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2017-06-09gnu: Add imp.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (imp): New variable.
2017-06-09gnu: Add phylip.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (phylip): New variable.
2017-06-09gnu: Add gess.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (gess): New variable.
2017-06-09gnu: Add trim-galore.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (trim-galore): New variable.
2017-06-09gnu: Add ritornello.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ritornello): New variable.
2017-06-09gnu: Add r-fdrtool.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fdrtool): New variable.
2017-06-09gnu: Add r-lubridate.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lubridate): New variable.
2017-06-08gnu: crawl: Update to 0.20.0.Kei Kebreau
* gnu/packages/games.scm (crawl, crawl-tiles): Update to 0.20.0.
2017-06-09gnu: raptor2: Fix heap overflow bug.Marius Bakke
* gnu/packages/patches/raptor2-heap-overflow.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/rdf.scm (raptor2): Use it.
2017-06-08gnu: artanis: Update to 0.2.1.Ludovic Courtès
* gnu/packages/guile.scm (artanis): Update to 0.2.1. [inputs]: Switch to GUILE-2.2. [arguments]: Adjust #:make-flags for Guile 2.2. Take .go files from lib/guile/2.2. Add 'wrap-art' phase. * gnu/packages/patches/artanis-fix-Makefile.in.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
2017-06-08gnu: gnuastro: Update to 0.3.Ludovic Courtès
* gnu/packages/astronomy.scm (gnuastro): Update to 0.3. Adjust as suggested by 'guix lint'.
2017-06-08gnu: php: Update to 7.1.6.Julien Lepiller
* gnu/packages/php.scm (php): Update to 7.1.6.
2017-06-08gnu: minetest: Update to 0.4.16.Kei Kebreau
* gnu/packages/games.scm (minetest-data, minetest): Update to 0.4.16.
2017-06-08gnu: certbot, python-acme: Update to 0.15.0.Leo Famulari
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.15.0. (python-acme, python2-acme)[arguments]: Remove 'patch-dependency' phase. This issue was fixed upstream: https://github.com/certbot/certbot/commit/d0e471dc8093bd0d08c5a739e5cf9677240d9c0e
2017-06-08gnu: kde.scm, kde-frameworks.scm: Add and update comments.Hartmut Goebel
* gnu/packages/kde-frameworks.scm (kpackage,plasma-framework)[arguments]: Update comment (number of failed tests). (kdeclarative)[arguments]<#:phases>: Update comment. (bluez-qt,knotifications,kpty,ktexteditor,ktextwidgets,solid)[inputs]: Add a todo comment. (kguiaddons): Add a todo comment. (phonon)[native-inputs]: Add a todo comment. * gnu/packages/kde-frameworks.scm (kauth)[arguments]<#:phases>: Add a todo comment.
2017-06-08gnu: kwindowsystem: Fix some test-cases (test-suite still disabled).Hartmut Goebel
Make five tests pass, three are still failing – thus the test-suite is still disabled. This commit's aim is to retain the progress. * gnu/packages/kde-frameworks.scm (kwindowsystem)[native-inputs]: Add dbus. [arguments]<#:test?>: Change comment. <#:phases>: Replace phase `check` by new one befind 'install'.
2017-06-08gnu: kwidgetsaddons: Re-enable tests.Hartmut Goebel
* gnu/packages/kde-frameworks.scm (kwidgetsaddons)[arguments]: Test-suite is now passing; reenable it.
2017-06-08gnu: kiconthemes: Re-enable tests.Hartmut Goebel
* gnu/packages/kde-frameworks.scm (kiconthemes)[arguments]: Test-suite is now passing; reenable it.
2017-06-08gnu: kwallet: Use gpgme instead of gpgmepp.Hartmut Goebel
The C++-bindings are part of gpgme since version 1.7. * gnu/packages/kde-frameworks.scm(kwallet)[inputs]: Replace gpgmepp by gpgme.
2017-06-08gnu: gpgmepp: Superseded by gpgme.Hartmut Goebel
The C++-bindings are part of gpgme since version 1.7. * gnu/packages/kde-frameworks.scm (gpgmepp)[properties]: New field.
2017-06-08gnu: sonnet: Add optional input (spell-checker).Hartmut Goebel
* gnu/packages/kde-frameworks.scm (sonnet)[inputs]: Add hunspell; add todo comment for other language's spell-checker.
2017-06-08gnu: kpackage: Add more optional inputs.Hartmut Goebel
* gnu/packages/kde-frameworks.scm (kpackage)[inputs]: Add kdoctools.
2017-06-08gnu: plasma-framework: Add more optional inputs.Hartmut Goebel
* gnu/packages/kde-frameworks.scm (plasma-frameworks)[native-inputs]: Add pkg-config. [inputs]: Add kwayland.
2017-06-08gnu: ktexteditor: Add more optional inputs.Hartmut Goebel
* gnu/packages/kde-frameworks.scm (ktexteditor)[native-inputs]: Add pkg-config.
2017-06-08gnu: kinit: Add more optional inputs.Hartmut Goebel
* gnu/packages/kde-frameworks.scm (kinit) [native-inputs]: Add pkg-config. [inputs]: Add kdoctools, libcap.
2017-06-08gnu: kio: Add more optional and recommended inputs.Hartmut Goebel
* gnu/packages/kde-frameworks.scm (kio)[inputs]: Add mit-krb5, qtscript.
2017-06-08gnu: kimageformats: Add more optional and recommended inputs.Hartmut Goebel
* gnu/packages/kde-frameworks.scm (kimageformats) [native-inputs]: Add pkg-config. [inputs]: Add karchive, openexr. [arguments]<#:configure-flags>: Set include-flags.
