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2023-06-03gnu: r-scico: Update to 1.4.0....* gnu/packages/cran.scm (r-scico): Update to 1.4.0. Ricardo Wurmus
2023-06-03gnu: r-shapforxgboost: Update to 0.1.3....* gnu/packages/cran.scm (r-shapforxgboost): Update to 0.1.3. Ricardo Wurmus
2023-06-03gnu: r-projpred: Update to 2.6.0....* gnu/packages/cran.scm (r-projpred): Update to 2.6.0. [propagated-inputs]: Remove r-ucminf; add r-scales. Ricardo Wurmus
2023-06-03gnu: r-stanheaders: Update to 2.26.26....* gnu/packages/cran.scm (r-stanheaders): Update to 2.26.26. Ricardo Wurmus
2023-06-03gnu: r-regsem: Update to 1.9.5....* gnu/packages/cran.scm (r-regsem): Update to 1.9.5. Ricardo Wurmus
2023-06-03gnu: r-adabag: Update to 5.0....* gnu/packages/cran.scm (r-adabag): Update to 5.0. [propagated-inputs]: Add r-consrank, r-dplyr, and r-tidyr. Ricardo Wurmus
2023-06-03gnu: r-assertive-code: Update to 0.0-4....* gnu/packages/cran.scm (r-assertive-code): Update to 0.0-4. Ricardo Wurmus
2023-06-03gnu: r-ontologyindex: Update to 2.11....* gnu/packages/cran.scm (r-ontologyindex): Update to 2.11. Ricardo Wurmus
2023-06-03gnu: r-performance: Update to 0.10.4....* gnu/packages/cran.scm (r-performance): Update to 0.10.4. Ricardo Wurmus
2023-06-03gnu: r-biasedurn: Update to 2.0.10....* gnu/packages/cran.scm (r-biasedurn): Update to 2.0.10. Ricardo Wurmus
2023-06-03gnu: r-maptools: Update to 1.1-7....* gnu/packages/cran.scm (r-maptools): Update to 1.1-7. Ricardo Wurmus
2023-06-03gnu: r-catdap: Update to 1.3.7....* gnu/packages/cran.scm (r-catdap): Update to 1.3.7. [propagated-inputs]: Add r-rcolorbrewer. Ricardo Wurmus
2023-06-03gnu: r-ucminf: Update to 1.2.0....* gnu/packages/cran.scm (r-ucminf): Update to 1.2.0. Ricardo Wurmus
2023-06-03gnu: r-sp: Update to 1.6-1....* gnu/packages/cran.scm (r-sp): Update to 1.6-1. Ricardo Wurmus
2023-06-03gnu: r-ggrastr: Update to 1.0.2....* gnu/packages/cran.scm (r-ggrastr): Update to 1.0.2. Ricardo Wurmus
2023-06-03gnu: r-ggpicrust2: Update to 1.7.0....* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.0. [propagated-inputs]: Add r-circlize. [native-inputs]: Add r-knitr. Ricardo Wurmus
2023-06-03gnu: r-rmarkdown: Update to 2.22....* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.22. [properties]: Add hints to the updater. Ricardo Wurmus
2023-06-03gnu: r-rgdal: Update to 1.6-7....* gnu/packages/cran.scm (r-rgdal): Update to 1.6-7. [properties]: Add hints to the updater. Ricardo Wurmus
2023-06-03gnu: Add r-consrank....* gnu/packages/cran.scm (r-consrank): New variable. Ricardo Wurmus
2023-06-02gnu: Add r-singlet....* gnu/packages/bioinformatics.scm (r-singlet): New variable. Ricardo Wurmus
2023-06-02gnu: Add r-rcppml/devel....* gnu/packages/machine-learning.scm (r-rcppml/devel): New variable. Ricardo Wurmus
2023-06-02gnu: Add python-cell2cell....* gnu/packages/bioinformatics.scm (python-cell2cell): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami
2023-06-02gnu: Add coccinelle....* gnu/packages/patchutils.scm (coccinelle): New variable. Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jean-Pierre De Jesus DIAZ
2023-06-02gnu: Add ocaml-pyml....* gnu/packages/ocaml.ml (ocaml-pyml): New variable. Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jean-Pierre De Jesus DIAZ
2023-06-02gnu: Add ocaml-stdcompat....* gnu/packages/ocaml.scm (ocaml-stdcompat): New variable. Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jean-Pierre De Jesus DIAZ
2023-06-02gnu: Add ocaml-parmap....* gnu/packages/ocaml.scm (ocaml-parmap): New variable. Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jean-Pierre De Jesus DIAZ
2023-06-02gnu: Add tmux-plugin-mem-cpu-load....* gnu/packages/tmux.scm (tmux-plugin-mem-cpu-load): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2023-06-02services: Error in MODIFY-SERVICES when services don't exist...This patch causes MODIFY-SERVICES to raise an error if a reference is made to a service which isn't in its service list. This it to help users notice if they have an invalid rule, which is currently silently ignored. * gnu/services.scm (%delete-service): new procedure (%apply-clauses): new syntax rule (%modify-service): remove syntax rule Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brian Cully
