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2024-02-11gnu: guile-png: Update to 0.7.2....* gnu/packages/guile-xyz.scm (guile-png): Update to 0.7.2. Change-Id: Ic84b1472bdfdf47db26e0954b6135054290e49b0 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Artyom V. Poptsov
2024-02-11gnu: abjad-ext-rmakers: Simplify package....* gnu/packages/music.scm (abjad-ext-rmakers) [build-system]: Swap to pyproject-build-system. [arguments]: Use standard 'check phase. Change-Id: Ic2591fbe35d7479e120048d334cc202a5e1c9243 Sharlatan Hellseher
2024-02-11gnu: abjad-ext-rmakers: Fix build....* gnu/packages/music.scm (abjad-ext-rmakers) [native-inputs]: Add python-sphinx-autodoc-typehints. Change-Id: Ide0e00b3c12180d341f1ed8052fb4e10a6504499 Sharlatan Hellseher
2024-02-11gnu: abjad-ext-nauert: Simplify package....* gnu/packages/music.scm (abjad-ext-nauert) [build-system]: Swap to pyproject-build-system. [arguments]: Use standard 'check phase. Change-Id: Ica32dd692964d200a81628e82a8333656dc10170 Sharlatan Hellseher
2024-02-11gnu: abjad-ext-nauert: Fix build....* gnu/packages/music.scm (abjad-ext-nauert) [native-inputs]: Add python-sphinx-autodoc-typehints. Change-Id: Iec9dcbf1127ef7dc7b3bcd5a4be9eada51424f4a Sharlatan Hellseher
2024-02-11gnu: python-pytest-socket: Simplify package, enable tests....* gnu/packages/python-check.scm (python-pytest-socket) [build-system]: Swap to pyproject-build-system. [arguments] <#:test-flags>: Disable tests requiring network access. <#:phases>: Use standard phases. Change-Id: Ib7fe0b3dab4e269c00856a10b8ca23acc8c8e180 Sharlatan Hellseher
2024-02-11gnu: python-pyinstrument: Enable tests....* gnu/packages/python-check.scm (python-pyinstrument) [build-system]: Swap to pyproject-build-system. [native-inputs]: Add python-greenlet. Change-Id: I1cd0c3e906fbbdc561e66bae9fe35333f61801cf Sharlatan Hellseher
2024-02-11gnu: python-pyinstrument: Update to 4.6.2....* gnu/packages/python-check.scm (python-pyinstrument): Update to 4.6.2. Change-Id: I28e147272f273c04f7221f6d4f70677aee9a3747 Sharlatan Hellseher
2024-02-11gnu: python-pytest-csv: Simplify package....* gnu/packages/python-check.scm (python-pytest-csv) [build-system]: Swap to pyproejct-build-system. [arguments]: Use standard 'check phase. Change-Id: Iae04747b117bf5b5f9fb3c8b57cd40b8822edd77 Sharlatan Hellseher
2024-02-11gnu: python-beartype: Simplify package....* gnu/packages/python-check.scm (python-beartype) [build-system]: Swap to pyproject-build-system. [arguments]: Use standard 'check phase and <#:test-flags>. Change-Id: I372c5be3b142f0e25d15fd2bac20fc9cd4d8030c Sharlatan Hellseher
2024-02-11gnu: Add python-pandas-vet....* gnu/packages/python-xyz.scm (python-pandas-vet): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Troy Figiel
2024-02-11gnu: google-highway: Fix tests on i686-linux....The tests are supposed to be skipped when there are problems with excess precision. * gnu/packages/cpp.scm (google-highway)[arguments]: Modify phases when building for i686-linux to conditionally patch the tests. Change-Id: I6381a8c9f65196fd1d7d4e4130d784863b634df5 Ricardo Wurmus
2024-02-11gnu: Add binsec....* gnu/packages/ocaml.scm (binsec): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> Change-Id: Ifc57720f97f9ffa8c3558e3cd2d741cdbf73ee3a Sören Tempel
2024-02-11gnu: Add ocaml-grain-dypgen....* gnu/packages/ocaml.scm (ocaml-grain-dypgen): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> Change-Id: I9804cb17863c112d57f0f93b414e568707dae88d Sören Tempel
