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2024-02-27gnu: pspp: Update to 2.0.0.Andy Tai
* gnu/packages/statistics.scm (pspp): Update to 2.0.0 [arguments](phases): Patch test case to make pass due to locale [native-inputs]: Switch from Python 2 to Python 3 Change-Id: I9feeab72789347033d2df8f23bda9ea27aaa7dd9 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-02-27gnu: petsc: Reduce closure size.Lars Bilke
Reduces closure size from 828 MiB to 463 MiB (44%) by removing references to build dependencies such as GCC. * gnu/packages/maths.scm (petsc)[arguments]: Add ‘clear-reference-to-compiler’ phase. In ‘clean-install’ phase, also remove “configure-hash”. Change-Id: I2e6900747b2118546f0a39ceb109b3f2f90e6949 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-02-27gnu: libgit2-1.4: Update to 1.4.6.Efraim Flashner
* gnu/packages/version-control.scm (libgit2-1.4): Update to 1.4.6. Change-Id: Ieb470e93d6be9a2e45585b747efb695ef9f33161
2024-02-27gnu: l2md: Fix build on 32-bit systems.Efraim Flashner
* gnu/packages/mail.scm (l2md)[source]: Add snippet to gate macOS build fix to only apply when building for Apple devices. Change-Id: Id303a89ec78ce160cfb6ebed232a841c8283e812
2024-02-27gnu: libgit2-1.7: Update to 1.7.2.Efraim Flashner
* gnu/packages/version-control.scm (libgit2-1.7): Update to 1.7.2. Change-Id: I60ad4aa2a5b29b027755cf8add848bd4a8b71282
2024-02-26gnu: libgit2: Introduce ‘libgit2-1.5’ variable.Ludovic Courtès
* gnu/packages/version-control.scm (libgit2): Rename to… (libgit2-1.5): … this. (libgit2): Alias for ‘libgit2-1.5’. Change-Id: I7f6aff23df3b968d914736fe723dcdd435176ce2
2024-02-26gnu: guile-git: Depend on libgit2 1.7.Ludovic Courtès
* gnu/packages/guile.scm (guile-git)[inputs]: Replace LIBGIT2-1.3 with LIBGIT2-1.7. Change-Id: Ia386f977b0888b7bd9b26443ac6150428fda2155
2024-02-26gnu: guile-git: Update to 0.6.0.Ludovic Courtès
* gnu/packages/guile.scm (guile-git): Update to 0.6.0. [source]: Remove ‘patches’ field. * gnu/packages/patches/guile-git-adjust-for-libgit2-1.2.0.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Change-Id: I49300461389bc24a9802fbda5e374a330ffc3715
2024-02-26gnu: libgit2: Set ‘GITTEST_FLAKY_STAT’ when running tests on GNU/Hurd.Ludovic Courtès
* gnu/packages/version-control.scm (libgit2)[arguments]: Install ‘pre-check’ phase when ‘target-hurd?’ returns true. Change-Id: I664d4aa2a0ad76a10a47ae7bc3c5912756972b46
2024-02-26gnu: Remove python-nltk-3.4.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-nltk-3.4): Remove variable. Change-Id: I865380c0428d459147c0980065719c32bf67075a
2024-02-26gnu: python-lunr: Update to 0.7.0.post1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-lunr): Update to 0.7.0.post1. [build-system]: Use pyproject-build-system. [arguments]: Disable tests that need nodejs. [native-inputs]: Remove python-mock; add python-coverage, python-hatch-fancy-pypi-readme, python-hatchling, python-pytest-timeout, and python-tox. [propagated-inputs]: Remove python-nltk-3.4; add python-importlib-metadata and python-typing-extensions. Change-Id: Ide9b0d98878dd8972d883c1c0e391a9a4b660eba
2024-02-26gnu: Add pass-coffinChristian Miller via Guix-patches via
* gnu/packages/password-utils.scm (pass-coffin): New variable. Reviewed-by: Steve George <steve@futurile.net> Change-Id: I2fdf6c755b9b75780c5a3c0304e5b961a15640a4 Signed-off-by: Andreas Enge <andreas@enge.fr>
2024-02-26gnu: Add paritwine.Andreas Enge
* gnu/packages/algebra.scm (paritwine): New variable. Change-Id: If2a55dd4a42d4d27a67249bd11592635ade20351
2024-02-26gnu: cm: Update to 0.4.3.Andreas Enge
* gnu/packages/algebra.scm (cm): Update to 0.4.3. [inputs]: Add flint. Change-Id: Icb1a01a2abcdf6a0685503a0d032a21b42d464d6
2024-02-26gnu: r-dmrseq: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.22.1. Change-Id: I7c05a4927a3984917c6de7bc5daa3f28794894d7
2024-02-26gnu: r-beachmat: Update to 2.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.18.1. Change-Id: I854c4c21cad66e3fb2bfe63fe01c31c3aff7d109
2024-02-26gnu: r-hdf5array: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.30.1. Change-Id: I48d733554b9c74e10d29b123008ba6d20fa85641
2024-02-26gnu: r-variancepartition: Update to 1.32.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.5. Change-Id: I9195cbe28f85001bcd91fa3d57f0017db5b352b7
2024-02-26gnu: r-a4: Update to 1.50.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-a4): Update to 1.50.1. Change-Id: If07b255590ad99146a81729af073aac67cd535d4
2024-02-26gnu: r-chippeakanno: Update to 3.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.36.1. Change-Id: I133f7ca3032f5f5722a8d5d9cbf1bf1da42ff4a9
2024-02-26gnu: r-seqarray: Update to 1.42.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.2. Change-Id: I6b4915c8dbdf14054125cac33bfddde4605fbc58
