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2024-05-01gnu: bats: Update to 1.11.0.Oleg Pykhalov
* gnu/packages/bash.scm (bats)[version]: Update to 1.11.0. [arguments]<#:builder>: Filter out symlinks in patch-shebang. Change-Id: I74405b99f91172c10b8c81caa0f3f46e1df4d74e
2024-05-01gnu: jc: Update to 1.25.2.Oleg Pykhalov
* gnu/packages/admin.scm (jc): Update to 1.25.2. Change-Id: I076bf285a6fd23ef65f6c094b355c5891c8b76e7
2024-05-01gnu: gource: Update to 0.54.Oleg Pykhalov
* gnu/packages/version-control.scm (gource)[version]: Update to 0.54. [arguments]<#:disallowed-references>: Add tzdata-for-tests. <#:phases>: Unbundle tinyxml. Set TZDIR environment variable. <#:configure-flags>: Add --with-tinyxml argument. [native-inputs]: Add tzdata-for-tests. [inputs]: Replace pcre with pcre2. Add tinyxml. Change-Id: I67c2a1ee74582ed3e0a4ec5e6d229c948f9d5265
2024-05-01gnu: bird: Update to 2.15.1.Oleg Pykhalov
* gnu/packages/networking.scm (bird): Update to 2.15.1. Change-Id: Ib30ee5eb503cbbafb066c13221d36059669f3dec
2024-04-30gnu: nickle: Update to 2.97.Eric Bavier
* gnu/packages/patches/nickle-man-release-date.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/patches/nickle-man-release-date.patch (nickle): Update to 2.97. [source]: Use patch. [native-inputs]: Remove field. [inputs]: Add readline. Change-Id: Id33d121e9eea9e3124b8891c60047b3943711ade
2024-04-30gnu: Remove linux-libre 6.7.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-6.7-version, linux-libre-6.7-gnu-revision, deblob-scripts-6.7, linux-libre-6.7-pristine-source, linux-libre-6.7-source, linux-libre-headers-6.7, linux-libre-6.7): Remove variables. * gnu/packages/aux-files/linux-libre/6.7-arm.conf, gnu/packages/aux-files/linux-libre/6.7-arm64.conf, gnu/packages/aux-files/linux-libre/6.7-i686.conf, gnu/packages/aux-files/linux-libre/6.7-x86_64.conf: Delete files. * Makefile.am (AUX_FILES): Remove aforementioned .conf files. Change-Id: Ic69a65e1fbfa59d893e85d26950f33195ea9fbe1 Signed-off-by: Leo Famulari <leo@famulari.name>
2024-04-30gnu: Add psfex.Sharlatan Hellseher
* gnu/packages/astronomy.scm (psfex): New variable. Change-Id: I073df933b244811cd09343ea4951f481ad76b075
2024-04-30gnu: Add scamp.Sharlatan Hellseher
* gnu/packages/astronomy.scm (scamp): New variable. Change-Id: If32adb281017858b0e7d5816cecb509af3cec835
2024-04-30gnu: python-stsci-stimage: Adjust test steps.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stsci-stimage): [arguments]: <#:test-flags>: Add them. <#:phases>: Fail over to default 'check phase and add 'waf-configure-build phase before check. [native-inputs]: Remove python-codecov and, python-pytest-cov. [description]: Fix indentation. Change-Id: I350c4ced2cb4afaff72d4d4941d198932cd888f5
2024-04-30gnu: python-stsci-stimage: Update to 0.2.8.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stsci-stimage): Update to 0.2.8. Change-Id: Ib2f8b9544bc732959d87527d2c55f274dab4393b
2024-04-30gnu: python-crds: Update to 11.17.20.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.20. Change-Id: I426241c2e216b0261787117a10ceab36197dff12
2024-04-30gnu: python-asdf: Adjust inputs.Sharlatan Hellseher
python-asdf requires python-semantic-version during runtime which may be reproduced by: guix shell python-asdf python -- python3 -c 'import asdf' <...> ModuleNotFoundError: No module named 'semantic_version' * gnu/packages/astronomy.scm (python-asdf): Adjust inputs. [native-inputs]: Remove python-semantic-version. [propagated-inputs]: Add python-semantic-version. (python-asdf-astropy, python-asdf-compression, python-asdf-coordinates-schemas, python-asdf-wcs-schemas, python-asdf-zarr, python-astroalignn, python-ccdproc, python-crds, python-ginga, python-gwcs, python-photutils, python-rad, python-reproject, python-roman-datamodels, python-spectral-cube, python-specutils, python-stcal, python-stdatamodels, python-stpipe, python-stsynphot, python-sunpy, python-synphot, python-tweakwcs): Remove python-semantic-version from native or propagated inputs. Change-Id: I96bf57f77c327f4ff208e0b173e84bcdd4c287da Reported-by: Iliya Tikhonenko <tikhonenko@mpe.mpg.de>
2024-04-30gnu: python-reproject: Enable tests.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-reproject): Enable tests. [arguments]: <#:tests-flags>: Add them as seen in tox.ini. <#:phases>: Rename 'writable-home to 'prepare-test-environment to reflect purpose and build extension before tests. [native-inputs]: Add python-xdist. Change-Id: I7a5454e3ce241b7a54626f8aba27602b4965c25b