2024-02-11gnu: Add ocaml-toml....* gnu/packages/ocaml.scm (ocaml-toml): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> Change-Id: Ia3ec7d0261cd6950f1a73641fc65b3ef7ce98f24 Sören Tempel
2024-02-11gnu: Add ocaml-iso8601...* gnu/packages/ocaml.scm (ocaml-iso8601): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> Change-Id: I9463d6f6e3f8ffe43a0cfb1c95edea42fc770323 Sören Tempel
2024-02-11gnu: r-bionero: Update to 1.10.1....* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.1. Change-Id: I26b6c35d8966744bbcb79d98328c9734360f04f3 Ricardo Wurmus
2024-02-11gnu: r-biocset: Update to 1.16.1....* gnu/packages/bioconductor.scm (r-biocset): Update to 1.16.1. Change-Id: Ib758189b9439ec822edb2e85d261b4ccd8618609 Ricardo Wurmus
2024-02-11gnu: r-bgx: Update to 1.68.3....* gnu/packages/bioconductor.scm (r-bgx): Update to 1.68.3. Change-Id: I8aa747dd0a725f84dca1441693ce573a4567f70c Ricardo Wurmus
2024-02-11gnu: r-gofuncr: Update to 1.22.2....* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.22.2. Change-Id: Iba4be0c63d792caddcea69ee77aa94ce6869c1d2 Ricardo Wurmus
2024-02-11gnu: r-glmgampoi: Update to 1.14.2....* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.14.2. Change-Id: Id7265b49246e75d23086dc159da9b4f69a756a7d Ricardo Wurmus
2024-02-11gnu: r-trajectoryutils: Update to 1.10.1....* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.10.1. Change-Id: I18a94851cd139951c2987054c22f01809d2479b3 Ricardo Wurmus
2024-02-11gnu: r-rcas: Update to 1.28.3....* gnu/packages/bioconductor.scm (r-rcas): Update to 1.28.3. [propagated-inputs]: Remove r-ggseqlogo and pandoc; add r-seqlogo. Change-Id: I8be7d8fc4278c8ec2db6932935f70292a4f47049 Ricardo Wurmus
2024-02-11gnu: r-genomeinfodb: Update to 1.38.6....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.6. Change-Id: I57a53d4a73e9b4ce36d97092dab0789d6509484f Ricardo Wurmus
2024-02-11gnu: r-dittoseq: Update to 1.14.2....* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.14.2. Change-Id: I8930f72b47ff92b3b798d9a45fc0598bec1ba53e Ricardo Wurmus
2024-02-11gnu: r-bsgenome: Update to 1.70.2....* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.70.2. Change-Id: I45ba28279e0b843bcd635c2e30fb696e85195ce7 Ricardo Wurmus
2024-02-11gnu: r-animalcules: Update to 1.18.3....* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.18.3. Change-Id: I4f8d5897af796afbce269748c6a5676db72e4baf Ricardo Wurmus
2024-02-11gnu: r-curatedtcgadata: Update to 1.24.1....* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.24.1. Change-Id: I42ae64544b53d6ddd72b948af4093ef4dd31a9c6 Ricardo Wurmus
2024-02-11gnu: r-rhdf5lib: Update to 1.24.2....* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.2. [propagated-inputs]: Remove r-biocstyle and r-stringr. [native-inputs]: Remove r-rmarkdown. Change-Id: I76b1601397bc69651c0b788404c6b0c67d830830 Ricardo Wurmus
2024-02-11gnu: parallel: Update to 20240122....* gnu/packages/parallel.scm (parallel): Update to 20240122. Change-Id: I4e416cbad5b6f4267a9aab7996c9156a861e3ad1 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Andy Tai
2024-02-11gnu: parinfer-rust: Add phase to install editor plugins....* gnu/packages/text-editors.scm (rust-parinfer)[arguments]: Install the bundled Vim and Kakoune plugins. Change-Id: I881315481ec08c59576c4530ae72b877c399fc66 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> (unmatched-parenthesis
