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2023-04-07gnu: Purge pre-1.3.0 deprecated packages.Bruno Victal
* gnu/packages/bioinformatics.scm (deeptools): Remove variable. * gnu/packages/efi.scm (efi_analyzer): Ditto. * gnu/packages/guile.scm (guile-2.2/bug-fix, guile-json): Ditto. * gnu/packages/image.scm (libjpeg): Ditto. * gnu/packages/kde.scm (kdevplatform): Ditto * gnu/packages/linphone.scm (linphoneqt): Ditto. * gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): Ditto. * gnu/packages/mpi.scm (hwloc-2.0): Ditto. * gnu/packages/music.scm (python-abjad, zlfo): Ditto. * gnu/packages/perl.scm (perl-base, perl-parent): Ditto. * gnu/packages/tryton.scm (python-trytond): Ditto. * gnu/packages/video.scm (gnome-mpv): Ditto. * tests/graph.scm: Use guile-json-1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-07gnu: Add bpftool.Ryan Sundberg
* gnu/packages/linux.scm (bpftool): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-04-07gnu: erlang: Update to 25.3.jgart
* gnu/packages/lisp.scm (erlang): Update to 25.3. [native-inputs]: Update erlang-manpages to 0vnpds5. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-07gnu: hwloc: Update to 2.9.1.Philippe SWARTVAGHER
* gnu/packages/mpi.scm (hwloc-2): Update to 2.9.1. Patch to skip tests requiring /sys on non-x86 systems should not be necessary anymore, as https://github.com/open-mpi/hwloc/pull/570 has been merged in this new version. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-07gnu: linux-libre-lts: Update to 6.1.Jonathan Brielmaier
6.1 is the newest long-term support version of the kernel. * gnu/packages/linux.scm (linux-libre-lts-version, linux-libre-lts-gnu-revision, linux-libre-lts-pristine-source, linux-libre-lts-source, linux-libre-lts): Use linux-libre-6.1. Signed-off-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
2023-04-07home: xdg-base-directories: Set correct value for XDG_STATE_HOME.Bruno Victal
XDG Base Directory Specification 0.8 officially introduces the XDG_STATE_HOME environment variable. Fixes <https://issues.guix.gnu.org/issue/61809>. * gnu/home/services/xdg.scm (home-xdg-base-directories-configuration)[state-home]: Set default value according to spec. Update field documentation. (home-xdg-base-directories-service-type): Update service description. Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-04-06gnu: linux-libre 6.1: Update to 6.1.23.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.23. (linux-libre-6.1-pristine-source): Update hash.
2023-04-06gnu: linux-libre: Update to 6.2.10.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.10. (linux-libre-6.2-pristine-source): Update hash.
2023-04-06gnu: rizin: Update to 0.5.2.Theofilos Pechlivanis
* gnu/packages/engineering.scm (rizin): Update to 0.5.2. [arguments]: Remove libuv. Add lzma, libmspack and swift_demangler. Skip the analysis_var test. [inputs]: Add libmspack. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: janet: Update to 1.27.0.Yovan Naumovski
* gnu/packages/lisp.scm (janet): Update to 1.27.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: libexif: Update to 0.6.24. [fixes CVE-2020-0198, CVE-2020-0452]Bruno Victal
* gnu/packages/photo.scm (libexif): Update to 0.6.24. [source]: Switch to git checkout. [native-inputs]: Add autoconf, automake, gettext-minimal and libtool. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: tcsh: Fix riscv64 cross-compilation.Z572
* gnu/packages/shells.scm (tcsh): fix riscv64 cross-build. [arguments]<#:phase>: Add 'update-config-scripts' phase for riscv64. [native-inputs]: Add CONFIG for riscv64. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: Add avfs.Sergey Trofimov
* gnu/packages/file-systems.scm (avfs): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: pounce: Update to 3.1.Arjan Adriaanse
* gnu/packages/messaging.scm (pounce): Update to 3.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-06gnu: r-ranger: Update to 0.15.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ranger): Update to 0.15.1.