2024-02-26gnu: r-edger: Update to 4.0.16.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.16. Change-Id: I542bbe7f290a5282f76eea7b88f605f6fa714624
2024-02-26gnu: r-anf: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-anf): Update to 1.24.1. Change-Id: I5843d257e4312101fb1b0dc9bbb49bd088bb3b91
2024-02-26gnu: r-anvil: Update to 1.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.14.2. Change-Id: I91fa1253e5f174d9d1d445edd873ceb23a783787
2024-02-26gnu: r-mclust: Update to 6.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mclust): Update to 6.1. Change-Id: I52a5bd83b26e0d1d35e494e6dab1e6dec594fdfc
2024-02-26gnu: r-runit: Update to 0.4.33.Ricardo Wurmus
* gnu/packages/statistics.scm (r-runit): Update to 0.4.33. Change-Id: I0690643ff91f9ec7e41d1dba68d23eae1d981d8b
2024-02-26gnu: r-gdtools: Update to 0.3.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gdtools): Update to 0.3.6. Change-Id: I87b02d5665f60c80d28085895b2693cda94f95bc
2024-02-26gnu: r-ggdendro: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.2.0. Change-Id: I2a046a754ff08c83367e39e8692722611ebcb500
2024-02-26gnu: r-ggplot2: Update to 3.5.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.5.0. Change-Id: I65435f9ddb69a9c62c79edd4eadd8c3d601251c6
2024-02-26gnu: r-boot: Update to 1.3-30.Ricardo Wurmus
* gnu/packages/statistics.scm (r-boot): Update to 1.3-30. Change-Id: I566d221fb15305381d21816451c6b6ad9ded96e4
2024-02-26gnu: r-rtweet: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rtweet): Update to 2.0.0. Change-Id: Icbcf69d53421ec7b556e52dbc6b375f0561b9fb3
2024-02-26gnu: r-lwgeom: Update to 0.2-14.Ricardo Wurmus
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-14. Change-Id: I9a3a32104dbacfcdd85361af9849b9d1b4a1bba1
2024-02-26gnu: r-readtext: Update to 0.91.Ricardo Wurmus
* gnu/packages/cran.scm (r-readtext): Update to 0.91. Change-Id: I14ccdf618f63cafa6d45eaacee3471c2eab74179
2024-02-26gnu: r-dials: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-dials): Update to 1.2.1. Change-Id: Id0c6d2ee8da567702fe8a6ac3148a3df2c069cea
2024-02-26gnu: r-fastshap: Update to 0.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-fastshap): Update to 0.1.1. Change-Id: Ie2bd2570b427895d6780d762bd121c9962bd2a88
2024-02-26gnu: r-loo: Update to 2.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-loo): Update to 2.7.0. [propagated-inputs]: Add r-posterior. Change-Id: I7d4accaa9762de855c739cb65ee6b517086ec8e1
2024-02-26gnu: r-sccore: Update to 1.0.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-sccore): Update to 1.0.5. Change-Id: Ibbf7b22f5ba9340e7f748b1a12bf7b3a28dff16a
2024-02-26gnu: r-afex: Update to 1.3-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-afex): Update to 1.3-1. Change-Id: Idf37d0963aee6233a1a7a0dfd568efbdc9225607
2024-02-26gnu: r-ggeffects: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 1.5.0. Change-Id: If6c506e395566ccf34254b4c205717efeb10234b
2024-02-26gnu: r-mosaic: Update to 1.9.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-mosaic): Update to 1.9.1. Change-Id: Iae1ec6425ea9dcf82102cc8c6856265baef9ddae
2024-02-26gnu: r-superlearner: Update to 2.0-29.Ricardo Wurmus
* gnu/packages/cran.scm (r-superlearner): Update to 2.0-29. Change-Id: I59aaaa9a2195e217966c589aab940f7bfdc6466d
2024-02-26gnu: r-nodbi: Update to 0.10.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-nodbi): Update to 0.10.2. [native-inputs]: Add r-knitr. Change-Id: I052f662b87076c6f3e46129a0195c5e4415c6a4c
2024-02-26gnu: r-officer: Update to 0.6.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-officer): Update to 0.6.5. Change-Id: I709c8af9feb02b838dc6939ec8348fb231ca881f
2024-02-26gnu: r-renv: Update to 1.0.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-renv): Update to 1.0.4. Change-Id: I1ed257f239663df37a02908bf204f763222b2e67
2024-02-26gnu: r-ctrdata: Update to 1.17.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ctrdata): Update to 1.17.2. Change-Id: I019f971fe6cc8c34b63ebdff407e1f2e1ed6b98f
2024-02-26gnu: r-shape: Update to 1.4.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-shape): Update to 1.4.6.1. Change-Id: Idcb756d0d016d9ed519ccdf3c0be4cd795277222
2024-02-26gnu: r-secretbase: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-secretbase): Update to 0.3.0. Change-Id: Ic9e75a8746dd0a4d2c5a8ee64f4e242dfeda5fe5
2024-02-26gnu: r-gprofiler2: Update to 0.2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-gprofiler2): Update to 0.2.3. Change-Id: Ic6d1fcedc78d98c7d9dde719a98db283e8e3d9ef
2024-02-26gnu: r-ggside: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggside): Update to 0.3.0. Change-Id: I656cae1ae4a08f767b5426b154670c2581853430
2024-02-26gnu: r-arrow: Update to 14.0.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-arrow): Update to 14.0.2.1. Change-Id: Ie8b236a1d8b9b5786bb83f26a8463343d329faba
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