2024-04-30gnu: python-reproject: Update to 0.13.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-reproject): Update to 0.13.1. [arguments]: <#:phases>: Add 'create-setup.py phase. [native-inputs]: Remove python-cython; add python-cython-3. Change-Id: I77845fa1a9748901bc08235ba95060d39b64e467
2024-04-30gnu: python-photutils: Update to 1.12.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-photutils): Update to 1.12. [arguments]: <#:phases>: Add 'create-setup.py phase. Change-Id: I94908eda0eb7741cb23d2d4dc969c91cdbd08fa2
2024-04-30gnu: python-specutils: Update to 1.14.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-specutils): Update to 1.14.0. Change-Id: Ied7078bc28d7b995574fb228797f1d046ea52feb
2024-04-30gnu: python-casa-formats-io: Update to 0.3.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-casa-formats-io): Update to 0.3.0. Change-Id: I3f8ca4c981ac31cc955d374b4e4735e53af4c868
2024-04-30gnu: python-roman-datamodels: Update to 0.19.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-roman-datamodels): Update to 0.19.1. [propagated-inputs]: Remove python-asdf-standard. Change-Id: I30e2adef137bb95f37dd7651ebf8c5e6f9e6155f
2024-04-30gnu: python-regions: Update to 0.9.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-regions): Update to 0.9. [arguments] <#:phases>: Add 'create-setup.py phase, rename 'prepare-test-environment to 'build-extensions to reflect purpose. [native-inputs]: Remove python-cython; add python-cython-3. Change-Id: Ia634f93336eb7658c4eaeeb7ddb6539c2e0adee3
2024-04-30gnu: python-rad: Update to 0.19.2.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-rad): Update to 0.19.2. Change-Id: I4de8e8228f6d7ae1ae28cac726fcce5f2058f928
2024-04-30gnu: python-astroplan: Update to 0.10.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astroplan): Update to 0.10. Change-Id: I80a988262e417f8a5501d02db5e16a93b5d037b4
2024-04-30gnu: python-sunpy: Update to 5.1.2.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-sunpy): Update to 5.1.2. Change-Id: I275445d688dfb3c3c3da18a37d7d21d79814f8ef
2024-04-30gnu: python-skyfield: Enable tests.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-skyfield): Enable tests. [source]: Swap to git checkout containing test data. [build-system]: Swap to pyproject-build-system. [native-inputs]: Add python-assay and python-pandas. Change-Id: Ia4604ab2e44860dcf1294688639d3c54881f8d8c
2024-04-30gnu: Add python-assay.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-assay): New variable. Change-Id: I0ec910d8c37000ff08119a33e3f42af2269fa494
2024-04-30gnu: python-bayesicfitting: Update to 3.2.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-bayesicfitting): Update to 3.2.1. Change-Id: I97bfc44920a3e8f7c2040088f284a38e0a66aa88
2024-04-30gnu: python-bayesicfitting: Refresh package style.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-bayesicfitting): Adjust indentation. [build-system]: Swap to pyproject-build-system. [arguments] <#:test-flags>: Add them. <#:phases>: Use test flags in 'check phase. Change-Id: Iffc8591199bbaf2a0da95b6b22476e34121dbe79
2024-04-30gnu: python-gatspy: Refresh package style.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-gatspy): Adjust indentetion. [arguments]: Use #~ qutation style. <#:test-flags>: Activate tests for supersmoother. [propagated-inputs]: Add python-supersmoother. Change-Id: Ibbaae0f87693f5f4aa6e3f92d567881ad58dbfba
2024-04-30gnu: python-ginga: Set HOME for sanity check.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-ginga) [arguments] <#:phases>: Add 'set-home phase. Change-Id: I7fc9b043ae8ac465645215dabc9d8643b8e08fe2
2024-04-30gnu: python-ginga: Update to 5.0.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-ginga): Update to 5.0.1. [arguments] <#:phases>: Add 'relax-requirements phase. [propagated-inputs]: Add opencv, python-exif-read python-packaging, python-pyyaml, and python-tomli. [native-inputs]: Add python-pytest-astropy-header. Change-Id: I314bbd9a037b134a03f5a4a174ab878e9523e4b6
2024-04-30gnu: python-tweakwcs: Update to 0.8.7.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-tweakwcs): Update to 0.8.7. Change-Id: I2ef8f29839a99ec3b40efc34a61f57bc32216c8e