2017-06-08gnu: kde frameworks: Avoid requiring xorg-server for tests.Hartmut Goebel
Some packages started a x.org server for testing, which can be avoided by setting QT_QPA_PLATFORM=offscreen. * gnu/packages/kde-frameworks.scm (kitemmodels) [native-inputs]: Remove xorg-server. [arguments]<#phases> 'start-xorg-server' replace by 'check-setup'. (kplotting, kcrash, kimageformats): Likewise. (kitemviews)[native-inputs]: Remove xorg-server. [arguments]<#phases> 'start-xorg-server': Remove phase; 'check-setup': set QT_QPA_PLATFORM=offscreen.
2017-06-08gnu: kcompletion: Remove unused native input.Hartmut Goebel
The xorg server is not required since change 548f99b3e0d3647f29ddc3c3864ca36b655f14ec. * gnu/packages/kde-frameworks.scm (kcompletion)[native-inputs]: Remove xorg-server.
2017-06-08gnu: kitemmodels: Add more optional inputs.Hartmut Goebel
* gnu/packages/kde-frameworks.scm (kitemmodels)[inputs]: Add qtdeclarative.
2017-06-08gnu: kguiaddons: Remove unused native input.Hartmut Goebel
The xorg server is not required since change 1de5b667f896aa2c612416bffac5f77cae94c5f4. * gnu/packages/kde-frameworks.scm (kguiaddons)[native-inputs]: Remove xorg-server.
2017-06-08gnu: kguiaddons: Add more optional inputs.Hartmut Goebel
* gnu/packages/kde-frameworks.scm (kguiaddons) [native-inputs]: Add pkg-config. [inputs]:Add qtx11extras.
2017-06-08gnu: gnome-shell: Fix startup failure.Marius Bakke
Fixes <https://bugs.gnu.org/27264>. * gnu/packages/gnome.scm (gnome-shell)[inputs]: Add LIBRSVG and GEOCLUE.
2017-06-08gnu: geoclue: Create typelib files.Marius Bakke
* gnu/packages/gnome.scm (geoclue)[native-inputs]: Add GOBJECT-INTROSPECTION.
2017-06-08bootloader: Use menu-entry to define custom bootloader entries.Mathieu Othacehe
* gnu/bootloader.scm (<menu-entry>): New variable. Export associated getters, This record is extracted from grub module. * gnu/bootloader/extlinux.scm (extlinux-configuration-file): Use menu-entry->boot-parameters to convert menu-entry records to boot-parameters. * gnu/bootloader/grub.scm (<menu-entry>): Remove. (boot-parameters->menu-entry): Remove. (grub-configuration-file): Use boot-parameters to create configuration entries. * gnu/system.scm (menu-entry->boot-parameters): New exported procedure.
2017-06-08gnu: emacs: Fix ert-runner by adding 'reporters' subdirectory.Maxim Cournoyer
Previous this change, ert-runner would fail with error: "Invalid reporter: dot". * gnu/packages/emacs.scm (ert-runner)[include]: Add regexp to match elisp files under the 'reporters' subdirectory. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-06-08gnu: Add nftables.Rutger Helling
* gnu/packages/linux.scm (nftables): New variable Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-06-08gnu: the-silver-searcher: Update to 2.0.0.Clément Lassieur
* gnu/packages/code.scm (the-silver-searcher): Update to 2.0.0.
2017-06-08gnu: diamond: Update to 0.9.6.Ben Woodcroft
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.6.
2017-06-07gnu: guile-2.2: Increase max-silent-time to 6 hours.Mark H Weaver
* gnu/packages/guile.scm (guile-2.2)[properties]: Increase max-silent-time to 6 hours.
2017-06-07mapped-devices: Cope with delayed appearance of LUKS source.Mark H Weaver
Fixes <https://bugs.gnu.org/27242>. * gnu/system/mapped-devices.scm (open-luks-device): If 'find-partition-by-luks-uuid' fails, try again once per second, up to ten times.
2017-06-08gnu: livemedia-utils: Change source URL to one that is archived.Clément Lassieur
* gnu/packages/video.scm (livemedia-utils)[source]: Change it.
2017-06-07gnu: Rename 's' to 's-shell'.Mark H Weaver
* gnu/packages/shells.scm (s): Rename to ... (s-shell): ... this. [name]: Change to "s-shell".
2017-06-07artwork: Use a descriptive name for the source directory.Leo Famulari
* gnu/artwork.scm (%artwork-repository): Set a descriptive file-name and use the full commit hash when fetching.
2017-06-07gnu: Add packagekit.Christopher Baines
* gnu/packages/freedesktop.scm (packagekit): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-06-07gnu: emacs-org: Update to 20170606.Nicolas Goaziou
* gnu/packages/emacs.scm (emacs-org): Update to 20170606. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-06-07gnu: livemedia-utils: Update to 2017.06.04.Clément Lassieur
* gnu/packages/video.scm (livemedia-utils): Update to 2017.06.04.
2017-06-07file-systems: Use creation time if modification time is unset for ISO9660.Danny Milosavljevic
* gnu/build/file-systems.scm (iso9660-superblock-uuid): Modify.
2017-06-06gnu: perl: Fix CVE-2017-6512 in File::Path.Leo Famulari
* gnu/packages/perl.scm (perl)[replacement]: New field. (perl/fixed): New variable. * gnu/packages/patches/perl-file-path-CVE-2017-6512.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2017-06-06gnu: perl-file-path: Update to 2.13.Leo Famulari
This fixes CVE-2017-6512. * gnu/packages/perl.scm (perl-file-path): Update to 2.13.
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