2024-02-11gnu: Add python-gguf....* gnu/packages/machine-learning.scm (python-gguf): New variable. Change-Id: Icf6138486cccc5b4c3141424baccf17c4edb3449 Signed-off-by: Andreas Enge <andreas@enge.fr> David Pflug
2024-02-10services: Add ‘virtual-build-machine’ service....* gnu/services/virtualization.scm (<virtual-build-machine>): New record type. (%build-vm-ssh-port, %build-vm-secrets-port, %x86-64-intel-cpu-models): New variables. (qemu-cpu-model-for-date, virtual-build-machine-ssh-port) (virtual-build-machine-secrets-port): New procedures. (%minimal-vm-syslog-config, %virtual-build-machine-operating-system): New variables. (virtual-build-machine-default-image): (virtual-build-machine-account-name) (virtual-build-machine-accounts) (build-vm-shepherd-services) (initialize-build-vm-substitutes) (build-vm-activation) (virtual-build-machine-offloading-ssh-key) (virtual-build-machine-activation) (virtual-build-machine-secret-root) (check-vm-availability) (build-vm-guix-extension): New procedures. (initialize-hurd-vm-substitutes): Remove. (hurd-vm-activation): Rewrite in terms of ‘build-vm-activation’. * gnu/system/vm.scm (linux-image-startup-command): New procedure. (operating-system-for-image): Export. * gnu/tests/virtualization.scm (run-command-over-ssh): New procedure, extracted from… (run-childhurd-test): … here. [test]: Adjust accordingly. (%build-vm-os): New variable. (run-build-vm-test): New procedure. (%test-build-vm): New variable. * doc/guix.texi (Virtualization Services)[Virtual Build Machines]: New section. (Build Environment Setup): Add cross-reference. Change-Id: I0a47652a583062314020325aedb654f11cb2499c Ludovic Courtès
2024-02-10marionette: Add #:peek? to ‘wait-for-tcp-port?’....* gnu/build/marionette.scm (wait-for-tcp-port): Add #:peek? parameter and honor it. Change-Id: Ie7515a5223299390ab8af6fe5aa3cf63ba5c8078 Ludovic Courtès
2024-02-10vm: Add ‘cpu-count’ field to <virtual-machine>....* gnu/system/vm.scm (<virtual-machine>)[cpu-count]: New field. (virtual-machine-compiler): Honor it. Change-Id: I907a89365f32ac7a9981c4ae5f59cf6eb199c3cc Ludovic Courtès
2024-02-10vm: Export <virtual-machine> accessors....* gnu/system/vm.scm: Export. Change-Id: If65d96f4052d070af5baee26f3dd9b233b8480f4 Ludovic Courtès
2024-02-10vm: Add ‘date’ field to <virtual-machine>....* gnu/system/vm.scm (<virtual-machine>)[date]: New field. (virtual-machine-compiler): Honor it. Change-Id: Idab1c152466d57cbc6784c031a99fdfd37080bcb Ludovic Courtès
2024-02-10services: secret-service: Make the endpoint configurable....Until now, the secret service had a hard-coded TCP endpoint on port 1004. This change lets users specify arbitrary socket addresses. * gnu/build/secret-service.scm (socket-address->string): New procedure, taken from Shepherd. (secret-service-send-secrets): Replace ‘port’ by ‘address’ and adjust accordingly. (secret-service-receive-secrets): Likewise. * gnu/services/virtualization.scm (secret-service-shepherd-services): Likewise. (secret-service-operating-system): Add optional ‘address’ parameter and honor it. Adjust ‘start’ method accordingly. Change-Id: I87a9514f1c170dca756ce76083d7182c6ebf6578 Ludovic Courtès
2024-02-10gnu: openmolar-1: Update to release 1.1.6-g81838c8 and partial runtime fix....Fixes <https://issues.guix.gnu.org/29365>. WebKit was removed from Qt5 in favor of WebEngine; upstream addressed this in their last stable release, in 2018. The package still fails at runtime: this commit lays the ground for further fixes. * gnu/packages/medical.scm (openmolar-1): Update to release 1.1.6-g81838c8. [arguments]: Extend 'patch-/usr phase to source file localsettings.py. [inputs]: Add python-pyqtwebengine. [propagated-inputs]: Add qtwebengine-5. Change-Id: Ia4e4c052397201c26834dec2358ca5c20beb581d Signed-off-by: Ludovic Courtès <ludo@gnu.org> Marco Rimoldi
