aboutsummaryrefslogtreecommitdiff
path: root/gnu
AgeCommit message (Collapse)Author
2024-12-03gnu: r-affy: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affy)[arguments]: Disable tests. Change-Id: Iad8b990c573e417d611c3198110d6dc42deb5e2b
2024-12-03gnu: r-seqarray: Add test inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-seqarray)[native-inputs]: Add r-digest, r-matrix, and r-variantannotation. Change-Id: Iea288da4b74c575c28187353d8235700c5595c46
2024-12-03gnu: r-tarchetypes: Disable tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-tarchetypes)[arguments]: Only build vignettes. [native-inputs]: Add r-rmarkdown. Change-Id: If5bf4054be61275995b54a60ac8b63182cd36aca
2024-12-03gnu: r-ancombc: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ancombc)[native-inputs]: Add r-microbiome. Change-Id: I3ef087c262f71fbc5703aa798adc285c0db687af
2024-12-03gnu: r-phyloseq: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-phyloseq)[native-inputs]: Add r-genefilter. Change-Id: Iadc35d4721a69f37ba1370cc57e9320137c77738
2024-12-03gnu: r-bigpint: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bigpint)[arguments]: Disable tests. [native-inputs]: Add r-runit. Change-Id: I755558ce65d00451586e35b2111bfd3de3890674
2024-12-03gnu: Add r-rtcga-rnaseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rtcga-rnaseq): New variable. Change-Id: I6e9287fe55da3f6db678603f115d790d273dacc2
2024-12-03gnu: r-rtcga: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rtcga)[arguments]: Disable tests. Change-Id: If33bac14355a89a1a75860d3f28216a0614a64b1
2024-12-03gnu: r-biovizbase: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biovizbase)[native-inputs]: Add r-ensdb-hsapiens-v75. Change-Id: I47b3e912af8af52f2168a111032662674327f86b
2024-12-03gnu: r-mediation: Skip vignettes.Ricardo Wurmus
* gnu/packages/cran.scm (r-mediation)[arguments]: Disable vignettes. Change-Id: I7172f3822a57069ce14c1e3589056300d6497ce2
2024-12-03gnu: r-rms: Skip tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-rms)[arguments]: Disable tests. [native-inputs]: Add r-vgam. Change-Id: Ia475863fc21cd4c8fdbcfc4f4a58eda3c086c99b
2024-12-03gnu: r-rliger: Add test inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-rliger)[arguments]: Add phase 'delete-bad-tests. [native-inputs]: Add r-testthat. Change-Id: I65efd90de0478532f5b322ce71c04bdc7461a84d
2024-12-03gnu: r-rliger: Add manifest file to JAR.Ricardo Wurmus
* gnu/packages/cran.scm (r-rliger)[arguments]: Generate MANIFEST.MF and include it. Change-Id: I676ff34d8f519a05995bd061ad77c7c6e1d90b39
2024-12-03gnu: r-pastecs: Add test input.Ricardo Wurmus
* gnu/packages/cran.scm (r-pastecs)[native-inputs]: Add r-svunit. Change-Id: I8848a0c80b35e1fe8a37d9cc0f5aa33a09e21c99
2024-12-03gnu: Add r-svunit.Ricardo Wurmus
* gnu/packages/cran.scm (r-svunit): New variable. Change-Id: I682f9068d242887d807086968f79f4b3828fba85
2024-12-03gnu: r-triform: Add test input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-triform)[native-inputs]: Add r-runit. [arguments]: Skip building vignettes. Change-Id: If9d7cddb5c24d9f82a653df7ca664b4d75059742
2024-12-03gnu: r-gdsfmt: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gdsfmt)[native-inputs]: Add r-biocgenerics, r-digest, and r-matrix. Change-Id: Ia0f08199a49f4b9c3b5ecf751fa8ec211140b12f
2024-12-03gnu: r-aroma-light: Add test input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aroma-light)[native-inputs]: Add r-princurve. Change-Id: I073ba49e5b564d1b6202a25e119b3d67f103c757
2024-12-03gnu: r-matrixtests: Add test inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-matrixtests)[native-inputs]: Add r-car, r-cosinor, r-cosinor2, r-moments, r-nortest, and r-pmcmrplus. Change-Id: I76a31fc34fa8cdaadfb56939f5d1a4de63c43262
2024-12-03gnu: Add r-cosinor2.Ricardo Wurmus
* gnu/packages/cran.scm (r-cosinor2): New variable. Change-Id: I4434c614c7e5fdcb33f97d9cb6100bd1bb962172
2024-12-03gnu: Add r-cosinor.Ricardo Wurmus
* gnu/packages/cran.scm (r-cosinor): New variable. Change-Id: Iaecb697c68c51bfb0e1c9b184dee8bfb50c9ac33
2024-12-03gnu: r-anndatar: Add test inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-anndatar)[native-inputs]: Add r-rhdf5, r-seuratobject, r-singlecellexperiment, and r-testthat. Change-Id: I233a1f7216241b5d9d8301e07acdf811edb24a28
2024-12-03gnu: r-pander: Add missing inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-pander)[native-inputs]: Add pandoc, r-lattice, and r-testthat. [arguments]: Add phase 'delete-bad-tests. Change-Id: Ib1c27b0883a153bc92334f2ad3928380f470d95a
2024-12-03gnu: r-acde: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-acde)[arguments]: Disable tests. [native-inputs]: Add r-biocgenerics. Change-Id: I801951e942c80843bbdd6bc2eb63a31ddaf365a2
2024-12-03gnu: r-chemmineob: Skip tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chemmineob)[arguments]: Only build vignettes. Change-Id: I8dae82ac4226c33a18009131b7e17662af84589b
