variable... (tbb-2020): ...to this. * gnu/packages/bioinformatics.scm (salmon)[inputs]: Rename it.
2021-10-23gnu: hdf-java: Look for jars in the right place.Ludovic Courtès
* gnu/packages/maths.scm (hdf-java)[arguments]: Look for slf4j .jar files in the right place rather than share/java.
2021-10-23gnu: Use 'search-input-file' some more.Ludovic Courtès
This patch replaces occurrences of: (string-append (assoc-ref %build-inputs "…") "/…") by: (search-input-file %build-inputs "/…") * doc/guix.texi (Miscellaneous Services): Use 'search-input-file' in R Shiny example. * gnu/packages/admin.scm (screenfetch): Use 'search-input-file'. (ufetch): Likewise. (hosts): Likewise. * gnu/packages/backup.scm (dirvish): Likewise. * gnu/packages/code.scm (colormake): Likewise. * gnu/packages/compression.scm (makeself-safeextract): Likewise. * gnu/packages/debug.scm (scanmem): Likewise. * gnu/packages/education.scm (snap): Likewise. (omnitux): Likewise. * gnu/packages/emacs-xyz.scm (epipe): Likewise. * gnu/packages/games.scm (openttd-opensfx): Likewise. (openttd-openmsx): Likewise. (openrct2-title-sequences): Likewise. (openrct2-objects): Likewise. (mrrescue): Likewise. (0ad-data): Likewise. (xonotic-data): Likewise. (drascula): Likewise. (make-lure-package): Likewise. (make-queen-package): Likewise. (sky): Likewise. * gnu/packages/gnome.scm (network-manager): Likewise. * gnu/packages/gnuzilla.scm (icedove): Likewise. * gnu/packages/guile-xyz.scm (guile-shapefile): Likewise. * gnu/packages/hurd.scm (netdde): Likewise. * gnu/packages/javascript.scm (js-context-menu): Likewise. (js-commander): Likewise. (js-xmldom-sre): Likewise. * gnu/packages/kde-frameworks.scm (krunner): Likewise. * gnu/packages/kodi.scm (kodi-cli): Likewise. * gnu/packages/libreoffice.scm (hunspell-dict-pl): Likewise. * gnu/packages/linux.scm (e2fsck/static): Likewise. * gnu/packages/markup.scm (markdown): Likewise. * gnu/packages/maths.scm (hdf-java): Likewise. * gnu/packages/multiprecision.scm (libtomcrypt): Likewise. * gnu/packages/networking.scm (batctl): Likewise. * gnu/packages/python-xyz.scm (python-pymediainfo): Likewise. * gnu/packages/shells.scm (fish-foreign-env): Likewise. * gnu/packages/tex.scm (texlive-fonts-iwona): Likewise. * gnu/packages/upnp.scm (miniupnpc): Likewise. * gnu/packages/version-control.scm (git-annex-remote-rclone): Likewise. * gnu/packages/virtualization.scm (qemu): Likewise. * gnu/packages/web.scm (icedtea-web): Likewise. * gnu/packages/wm.scm (stumpish): Likewise.
2021-10-22gnu: qpdfview: Fix build.Josselin Poiret
* gnu/packages/pdf.scm (qpdfview)[arguments]: Fix 'configure' phase. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
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