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2020-12-09gnu: r-biobroom: Update to 1.22.0.zimoun
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.22.0.
2020-12-09gnu: r-bioassayr: Update to 1.28.0.zimoun
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.0.
2020-12-09gnu: r-chemminer: Update to 3.42.0.zimoun
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.0.
2020-12-09gnu: r-bigpint: Update to 1.6.0.zimoun
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.6.0.
2020-12-09gnu: r-bigmemoryextras: Update to 1.38.0.zimoun
* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.38.0.
2020-12-09gnu: r-biggr: Update to 1.26.0.zimoun
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.26.0.
2020-12-09gnu: r-hyperdraw: Update to 1.42.0.zimoun
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.42.0.
2020-12-09gnu: r-hypergraph: Update to 1.62.0.zimoun
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.62.0.
2020-12-09gnu: r-rsbml: Update to 2.48.0.zimoun
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.48.0.
2020-12-09gnu: r-bifet: Update to 1.10.0.zimoun
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.10.0.
2020-12-09gnu: r-bicare: Update to 1.48.0.zimoun
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.48.0.
2020-12-09gnu: r-bhc: Update to 1.42.0.zimoun
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.42.0.
2020-12-09gnu: r-bgx: Update to 1.56.0.zimoun
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.56.0.
2020-12-09gnu: r-bgmix: Update to 1.50.0.zimoun
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.50.0.
2020-12-09gnu: r-unifiedwmwqpcr: Update to 1.26.0.zimoun
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.26.0.
2020-12-09gnu: r-htqpcr: Update to 1.44.0.zimoun
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.44.0.
2020-12-09gnu: r-variancepartition: Update to 1.20.0.zimoun
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.20.0.
2020-12-09gnu: r-variantfiltering: Update to 1.26.0.zimoun
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.26.0.
2020-12-09gnu: r-timeseriesexperiment: Update to 1.8.0.zimoun
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.8.0.
2020-12-09gnu: r-wavcluster: Update to 2.24.0.zimoun
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.24.0.
2020-12-09gnu: r-reqon: Update to 1.36.0.zimoun
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.36.0.
2020-12-09gnu: r-seqbias: Update to 1.38.0.zimoun
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.38.0.
2020-12-09gnu: r-gdsfmt: Update to 1.26.0.zimoun
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.0.
2020-12-09gnu: r-roc: Update to 1.66.0.zimoun
* gnu/packages/bioconductor.scm (r-roc): Update to 1.66.0.
2020-12-09gnu: r-genie3: Update to 1.12.0.zimoun
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.12.0.
2020-12-09gnu: r-cicero: Update to 1.8.0.zimoun
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.0.
2020-12-09gnu: r-rcistarget: Update to 1.10.0.zimoun
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.10.0.
2020-12-09gnu: r-depecher: Update to 1.6.0.zimoun
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.6.0.
2020-12-09gnu: r-mixomics: Update to 6.14.0.zimoun
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.0.
2020-12-09gnu: r-flowsom: Update to 1.22.0.zimoun
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.22.0.
2020-12-09gnu: r-cytoml: Update to 2.2.1.zimoun
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.1.
2020-12-09gnu: r-opencyto: Update to 2.2.0.zimoun
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.2.0.
2020-12-09gnu: r-flowstats: Update to 4.2.0.zimoun
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.2.0.
2020-12-09gnu: r-flowworkspace: Update to 4.2.0.zimoun
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.2.0. [inputs]: Add zlib. [propagated-inputs]: Add r-aws-s3 and r-aws-signature. Remove r-stringr.
2020-12-09gnu: Add r-aws-s3.zimoun
* gnu/packages/cran.scm (r-aws-s3): New variable.
2020-12-09gnu: Add r-aws-signature.zimoun
* gnu/packages/cran.scm (r-aws-signature): New variable.
2020-12-09gnu: r-rprotobuflib: Update to 2.2.0.zimoun
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.2.0.