2024-12-03gnu: r-chemminer: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chemminer)[native-inputs]: Add r-chemmineob, r-rsqlite, r-runit, and r-snow. Change-Id: I625ae09918c3bdf9b7248e61c6d4959f67175f45
2024-12-03gnu: r-rcppml/devel: Add missing input.Ricardo Wurmus
* gnu/packages/machine-learning.scm (r-rcppml/devel)[native-inputs]: Add r-testthat. Change-Id: I6a5c29c82d2417d53684dbb278ce4b1703988ffa
2024-12-03gnu: r-rsvg: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsvg)[native-inputs]: Add r-spelling. Change-Id: Ie31fbf1a745acca112bda7e8432c02c3e9141c9f
2024-12-03gnu: r-codedepends: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-codedepends)[native-inputs]: Add r-rgraphviz. Change-Id: I1d122d4ac01b003ea6de5fb1df99399839fcea4d
2024-12-03gnu: r-rgdal: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgdal)[native-inputs]: Add r-sf. Change-Id: I5ec21fbab319aa71b32a3adc2fd6484bc0a3becf
2024-12-03gnu: r-spacetime: Do not build vignettes.Ricardo Wurmus
* gnu/packages/cran.scm (r-spacetime)[arguments]: Skip vignettes. Change-Id: I6ea95012e88ef868b516524dea32d6b1c2248a46
2024-12-03gnu: r-rgeos: Add missing inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgeos)[native-inputs]: Add r-testthat and r-xml. Change-Id: I34ad60f5f342aadd8494ba436e31c3fbf1a873b5
2024-12-03gnu: r-geneoverlap: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-geneoverlap)[native-inputs]: Add r-biocgenerics and r-biocstyle. Change-Id: I538015455338a1ae8991e3b3a63bc2a951ad1d36
2024-12-03gnu: r-rgraphviz: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rgraphviz)[native-inputs]: Add r-xml. [arguments]: Remove trailing #T. Change-Id: I08df02db7f4a9d224cee5516c5bb15c836e79f7b
2024-12-03gnu: r-spatstat-core: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-core)[native-inputs]: Add r-spatstat-model. Change-Id: If8129db5645af1a6c97bb0505e2220198b573579
2024-12-03gnu: r-genetclassifier: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genetclassifier)[native-inputs]: Add r-leukemiaseset. Change-Id: Ic2d2915acb5964b83212a6124b6e596b4f13c006
2024-12-03gnu: Add r-leukemiaseset.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-leukemiaseset): New variable. Change-Id: Ida95165c48e074dbf841ec2c43ad3fb7da025fa3
2024-12-03gnu: r-rcppde: Add test input.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppde)[native-inputs]: Add r-lattice. Change-Id: Ibc945e3de2e055ed57e5451d9de5f08fe04679b3
2024-12-03gnu: r-aims: Add test inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aims)[native-inputs]: Add r-breastcancervdx and r-hgu133a-db. Change-Id: I980638a323893d1c4d00cfa2b23b3f5367aad9a5
2024-12-03gnu: Add r-hgu133a-db.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hgu133a-db): New variable. Change-Id: I200ec7534c32e701ecc3117e04c5a10ea9a9ebf8
2024-12-03gnu: r-diversitree: Disable tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-diversitree)[arguments]: Only build vignettes. [native-inputs]: Add r-caper, r-expm, r-lubridate, r-minqa, and r-testthat. Change-Id: I39a584112cddbfee2b4429c4d3a070f5d6c3a2cc
2024-12-03gnu: Remove r-xmisc.Ricardo Wurmus
This package has been broken for a while and has been archived on CRAN due to build errors and inactivity. * gnu/packages/cran.scm (r-xmisc): Remove variable. Change-Id: I0e558c13ba6c6694a1d9163c1a42bb4108c3dd33
2024-12-03gnu: r-performanceanalytics: Add test inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-performanceanalytics)[native-inputs]: Add r-hmisc and r-r-rsp. [arguments]: Add phase 'set-HOME. Change-Id: Ie8924d4d15fc45071144ae97e6bded22cefdc209
2024-12-03gnu: r-h5: Add test inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-h5)[native-inputs]: Add r-knitr and r-testthat. Change-Id: I04ebf7186f1646d537cda9fe0a971db2b2ffbc5b
2024-12-03gnu: r-hmisc: Disable tests.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hmisc)[arguments]: Only build vignettes. [native-inputs]: Add r-mvtnorm. Change-Id: I1ae7536e6256ddb145a8b2de05e2140dfe0054ea
2024-12-03gnu: r-pbdmpi: Disable tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-pbdmpi)[arguments]: Only build vignettes. Change-Id: I7aa190e24fd4172605c773c0508654c42ff0e1fc
2024-12-03gnu: r-grimport: Add test input.Ricardo Wurmus
* gnu/packages/cran.scm (r-grimport)[native-inputs]: Add r-lattice. [arguments]: Skip building vignettes. Change-Id: If79ccf922de1e4d87c6853bb3dc5db4a82fa2b9a
2024-12-03gnu: r-maxstat: Add test input.Ricardo Wurmus
* gnu/packages/cran.scm (r-maxstat)[native-inputs]: Add r-survival. Change-Id: Id9d3b2e61545917973b6744e7687f179df278455
2024-12-03gnu: r-grimport2: Add test input.Ricardo Wurmus
* gnu/packages/cran.scm (r-grimport2)[native-inputs]: Add r-gridsvg. Change-Id: I4fa1d4455b60b221a68a9fb70e905ddd753202a4
2024-12-03gnu: r-gridsvg: Add test inputs.Ricardo Wurmus
* gnu/packages/cran.scm (r-gridsvg)[native-inputs]: Add r-lattice. Change-Id: Icbe34211c7bd9c290d14281fc6e3a130d754d287
generated by cgit