2023-04-06gnu: r-sn: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sn): Update to 2.1.1. [native-inputs]: Add r-r-rsp.
2023-04-06gnu: r-rsqlite: Update to 2.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.1.
2023-04-06gnu: r-rcpparmadillo: Update to 0.12.2.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.2.0.0.
2023-04-06gnu: r-ggplot2: Update to 3.4.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.4.2.
2023-04-06gnu: r-matrix: Update to 1.5-4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.5-4.
2023-04-06gnu: r-lattice: Update to 0.21-8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lattice): Update to 0.21-8.
2023-04-06gnu: r-gstat: Update to 2.1-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-gstat): Update to 2.1-1.
2023-04-06gnu: r-spacetime: Update to 1.3-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-spacetime): Update to 1.3-0.
2023-04-06gnu: r-ggh4x: Update to 0.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.4.
2023-04-06gnu: r-readtext: Update to 0.82.Ricardo Wurmus
* gnu/packages/cran.scm (r-readtext): Update to 0.82. [propagated-inputs]: Remove r-tibble; add r-pillar.
2023-04-06gnu: r-densestbayes: Update to 1.0-2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-densestbayes): Update to 1.0-2.2.
2023-04-06gnu: r-tune: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tune): Update to 1.1.0.
2023-04-06gnu: r-dials: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dials): Update to 1.2.0.
2023-04-06gnu: r-projpred: Update to 2.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-projpred): Update to 2.5.0. [propagated-inputs]: Remove r-dplyr, r-magrittr, and r-rlang.
2023-04-06gnu: r-loo: Update to 2.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-loo): Update to 2.6.0.
2023-04-06gnu: r-openmx: Update to 2.21.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-openmx): Update to 2.21.8.
2023-04-06gnu: r-topicmodels: Update to 0.2-14.Ricardo Wurmus
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-14.
2023-04-06gnu: r-emplik: Update to 1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-emplik): Update to 1.3.
2023-04-06gnu: r-rglpk: Update to 0.6-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-rglpk): Update to 0.6-5.
2023-04-06gnu: r-parameters: Update to 0.20.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.20.3.
2023-04-06gnu: r-xgboost: Update to 1.7.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-xgboost): Update to 1.7.5.1.
2023-04-06gnu: r-seqinr: Update to 4.2-30.Ricardo Wurmus
* gnu/packages/cran.scm (r-seqinr): Update to 4.2-30.
2023-04-06gnu: r-sjplot: Update to 2.8.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.14. [propagated-inputs]: Remove r-effectsize.
2023-04-06gnu: r-ggeffects: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 1.2.1.
2023-04-06gnu: r-glmmtmb: Update to 1.1.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-glmmtmb): Update to 1.1.7.
2023-04-06gnu: r-interp: Update to 1.1-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-interp): Update to 1.1-4.
2023-04-06gnu: r-flextable: Update to 0.9.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): Update to 0.9.1.
2023-04-06gnu: r-ellipse: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-ellipse): Update to 0.4.5.
2023-04-06gnu: r-quantmod: Update to 0.4.21.Ricardo Wurmus
* gnu/packages/cran.scm (r-quantmod): Update to 0.4.21.
2023-04-06gnu: r-tsp: Update to 1.2-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-tsp): Update to 1.2-4.
2023-04-06gnu: r-prodlim: Update to 2023.03.31.Ricardo Wurmus
* gnu/packages/cran.scm (r-prodlim): Update to 2023.03.31. [propagated-inputs]: Add r-data-table and r-diagram.
2023-04-06gnu: r-ps: Update to 1.7.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-ps): Update to 1.7.4.
2023-04-06gnu: r-ecp: Update to 3.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-ecp): Update to 3.1.4. [native-inputs]: Add r-r-rsp.
2023-04-06gnu: r-ggvenn: Update to 0.1.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggvenn): Update to 0.1.10.
2023-04-06gnu: r-ggpp: Update to 0.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpp): Update to 0.5.2.
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