Age | Commit message (Collapse) | Author |
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* gnu/packages/haskell.scm (ghc-erf): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/haskell.scm (ghc-vector-th-unbox): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/haskell.scm (ghc-errors): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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This is a followup to a54cb3ce1f114ee1bc26371d9bc4abb0e04001ef.
* gnu/packages/python.scm (python-chardet)[source](uri): Use PYPI-URI.
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* gnu/packages/patches/glibc-CVE-2017-15670-15671.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc/fixed): New variable.
(glibc-2.24, glibc-2.23, glibc-2.22)[source](patches): Add
'glibc-CVE-2017-15670-15671.patch'.
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* gnu/packages/audio.scm (faust-2): Update to 2.1.0.
[source]: Fetch sources via git.
[arguments]: Add phase "fix-permissions".
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Fixes CVE-2017-15228, CVE-2017-15227, CVE-2017-15721, CVE-2017-15723 and
CVE-2017-15722. See <https://irssi.org/security/irssi_sa_2017_10.txt>.
* gnu/packages/irc.scm (irssi): Update to 1.0.5.
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* gnu/packages/python.scm (python-chardet, python2-chardet): Update to 3.0.4.
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* gnu/packages/python.scm (python2-hypothesis)[propagated-inputs]: Add
python2-enum34, which was incorrectly listed among the native inputs.
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* gnu/packages/password-utils.scm (keepassxc): Update to 2.2.1.
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Fixes a regression introduced in 8075b623786f11966febac7d4ac0f5e90e3f7712.
This allows 'linguist.pro' of 'qttools' to find 'ConfigVersion.cmake.in',
which is needed for 'Qt5LinguistToolsConfigVersion.cmake'.
Reported by Thomas Danckaert <post@thomasdanckaert.be>.
* gnu/packages/qt.scm (qtsvg)[arguments]: Set 'EffectiveSourcePaths' in
the 'configure-qmake' phase.
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* gnu/packages/vim.scm (vim): Update to 8.0.1207.
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* gnu/packages/admin.scm (rottlog)[arguments]: Add 'patch-paths' phase.
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* gnu/packages/display-managers.scm (sddm)[arguments]: Add 'fix-qml-include'
phase.
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* gnu/packages/textutils.scm (python-editdistance): New variable.
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* gnu/packages/kde-frameweorks.scm(kservice): Fix comment.
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* gnu/packages/audio.scm (suil): Update to 0.10.0.
[inputs]: Add gtk+.
[description]: Remove version numbers from supported toolkits.
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* gnu/packages/music.scm (ingen): Update to 0.0.0-2.cc4a4db33.
[inputs]: Replace lv2 with lv2-devel.
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* gnu/packages/audio.scm (lv2-devel): New variable.
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* gnu/packages/gtk.scm (ganv-devel): Update to 1.5.4-12f7d6b04.
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* gnu/packages/audio.scm (raul-devel): Update to 0.8.9-4db870b2b.
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* gnu/packages/graph.scm (r-rgraphviz): New variable.
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* gnu/packages/cran.scm (r-pdist): New variable.
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* gnu/packages/ocaml.scm (coq-interval): Update to 3.3.0.
[inputs]: Add coq-bignums.
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* gnu/packages/ocaml.scm (coq-bignums): New variable.
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* gnu/packages/ocaml.scm (coq-coquelicot): Update to 3.0.1.
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* gnu/packages/ocaml.scm (coq-mathcomp): Update to 1..6.2.
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* gnu/packages/ocaml.scm (coq-flocq): Update to 2.6.0.
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* gnu/packages/ocaml.scm (coq): Update to 8.7.0.
[build-system]: Use ocaml-build-system.
[inputs]: Add python-2.
[arguments]: Disable two failing tests.
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* gnu/packages/ocaml.scm (camlp5) [phases]: New install-meta phase.
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* gnu/packages/mp3.scm (lame): Update to 3.100.
[source]: Don't hard-code version.
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* gnu/packages/qt.scm (python-pyqt): Update to 5.9.
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* gnu/packages/qt.scm (python-sip): Update to 4.19.3.
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* gnu/packages/gnome.scm (rest): Update to 0.8.1.
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* gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.26.1.
[build-system]: Use meson-build-system.
[native-inputs]: Add gtk+:bin.
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* gnu/packages/networking.scm (perl-geo-ip): Update to 1.51.
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* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
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* gnu/packages/music.scm (schismtracker): Update to 20170910.
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Fixes <https://bugs.gnu.org/28745>.
* gnu/packages/audio.scm (csound): Fix hash.
* gnu/packages/engineering.scm (fritzing): Likewise.
* gnu/packages/erlang.scm (erlang): Likewise.
* gnu/packages/fonts.scm (font-google-material-design-icons): Likewise.
* gnu/packages/graphics.scm (ogre): Likewise.
* gnu/packages/java.scm (java-plexus-interpolation, antlr3): Likewise.
* gnu/packages/serialization.scm (yaml-cpp): Likewise.
* gnu/packages/version-control.scm (libgit2): Likewise.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/patches/libvirt-CVE-2017-1000256.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (libvirt)[source]: Use it.
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* gnu/packages/databases.scm (mysql): Update to 5.7.20.
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* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.1.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.10.20.
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* gnu/packages/mail.scm (dovecot): Update to 2.2.33.2.
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This follows up commit dd12d4aad02fc83e00e7b09d676aa78bcb7dd476.
* gnu/packages/protobuf.scm (protobuf-2): New variable.
* gnu/packages/lighting.scm (ola)[propagated-inputs]: Use it.
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* gnu/packages/fonts.scm (font-hack): Update to 3.000.
[source]: Download from new account.
[license]: Explicitly list all licences.
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* gnu/packages/video.scm (aegisub): New variable.
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* gnu/packages/video.scm (aegisub): New variable.
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* gnu/packages/xiph.scm (speexdsp)[arguments]: On aarch64-linux, disable
neon optimisations.
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* gnu/packages/emacs.scm (emacs-json-snatcher): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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