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2019-12-17gnu: Add r-bgx.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgx): New variable.
2019-12-17gnu: Add r-bgmix.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
2019-12-17gnu: Add r-rsvg.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsvg): New variable.
2019-12-17gnu: Add r-shinycssloaders.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinycssloaders): New variable.
2019-12-17gnu: Add r-lim.Ricardo Wurmus
* gnu/packages/cran.scm (r-lim): New variable.
2019-12-17gnu: Add r-diagram.Ricardo Wurmus
* gnu/packages/cran.scm (r-diagram): New variable.
2019-12-17gnu: Add r-poibin.Ricardo Wurmus
* gnu/packages/cran.scm (r-poibin): New variable.
2019-12-17gnu: Add libsbml.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (libsbml): New variable.
2019-12-17gnu: Add love-nuklear.Jethro Cao
* gnu/packages/game-development.scm (love-nuklear): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-17gnu: txr: Update to 229.Guillaume Le Vaillant
* gnu/packages/lisp.scm (txr): Update to 229. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-17gnu: gfortran: change to a hidden packageKonrad Hinsen
* gnu/packages/gcc.scm (gfortran-4.8, gfortran-4.9) (gfortran-5, gfortran-6, gfortran-7, gfortran-8) (gfortran-9): Wrap in 'hidden-package'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-17gnu: python-elasticsearch: Update to 7.1.0.Ludovic Courtès
* gnu/packages/python-web.scm (python-elasticsearch): Update to 7.1.0.
2019-12-17gnu: r-pracma: Update to 2.2.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-pracma): Update to 2.2.9.
2019-12-17gnu: r-repr: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-repr): Update to 1.0.2.
2019-12-17gnu: r-ggeffects: Update to 0.14.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.0. [propagated-inputs]: Remove r-dplyr and r-rlang.
2019-12-17gnu: r-dvmisc: Update to 1.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-dvmisc): Update to 1.1.4. [propagated-inputs]: Add r-tab; remove r-purrr.
2019-12-17gnu: r-ttr: Update to 0.23-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-ttr): Update to 0.23-6.
2019-12-17gnu: r-argparser: Update to 0.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-argparser): Update to 0.6.
2019-12-17gnu: r-ordinal: Update to 2019.12-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-ordinal): Update to 2019.12-10.
2019-12-17gnu: r-seurat: Update to 3.1.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.2.
2019-12-17gnu: r-bh: Update to 1.72.0-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bh): Update to 1.72.0-1.
2019-12-17gnu: Add r-tab.Ricardo Wurmus
* gnu/packages/cran.scm (r-tab): New variable.
2019-12-17gnu: Add r-gee.Ricardo Wurmus
* gnu/packages/cran.scm (r-gee): New variable.
2019-12-17gnu: shotwell: Clean-up inputs.Efraim Flashner
* gnu/packages/gnome.scm (shotwell)[arguments]: Add phase to skip gtk-update-icon-cache. [inputs]: Sort alphabetically. Move glib:bin ... [native-inputs]: ... to here. Remove desktop-file-utils, gtk+:bin.
2019-12-17gnu: dia: Fix version number.Efraim Flashner
This commit is actually after to 0.97.3 release. * gnu/packages/gnome.scm (dia)[version]: Use git-version. [source]: Update to new source uri. Use git-file-name.
2019-12-17gnu: dia: Don't override bootstrap phase.Efraim Flashner
* gnu/packages/gnome.scm (dia)[arguments]: Remove custom 'run-autogen phgase. Add phase before 'bootstrap to not run configure.
2019-12-17gnu: dia: Fix-up inputs.Efraim Flashner
* gnu/packages/gnome.scm (dia)[inputs]: Sort alphabetically. Move glib:bin ... [native-inputs]: ... to here. Sort alphabetically.
2019-12-17gnu: libidl: Hard-code name in source uri.Efraim Flashner
* gnu/packages/gnome.scm (libidl)[source]: Hard-code name.
2019-12-17gnu: libidl: Set upstream name.Efraim Flashner
* gnu/packages/gnome.scm (libidl)[properties]: New field.
2019-12-17gnu: brasero: Update home-page.Efraim Flashner
* gnu/packages/gnome.scm (brasero)[home-page]: Use new home-page.
2019-12-17gnu: brasero: Fix-up inputs.Efraim Flashner
* gnu/packages/gnome.scm (brasero)[inputs]: Move itstool ... [native-inputs]: ... to here.
2019-12-17gnu: brasero: Hard-code name in source uri.Efraim Flashner
* gnu/packages/gnome.scm (brasero)[source]: Hard-code name.
2019-12-17gnu: pinfo: Use a source file name.Efraim Flashner
* gnu/packages/texinfo.scm (pinfo)[source]: Add 'file-name'.
2019-12-16gnu: electron-cash: Use substitute-keyword-arguments from electrum.Vagrant Cascadian
* gnu/packages/finance (electron-cash)[arguments]: Use substitute-keyword-arguments to re-use arguments from electrum.
2019-12-16gnu: electron-cash: Update to 4.0.12.Vagrant Cascadian
* gnu/packages/finanace (electron-cash): Update to 4.0.12. [source] switch to git. [inputs] Add libsecp256k1. [arguments] Add phase patching to use libsecp256k1 from inputs.
2019-12-16gnu: libsecp256k1: Update to 20191213.Vagrant Cascadian
* gnu/packages/crypto (libsecp256k1): Update to 20191213.
2019-12-16gnu: python-gffutils: Update description.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-gffutils)[description]: Reflow paragraph and fix spelling of SQLite.
2019-12-16gnu: Add python-gffutils.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (python-gffutils): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-16gnu: Remove python2-dask.Ricardo Wurmus
This package can no longer be built with Python 2. * gnu/packages/python-xyz.scm (python2-dask): Remove variable.
2019-12-16gnu: python-dask: Update to 2.9.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-dask): Update to 2.9.0. [arguments]: Adjust phase to disable broken tests. [propagated-inputs]: Add python-fsspec and python-packaging.
2019-12-16gnu: Add python-fsspec.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-fsspec): New variable.
2019-12-16gnu: python-pyfaidx: Update to 0.5.7.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.5.7.
2019-12-16gnu: guix-data-service: Update to 0.0.1-8.a019a5e.Christopher Baines
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-8.a019a5e.
2019-12-16Revert "gnu: ccls: Configure using -isystem for header files."Brett Gilio
This reverts commit 2c82d4ad10de8e0ba462d81401385c5e7499f6e2.
2019-12-16Revert "gnu: ccls: Adjust indentation"Brett Gilio
This reverts commit 3c80b07a0b4a2f1c2702acd6896f94892c516709.
2019-12-16gnu: Add python-argh.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-argh): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-16gnu: Add python-iocapture.Mădălin Ionel Patrașcu
* gnu/packages/python-xyz.scm (python-iocapture): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-16gnu: gash: Update to 0.2.0.Jan Nieuwenhuizen
* gnu/packages/shells.scm (gash): Update to 0.2.0.
2019-12-16gnu: psmisc: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/linux.scm (psmisc)[arguments]: Pass ac_cv_func_malloc_0_nonnull=yes and ac_cv_func_realloc_0_nonnull=yes options that are required when cross-compiling.
2019-12-16gnu: iw: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/linux.scm (iw)[arguments]: Set PKG_CONFIG and CC variables correctly for cross-compilation.
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