2020-12-09gnu: r-flowclust: Update to 3.28.0.zimoun
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.28.0.
2020-12-09gnu: r-flowviz: Update to 1.54.0.zimoun
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.54.0.
2020-12-09gnu: r-ncdfflow: Update to 2.36.0.zimoun
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.36.0.
2020-12-09gnu: r-flowmeans: Update to 1.50.0.zimoun
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.50.0.
2020-12-09gnu: r-flowcore: Update to 2.2.0.zimoun
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.2.0. [propagated-inputs]: Add r-s4vectors.
2020-12-09gnu: r-cytolib: Update to 2.2.0.zimoun
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.0. [native-inputs]: Add pkg-config.
2020-12-09gnu: r-consensusclusterplus: Update to 1.54.0.zimoun
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.54.0.
2020-12-09gnu: r-flowutils: Update to 1.54.0.zimoun
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.54.0.
2020-12-09gnu: r-rsubread: Update to 2.4.2.zimoun
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.2.
2020-12-09gnu: r-annotatr: Update to 1.16.0.zimoun
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.16.0.
2020-12-09gnu: r-biosigner: Update to 1.18.0.zimoun
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.0.
2020-12-09gnu: r-ropls: Update to 1.22.0.zimoun
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.22.0.
2020-12-09gnu: r-multidataset: Update to 1.18.0.zimoun
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.0.
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an>Ludovic Courtès 2015-11-26services: Add network-manager-service....* gnu/services/networking.scm (network-manager-service): New procedure. (network-manager-service-type, %network-manager-activation): New variables. (network-manager-dmd-service): New procedure. 宋文武 2015-11-25services: xorg: Export additional symbols....'slim-configuration' and 'slim-service-type' are needed if one wishes to use 'modify-services' on a service list that includes the slim service. * gnu/services/xorg.scm: Export 'slim-configuration' and 'slim-service-type'. David Thompson 2015-11-25services: dmd: Spawn a REPL upon failure to load a service definition....Fixes <http://bugs.gnu.org/19779>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/services/dmd.scm (dmd-configuration-file)[config]: Wrap 'primitive-load' calls in 'call-with-error-handling'. Ludovic Courtès 2015-11-25services: dmd: Strip the default list of modules....* gnu/services/dmd.scm (%default-imported-modules): Remove (gnu build file-systems). (%default-modules): Likewise, and remove (ice-9 ftw). * gnu/services/base.scm (file-system-service-type): Add 'modules' and 'imported-modules' fields. Ludovic Courtès 2015-11-25services: dmd: Add 'modules' and 'imported-modules' fields....* gnu/services/dmd.scm (%default-imported-modules, %default-modules): New variables. * gnu/services/dmd.scm (<dmd-service>)[modules, imported-modules]: New field. * gnu/services/dmd.scm (dmd-service-file-name, dmd-service-file): New procedures. (dmd-configuration-file)[modules]: Compute based on the 'imported-modules' field of SERVICES. (dmd-configuration-file): Remove 'use-modules' form. Use 'dmd-service-file', and call 'primitive-load' on each file. * doc/guix.texi (dmd Services): Document the new fields. Ludovic Courtès 2015-11-24services: dmd: Error out upon unmet dmd requirements....* gnu/services/dmd.scm (assert-no-duplicates): Rename to... (assert-valid-graph): ... this. [provisions]: New variable. [assert-satisfied-requirements]: New procedure. Use it. * tests/guix-system.sh: Add test with unmet dmd requirements. Ludovic Courtès 2015-11-20gnu: services: Fix typo in gpm-dmd-service....