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2020-12-10gnu: singularity: Update command substitutions.Efraim Flashner
Reported by Hao Chen <hchen@uthsc.edu>. * gnu/packages/linux.scm (singularity)[arguments]: Update 'patch-references phase to actually patch mksquashfs calls and to patch sed calls.
2020-12-10gnu: guile-prometheus: Update to 0-4.f661edf.Christopher Baines
* gnu/packages/guile-xyz.scm (guile-prometheus): Update to 0-4.f661edf.
2020-12-10gnu: emacs-lsp-ivy: Update to 0.4.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-lsp-ivy): Update to 0.4. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-10gnu: emacs-company-emoji: Update to 2.6.0.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-company-emoji): Update to 2.6.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-10gnu: Add emacs-org-pretty-table.Morgan Smith
* gnu/packages/emacs-xyz.scm (emacs-org-pretty-table): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-10gnu: emacs-dash-docs: Update to 1.4.0-2.dafc8fc.Michael Rohleder
* gnu/packages/emacs-xyz.scm (emacs-dash-docs): Update to 1.4.0-2.dafc8fc. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-10gnu: emacs-chess: Update to 2.0.5.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-chess): Update to 2.0.5.
2020-12-09gnu: Remove python-llfuse-0.41.Leo Famulari
* gnu/packages/python-xyz.scm (python-llfuse-0.41): Remove variable.
2020-12-09gnu: Remove Attic.Leo Famulari
This package was superseded by Borg in 2016, and hasn't built successfully for a while. * gnu/packages/backup.scm (attic): Remove variable.
2020-12-09gnu: r-keggrest: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.30.1.
2020-12-09gnu: r-genomeinfodb: Update to 1.26.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.26.2.
2020-12-09gnu: r-biocstyle: Update to 2.18.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.18.1.
2020-12-09gnu: r-scuttle: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.3. [propagated-inputs]: Add r-genomicranges.
2020-12-09gnu: r-beachmat: Update to 2.6.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.2.
2020-12-09gnu: r-cicero: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.1.
2020-12-09gnu: r-biosigner: Update to 1.18.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.2.
2020-12-09gnu: r-biocneighbors: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.2. [propagated-inputs]: Remove r-rcppannoy.
2020-12-09gnu: r-lubridate: Update to 1.7.9.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.9.2.
2020-12-09gnu: r-lme4: Update to 1.1-26.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-26.
2020-12-09gnu: r-fpc: Update to 2.2-9.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-9.
2020-12-09gnu: r-mclust: Update to 5.4.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.7.
2020-12-09gnu: r-gplots: Update to 3.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gplots): Update to 3.1.1.
2020-12-09gnu: r-hmisc: Update to 4.4-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-2.
2020-12-09gnu: r-rprojroot: Update to 2.0.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rprojroot): Update to 2.0.2. [propagated-inputs]: Remove r-backports. [native-inputs]: Add r-knitr.
2020-12-09gnu: r-rcpparmadillo: Update to 0.10.1.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.1.2.0.
2020-12-09gnu: r-rstudioapi: Update to 0.13.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.13. [native-inputs]: Add r-knitr.
2020-12-09gnu: r-backports: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-backports): Update to 1.2.0.
2020-12-09gnu: r-data-table: Update to 1.13.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-data-table): Update to 1.13.4.
2020-12-09gnu: r-dbplyr: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.0.0. [propagated-inputs]: Add r-withr.
2020-12-09gnu: r-rlang: Update to 0.4.9.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.9.
2020-12-09gnu: r-testthat: Update to 3.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-testthat): Update to 3.0.0. [propagated-inputs]: Add r-brio, r-callr, r-desc, r-jsonlite, r-lifecycle, r-processx, r-ps, and r-waldo. [native-inputs]: Add r-knitr.
2020-12-09gnu: r-codetools: Update to 0.2-18.Ricardo Wurmus
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-18.
2020-12-09gnu: r-diversitree: Update to 0.9-15.Ricardo Wurmus
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-15.
2020-12-09gnu: r-tidymodels: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.2. [propagated-inputs]: Remove r-crayon.
2020-12-09gnu: r-tune: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-tune): Update to 0.1.2. [propagated-inputs]: Remove r-crayon and r-lifecycle; add r-generics.
2020-12-09gnu: r-cpp11: Update to 0.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-cpp11): Update to 0.2.4.
2020-12-09gnu: r-spatstat-data: Update to 1.5-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-data): Update to 1.5-2.
2020-12-09gnu: r-hardhat: Update to 0.1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-hardhat): Update to 0.1.5.
2020-12-09gnu: r-brms: Update to 2.14.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-brms): Update to 2.14.4. [propagated-inputs]: Add r-projpred.
2020-12-09gnu: r-isoband: Update to 0.2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-isoband): Update to 0.2.3.
2020-12-09gnu: r-loo: Update to 2.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-loo): Update to 2.4.0.
2020-12-09gnu: r-stopwords: Update to 2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-stopwords): Update to 2.1.
2020-12-09gnu: r-isocodes: Update to 2020.12.04.Ricardo Wurmus
* gnu/packages/cran.scm (r-isocodes): Update to 2020.12.04.
2020-12-09gnu: r-fda: Update to 5.1.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-fda): Update to 5.1.7. [propagated-inputs]: Add r-fds.
2020-12-09gnu: r-r-filesets: Update to 2.14.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-r-filesets): Update to 2.14.0.
2020-12-09gnu: r-abtest: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-abtest): Update to 0.2.2.
2020-12-09gnu: r-showtext: Update to 0.9-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-showtext): Update to 0.9-1.
2020-12-09gnu: r-sysfonts: Update to 0.8.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.2.
2020-12-09gnu: r-parameters: Update to 0.10.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.10.1.
2020-12-09gnu: r-patchwork: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-patchwork): Update to 1.1.0.
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