2024-02-10gnu: Add python-scikit-opt....* gnu/packages/python-science.scm (python-scikit-opt): New variable. Change-Id: I47d6b35d9658a37a242b4db61d293fa7efd33802 Signed-off-by: Ludovic Courtès <ludo@gnu.org> TimotheeMathieu
2024-02-10gnu: gnupg: Fix cross-compilation....* gnu/packages/gnupg.scm (gnupg)[arguments]: Pass libraries prefixes when cross-crompiling. Change-Id: I461ba02ddf5bb23277bd6685c2106e4ad37e2184 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Mathieu Othacehe
2024-02-10gnu: vim: Update to 9.1.0059....* gnu/packages/vim.scm (vim): Update to 9.1.0059. Change-Id: Idf89d04a6c4e2297bcaad7a8b275de4a124001a9 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Nguyễn Gia Phong
2024-02-10gnu: emulators: Adjust copyright header....This is follow up commit 9ffdcb249278d9bb95ffb6c6e9f94b675bb1068c. * gnu/packages/emulators.scm: Update copyright for "Felix Gruber <felgru@posteo.net>". * gnu/packages/simulation.scm: Remove "Copyright © 2024 Felix Gruber <felgru@posteo.net>". Change-Id: I3f39abb0fbe05e7c6af9715fb6cc41c20b6f0a45 Sharlatan Hellseher
2024-02-10gnu: fcft: Enable shaping support....While utf8proc is an optional dependency, it is required for shaping support. Without utf8proc, fcft_rasterize_text_run_utf32() is a no-op. This is a popular function used—among other things—by yambar, foot, fuzzel and fnott. Therefore, many other Linux distributions (Arch, Debian, Fedora, …) enable this feature and I think it would be nice to have in Guix as well. * gnu/packages/fontutils.scm (fcft): Depend on utf8proc. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I7489dbc7a42ffcca509d090df7d2a6250bf996ff Sören Tempel
2024-02-10gnu: lldb: Update to 17.0.6....* gnu/packages/llvm.scm (lldb): Update to 17.0.6. [inputs]: Change from LLVM-15 and CLANG-15 to LLVM-17 and CLANG-17. Change-Id: Iad04ee722c81ecb223ea4d57d25ea57ca7df59a0 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Greg Hogan
2024-02-10gnu: odamex: Remove package labels....* gnu/packages/games.scm (odamex) [inputs]: Remove labels. Change-Id: Ie4b97a3dfaa3a0ce3a0e7c5c49ed52fe4e222480 Sharlatan Hellseher
2024-02-10gnu: odamex: Unbundle some libraries....* gnu/packages/games.scm (odamex) [snippet]: Remove some bundled libraries which may be replaced by inputs. [arguments] <#:configure-flags>: Add options to build client, master and server. Do not use internal libs explicitly. [native-inputs]: Add pkg-config. Change-Id: I1974febb2f5f37d963ecb5b663d17a330ba23129 Sharlatan Hellseher
2024-02-10gnu: odamex: Update to 10.4.0....* gnu/packages/games.scm (odamex): Update to 10.4.0. [inputs]: Add fltk, jsoncpp, libpng, miniupnpc, portmidi and protobuf. Change-Id: I371d18498640e15a7bfae527fea12d9432368f50 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> David Pflug
2024-02-10gnu: sameboy: Update to 0.16.2....* gnu/packages/emulators.scm (sameboy): Update to 0.16.2. Change-Id: I86a31cfca9e69d63d3cb6a13d5db88a6b1abe2a8 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Felix Gruber
2024-02-10gnu: ocrad: Update to 0.29...* gnu/packages/ocr.scm (ocrad): Update to 0.29 Change-Id: I9069a4b20016ed38961cd2606a841933b3151e1a Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Andy Tai