2023-06-02gnu: cuirass: Update to b825967....Fixes a regression introduced with the guile-squee update in 63e5975cac15102e35032d15fcd90e43d5610fa4 (which brings non-blocking/asynchronous 'exec-query') whereby Cuirass would call 'exec-query' whereby another command was being processed. * gnu/packages/ci.scm (cuirass): Update to b825967. Ludovic Courtès
2023-06-02gnu: python-ipython-documentation: Update dependencies....* gnu/packages/python-xyz.scm (python-ipython-documentation) [native-inputs]: Add python-ipykernel. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2023-06-02gnu: python-ipython-documentation: Remove patches....* gnu/packages/python-xyz.scm (python-ipython-documentation)[source]: Remove upstreamed patches. * gnu/packages/patches/python-ipython-documentation-chars.patch, gnu/packages/patches/python-ipython-documentation-repro.patch: Delete files. * gnu/local.mk: Remove files. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2023-06-02gnu: python-docrepr: Fix tests....* gnu/packages/patches/python-docrepr-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it here. * gnu/packages/documentation.scm (python-docrepr)[source]<patches>: Use it here. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2023-06-02gnu: cpp-mustache: Update to 5.0 to fix build....* gnu/packages/cpp.scm (cpp-mustache): Update to 5.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Denis 'GNUtoo' Carikli
2023-06-02gnu: gcc-boot0: Do not use 'coreutils-boot0' on GNU/Hurd....Fixes <https://issues.guix.gnu.org/63789>. Reported by Janneke Nieuwenhuizen <janneke@gnu.org>. * gnu/packages/commencement.scm (gcc-boot0)[source]: Use '%bootstrap-coreutils&co' when on GNU/Hurd. Ludovic Courtès
2023-06-02gnu: Add pcsc-cyberjack....* gnu/packages/security-token.scm (pcsc-cyberjack): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Arvid Krein
2023-06-02gnu: kicad: Update to 7.0.5....* gnu/packages/engineering.scm (kicad): Update to 7.0.5. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Peter Polidoro
2023-06-02gnu: r-tcgabiolinks: Update to 2.28.2....* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.28.2. Ricardo Wurmus
2023-06-02gnu: r-biocthis: Update to 1.10.1....* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.1. Ricardo Wurmus
2023-06-02gnu: r-basilisk-utils: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.12.1. Ricardo Wurmus
2023-06-02gnu: r-megadepth: Update to 1.10.0....* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.10.0. Ricardo Wurmus
2023-06-02gnu: r-s4arrays: Update to 1.0.4....* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.0.4. Ricardo Wurmus
2023-06-02gnu: r-biocviews: Update to 1.68.1....* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.68.1. Ricardo Wurmus
2023-06-02gnu: r-rsubread: Update to 2.14.2....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.14.2. Ricardo Wurmus
2023-06-02gnu: r-treeio: Update to 1.24.1....* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.1. Ricardo Wurmus
2023-06-02gnu: r-apeglm: Update to 1.22.1....* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.22.1. Ricardo Wurmus
2023-06-02gnu: r-zellkonverter: Update to 1.10.1....* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.10.1. Ricardo Wurmus
2023-06-02gnu: r-scmap: Update to 1.22.3....* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.3. Ricardo Wurmus
2023-06-02gnu: r-limma: Update to 3.56.1....* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.1. Ricardo Wurmus
2023-06-02gnu: r-edger: Update to 3.42.4....* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.4. Ricardo Wurmus
2023-06-02gnu: r-biostrings: Update to 2.68.1....* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.68.1. Ricardo Wurmus
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