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* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-savr): Update to 1.37.0.
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* gnu/packages/bioconductor.scm (r-destiny): Update to 3.14.0.
[native-inputs]: Remove r-nbconvertr.
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* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-metapod): Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.8.0.
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* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.0.
[propagated-inputs]: Add r-cli.
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* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.7.1.
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* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-inspect): Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-plgem): Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-rots): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.0.
[propagated-inputs]: Add r-vctrs.
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* gnu/packages/bioconductor.scm (r-goseq): Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-ctc): Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.62.0.
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* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-marray): Update to 1.78.0.
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* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.34.0.
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* gnu/packages/bioconductor.scm (r-pepsnmr): Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-graph): Update to 1.78.0.
[native-inputs]: Add r-knitr.
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* gnu/packages/bioconductor.scm (r-multtest): Update to 2.56.0.
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* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.10.0.
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* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.22.0.
[native-inputs]: Add r-rmarkdown.
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* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.32.0.
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* gnu/packages/bioconductor.scm (r-quantsmooth): Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.78.0.
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* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-xvector): Update to 0.40.0.
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* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-xina): Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-vsn): Update to 3.68.0.
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