2024-04-30gnu: python-tweakwcs: Adjust indentation.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-tweakwcs): Adjust indentation. Change-Id: Ic8c79addbd0253c2364382e6a0e632945eafb05a
2024-04-30gnu: python-synphot: Update to 1.4.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-synphot): Update to 1.4.0. Change-Id: I070381de76cfe1bf057d1c8032d2145d5c346fa2
2024-04-30gnu: python-synphot: Add custom check phase.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-synphot): [arguments] <#:phases>: Remove 'prepare-test-environment phase; add custom 'check phase. Change-Id: I9cb6d65c226a555ccd62a3a6c08d00868a66f109
2024-04-30gnu: python-stsci-image: Refresh package style.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stsci-image): Adjust indentation. [description]: Fix grammar. Change-Id: I1f4bf751720a3be324644bf417104e36510c62a6
2024-04-30gnu: python-stsci-imagestats: Update to 1.8.2.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stsci-imagestats): Update to 1.8.2. Change-Id: I13bb6eab789a8aa365f6bf0f0f892d8a17e3cc66
2024-04-30gnu: python-stdatamodels: Update to 1.10.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 1.10.1. Change-Id: Ib1626de00fbd060212b125c3a52e116aa126727e
2024-04-30gnu: python-stcal: Update to 1.7.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stcal): Update to 1.7.0. [native-inputs]: Remove python-pytest-openfiles. Change-Id: Ib33bb72ff73fcf569a2519b3353260461b63c143
2024-04-30gnu: python-jwst: Update to 1.14.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-jwst): Update to 1.14.0. [propagated-inputs]: Remove python-asdf-transform-schemas; add python-importlib-metadata, python-packaging, python-pysiaf, and python-synphot. Change-Id: I0310e0680457a7851d07fa14406edf079000fcd5
2024-04-30gnu: python-astropy-healpix: Update to 1.0.3.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy-healpix): Update to 1.0.3. Change-Id: Iffc1d537bd8b3ec10fbb5ddb7c2fd6251813ccde
2024-04-30gnu: python-astropy: Update to 6.0.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy): Update to 6.0.1. [arguments]: <#:test-flags>: Enable recently failing tests; disable some new one. [propagated-inputs]: Add python-matplotlib and python-scipy. [native-inputs]: Remove python-matplotlib and python-scipy; add python-threadpoolctl. Change-Id: Iaa48c84565d11c944444ecd1fd77291f4b3c8c3c
2024-04-30gnu: python-astropy: Symplify package.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy): Simplify package. [build-system]: Swap to pyproject-build-system. [arguments] <#:phases>: Merge 'prepare-test-environment into custom 'check phase and move test arguments to <#:test-arguments>. Change-Id: I80098c3eb4e9d95ef2c651d5416196165be3f7c0
2024-04-30gnu: python-astropy-iers-data: Update to 0.2024.4.15.2.45.49.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to 0.2024.4.15.2.45.49. Change-Id: Iaf902a0f506f149682868d0df0710d400b21f7e6
2024-04-30gnu: python-asdf-astropy: Update to 0.6.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.6.1. Change-Id: I06f00006fcba1d0e385e6bc3f82f7a85403d94a9
2024-04-30gnu: python-asdf: Update to 3.2.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf): Update to 3.2.0. [arguments] <#:phases>: Replace 'fix-tests-setup with 'patch-pyprojectct-toml phase and add one more substitution rule. [propagated-inputs]: Remove python-asdf-unit-schemas. Change-Id: I9e7a0282ed0a9eb82a20988762792e10ae33496b
2024-04-30gnu: Add python-supersmoother.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-supersmoother): New variable. Change-Id: I8fb43d746757014e3b773c07458b777b893adb4a
2024-04-30gnu: Add python-pysiaf.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-pysiaf): New variable. Change-Id: Ide732d666bccad885ed3e8c78d62df7e74524b9a
2024-04-30gnu: python-exif-read: Update to 3.0.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-exif-read): Update to 3.0.0. Change-Id: I19e0a19041aa943a9f3ecf262077328d52ef4d1d
2024-04-30gnu: parfive: Update to 2.1.0.Sharlatan Hellseher
* gnu/packages/python-web.scm (parfive): Update to 2.1.0. Change-Id: I6207150e012c03943d4553854123831d1bba3e55
2024-04-30gnu: python-pytest-socket: Update to 0.7.0.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-socket): Update to 0.7.0. Change-Id: I879064eba2f4d93d2e2b519ebdf613685d5b5df9
2024-04-30gnu: libxisf: Update to 0.2.12.Sharlatan Hellseher
* gnu/packages/astronomy.scm (libxisf): Update to 0.2.12. Change-Id: Ide88155581b317cdb74683f49d2ec8b87c6bc5de