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2021-06-05gnu: r-apeglm: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.14.0.
2021-06-05gnu: r-qvalue: Update to 2.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.24.0.
2021-06-05gnu: r-oligo: Update to 1.56.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.56.0.
2021-06-05gnu: r-oligoclasses: Update to 1.54.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.54.0.
2021-06-05gnu: r-geneplotter: Update to 1.70.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.70.0.
2021-06-05gnu: r-zlibbioc: Update to 1.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.sc
2024-04-08gexp: Add #:guile parameter to ‘gexp->file’ and ‘scheme-file’....This brings ‘gexp->file’ in line with its documentation and mirrors what’s done for ‘gexp->script’ and ‘program-file’. Fixes <https://issues.guix.gnu.org/69401>. * guix/gexp.scm (gexp->file): Add #:guile, as was already documented. (<scheme-file>)[guile]: New field. (scheme-file): Add #:guile. (scheme-file-compiler): Honor ‘guile’ field. * tests/gexp.scm ("gexp->file") ("gexp->file + file-append", "gexp->file + #:splice?") ("gexp->file, cross-compilation") ("gexp->file, cross-compilation with default target") Add #:guile to ‘gexp->file’ calls. ("gexp-modules deletes duplicates") ("gexp->derivation & with-imported-module & computed module") ("gexp->derivation & with-extensions", "scheme-file"): Likewise for ‘scheme-file’ calls. Change-Id: I47536063d5e411e561ec321e535267e92dd06044 Reported-by: Efraim Flashner <efraim@flashner.co.il> Change-Id: I58d653c7fbe65c665bafcbd332ac9b264ddeab64 Ludovic Courtès
gnu: r-tximport: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.20.0.
2021-06-05gnu: r-topgo: Update to 2.44.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.44.0.
2021-06-05gnu: r-systempiper: Update to 1.26.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.2. [propagated-inputs]: Add r-testthat.
2021-06-05gnu: r-sva: Update to 3.40.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sva): Update to 3.40.0.
2021-06-05gnu: r-summarizedexperiment: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.22.0.
2021-06-05gnu: r-structuralvariantannotation: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.0. [propagated-inputs]: Add r-rlang. [native-inputs]: Add r-knitr.
2021-06-05gnu: r-slingshot: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.0.0. [propagated-inputs]: Remove r-ape; add r-s4vectors and r-trajectoryutils.
2021-06-05gnu: r-shortread: Update to 1.50.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.50.0.
2021-06-05gnu: r-seqpattern: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.24.0.
2021-06-05gnu: r-seqlogo: Update to 1.58.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.58.0.
2021-06-05gnu: r-rtracklayer: Update to 1.52.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.0. [propagated-inputs]: Add r-biocio and r-restfulr.
2021-06-05gnu: r-rsamtools: Update to 2.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.8.0.
2021-06-05gnu: r-rhdf5filters: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.4.0.
2021-06-05gnu: r-reportingtools: Update to 2.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.0.
2021-06-05gnu: r-regioner: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.24.0.
2021-06-05gnu: r-rcas: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.18.0. [propagated-inputs]: Add r-knitr.
2021-06-05gnu: r-rbgl: Update to 1.68.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.68.0.
2021-06-05gnu: r-protgenerics: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.24.0.
2021-06-05gnu: r-pcamethods: Update to 1.84.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.84.0.
2021-06-05gnu: r-organismdbi: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.34.0.
2021-06-05gnu: r-mzid: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.30.0.
2021-06-05gnu: r-msnbase: Update to 2.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.18.0. [propagated-inputs]: Remove r-preprocesscore; add r-mscoreutils.
2021-06-05gnu: r-mutationalpatterns: Update to 3.2.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.2.0.
2021-06-05gnu: r-methylkit: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.18.0.
2021-06-05gnu: r-limma: Update to 3.48.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.0.
2021-06-05gnu: r-keggrest: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.32.0.
2021-06-05gnu: r-interactivedisplaybase: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.30.0.
2021-06-05gnu: r-impute: Update to 1.66.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-impute): Update to 1.66.0.
2021-06-05gnu: r-rhtslib: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 1.24.0.
2021-06-05gnu: r-hpar: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.34.0.
2021-06-05gnu: r-gseabase: Update to 1.54.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.54.0.
2021-06-05gnu: r-gostats: Update to 2.58.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.58.0.
2021-06-05gnu: r-genomicranges: Update to 1.44.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.44.0.
2021-06-05gnu: r-genomicfiles: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.28.0.
2021-06-05gnu: r-genomicfeatures: Update to 1.44.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.0. [propagated-inputs]: Add r-biocio.
2021-06-05gnu: r-genomicalignments: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.28.0.
2021-06-05gnu: r-genomeinfodb: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.0.
2021-06-05gnu: r-genomation: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.24.0. [propagated-inputs]: Remove r-runit.
2021-06-05gnu: r-geneoverlap: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.28.0.
2021-06-05gnu: r-genefilter: Update to 1.74.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.74.0.
2021-06-05gnu: r-gage: Update to 2.42.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gage): Update to 2.42.0.
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