* gnu/services/base.scm (gpm-dmd-service): s/dmd/gpm/ David Thompson 2015-11-19services: Add udev-rule procedure....* gnu/services/base.scm (udev-rule): New procedure. (kvm-udev-rule): Rewrite as variable in terms of udev-rule. Ricardo Wurmus 2015-11-18services: Export udev-configuration procedures....* gnu/services/base.scm (udev-configuration, udev-configuration?, udev-configuration-rules): Export. Ricardo Wurmus 2015-11-07services: Add 'gpm-service'....* gnu/services/base.scm (<gpm-configuration>): New record type. (gpm-dmd-service): New procedure. (gpm-service-type): New variable. (gpm-service): New procedure. * doc/guix.texi (Base Services): Document it. Ludovic Courtès 2015-11-03system: Rename (gnu system linux) to (gnu system pam)....* gnu/system/linux.scm: Rename to... * gnu/system/pam.scm: ... this. * gnu-system.am (GNU_SYSTEM_MODULES): Adjust accordingly. * gnu.scm, gnu/services/base.scm, gnu/services/desktop.scm, gnu/services/networking.scm, gnu/services/ssh.scm, gnu/services/xorg.scm, gnu/system.scm, gnu/system/vm.scm: Likewise. Ludovic Courtès 2015-11-03services: Add 'guix-publish-service'....* gnu/services/base.scm (<guix-publish-configuration>): New record type. (guix-publish-dmd-service): New procedure. (%guix-publish-accounts, guix-publish-service-type): New variables. (guix-publish-service): New procedure. * doc/guix.texi (Invoking guix publish): Add xref to 'guix-publish-service' anchor. (Base Services): Document 'guix-publish-service'. Ludovic Courtès 2015-11-02services: udisks: Add UDisks to the system profile....* gnu/services/desktop.scm (udisks-service-type): Extend PROFILE-SERVICE-TYPE. Ludovic Courtès 2015-11-02services: avahi: Add Avahi to the system profile....* gnu/services/avahi.scm (avahi-service-type): Extend PROFILE-SERVICE-TYPE. (avahi-service): Adjust docstring. * doc/guix.texi (Networking Services): Adjust accordingly. * gnu/system/examples/desktop.tmpl (packages): Remove AVAHI. Ludovic Courtès 2015-11-02services: slim: Add xterm to the system profile....* gnu/services/xorg.scm (slim-service-type): Extend PROFILE-SERVICE-TYPE. * gnu/system/examples/desktop.tmpl (packages): Remove XTERM. Ludovic Courtès 2015-11-02services: wicd: Add Wicd to the system profile....* gnu/services/networking.scm (wicd-service-type): Extend PROFILE-SERVICE-TYPE. (wicd-service): Mention it in docstring. * doc/guix.texi (Networking Services): Update documentation accordingly. * gnu/system/examples/desktop.tmpl (packages): Remove WICD. Ludovic Courtès 2015-11-01Revert "services: polkit: Use the right executable name for PAM."...This reverts commit 7f39e181dfb34db8f245f3ffafe34eec9cee910d. Polkit actually uses the name "polkit-1" in calls to 'pam_start'. Ludovic Courtès 2015-11-01services: Add 'udisks-service'....* gnu/services/desktop.scm (<udisks-configuration>): New record type. (udisks-service-type): New variable. (udisks-service): New procedure. (%desktop-services): Use it. * doc/guix.texi (Desktop Services): Document it. Ludovic Courtès 2015-11-01services: 'polkit-service-type' can now be extended....* gnu/packages/polkit.scm (polkit)[source]: Adjust snippet so that rules and actions are looked for under /etc/polkit-1. * gnu/services/desktop.scm (<polkit-configuration>): New record type. (polkit-directory, polkit-etc-files, polkit-setuid-programs): New procedures. (polkit-service-type)[compose, extend]: New fields. (polkit-service): Refine docstring. (colord-service-type): Extend POLKIT-SERVICE-TYPE. (elogind-configuration-file): Extend POLKIT-SERVICE-TYPE. * doc/guix.texi (Desktop Services): Update 'polkit-service' documentation. Ludovic Courtès 2015-10-31Merge branch 'dbus-update'Ludovic Courtès
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