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2024-04-03gnu: xorg-server: Update to 21.1.12 [security fixes]....Fixes CVE-2024-31080, CVE-2024-31081, CVE-2024-31081, and CVE-2024-31083. See the X.Org Security Advisory, <https://lists.x.org/archives/xorg/2024-April/061615.html>, for details. * gnu/packages/xorg.scm (xorg-server): Update to 21.1.12. Change-Id: I384b91344f122f02e6261e2061bc45439cb03f7c John Kehayias
2024-04-03gnu: xorg-server-xwayland: Update to 23.2.5 [security fixes]....Fixes CVE-2024-31080, CVE-2024-31081, and CVE-2024-31083. See the X.Org Security Advisory, <https://lists.x.org/archives/xorg/2024-April/061615.html>, for details. * gnu/packages/xorg.scm (xorg-server-xwayland): Update to 23.2.5. Change-Id: I8d6b8f65bb6d06374a1ea925b5ff2a399a3efeac John Kehayias
2024-04-03Switch order of the default substitute servers....The aim here is to improve the user experience. There's anecdotal evidence that the network performance for bordeaux is better compared to ci at least for some users, and I don't know of any issues with rate limiting or access restriction for bordeaux compared to ci. It also has IPv6 support. Additionally, bordeaux generally had more substitutes than ci, particularly for aarch64-linux and armhf-linux. This change will offer a very slight speedup for those substitutes that only bordeaux has. Bordeaux has been a default substitute server for nearly 3 years now and I think this change is overdue. I'm also hopeful that we'll be able to build on the testing regarding mirrors for bordeaux, and that'll allow potentially improving the hosting setup (through providing more redundancy) and further improving substitute fetching for users who currently have issues with substitute access. * config-daemon.ac: Switch substitute urls order. * doc/guix.texi: Ditto. * etc/guix-install.sh: Ditto. * gnu/installer/newt/network.scm (wait-service-online): Ditto. * guix/store.scm (%default-substitute-urls): Ditto. Change-Id: I4f6d93ae1fc8b03d80b47b18b5749a51f1fde17b Signed-off-by: Christopher Baines <mail@cbaines.net> Christopher Baines
2024-04-03gnu: sonata: Add gvfs as an input....I'm getting the following error and this change resolves it: /gnu/store/rw6n86c008xqdbjs3nk4i7ggf6srdpgs-python-wrapper-3.10.7/bin/python: symbol lookup error: /run/current-system/profile/lib/gio/modules/libgvfsdbus.so: undefined symbol: g_task_set_static_name Change-Id: I6f74a5a867ba7c3b3d7b233916af0e75d9e5501f Signed-off-by: Christopher Baines <mail@cbaines.net> Christopher Baines
2024-04-03gnu: emacs-magit: Fix generation of autoloads....* gnu/packages/emacs-xyz.scm (emacs-magit)[#:phases]: Replace ‘make-autoloads’ like the others. Fixes: Magit autoloads are missing <https://bugs.gnu.org/70121> Change-Id: Iec1d89b167211889743ed1e7e64a9f866ea4c2eb Signed-off-by: Clément Lassieur <clement@lassieur.org> Liliana Marie Prikler
2024-04-02gnu: qt-creator: Fix patch-perfparser phase....This is a follow-up to f83bdd7e00 ("gnu: qt-creator: Patch file names of demangling libraries.") * gnu/packages/qt.scm (qt-creator) [phases] <patch-perfparser>: Adjust demangler.cpp file name. Change-Id: I72c517636bf866b57daa5d56dd8db643b0669a88 Maxim Cournoyer
2024-04-02gnu: Add hotspot....* gnu/packages/linux.scm (hotspot): New variable. Change-Id: Id6a0baae459bccf78c80d17f884f3fa7344ff1ac Maxim Cournoyer
2024-04-02gnu: Add kddockwidgets-1....* gnu/packages/qt.scm (kddockwidgets-1): New variable. Change-Id: Id766646155e02d412ea87932a79aae95a943ff9b Maxim Cournoyer
2024-04-02gnu: Add kddockwidgets....* gnu/packages/qt.scm (kddockwidgets): New variable. Change-Id: I0598b16da4f027f9c42584f30a49fcbba2f5a78e Maxim Cournoyer
2024-04-02gnu: qt-creator: Patch file names of demangling libraries....* gnu/packages/qt.scm (qt-creator) [phases] {patch-perfparser}: New phase. Change-Id: I65f84158af05ae866680b21e2e9b8e24a2b71bc2 Maxim Cournoyer
2024-04-02gnu: cqfd: Update to 5.5.0....* gnu/packages/docker.scm (cqfd): Update to 5.5.0. Change-Id: Ib8ba9ee06744869efc1489beb4e2d56fe0cc06e0 Maxim Cournoyer
2024-04-02gnu: gpaste: Update to 44.1....* gnu/packages/gnome-xyz.scm (gpaste): Update to 44.1. [native-inputs]: Replace GCR-3 with GCR. [inputs]: Replace GTK with GTK+. Add DESKTOP-FILE-UTILS. Remove LIBARCHIVE. Signed-off-by: Leo Famulari <leo@famulari.name> Change-Id: I9e9548a9e3393dfa4b9e7b64978418106fb25db1 Attila Lendvai
2024-04-02gnu: clojure-tools: Update to 1.11.1.1413....* gnu/packages/clojure.scm (clojure-tools): Update to 1.11.1.1413. [inputs]: Add clojure-tools-deps. Remove clojure-tools-deps-alpha. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Change-Id: I52fda6af441d1cd2ba271153f87eb0c35bce31cb Eugen Stan
2024-04-02gnu: Add clojure-tools-deps....* gnu/packages/crates-io.scm (clojure-tools-deps): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Change-Id: Ic02349bfe5b899874ff8e6067e790ca9d9f1f96e Eugen Stan
2024-04-02gnu: icewm: Update to 3.4.7....* gnu/packages/wm.scm (icewm): Update to 3.4.7. Change-Id: I6daa66be92a01ae587efec2bf3f0ac4769ae797a Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Andy Tai
2024-04-02gnu: clifm: Update to 1.18....* gnu/packages/clifm.scm (clifm): Update to 1.18. Change-Id: Ic0c2a307dbbcca06cfffe60248234849dca2f726 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Rodion Goritskov
2024-04-02gnu: gtk: Fix tests on aarch64....* gnu/packages/gtk.scm (gtk)[arguments]<#:configure-flags>: Skip more failing tests known to fail. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Change-Id: I34d0f7521224b41072fcc0c35321935d1db927e0 Leo Nikkilä
2024-04-02Revert "gnu: gtk: Skip failing tests on aarch64-linux."...This reverts commit 76ed1e886ea790fc8562b355a0768a0f04889abb. The next commit does a better job of skipping the tests. Efraim Flashner
2024-04-02gnu: parallel: Update to 20240322....* gnu/packages/parallel.scm (parallel): Update to 20240322. Change-Id: I7207d4847cd407de637334688242132e8c557490 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Andy Tai
2024-04-02gnu: pinentry-rofi: Update to 2.1.0....* gnu/packages/gnupg.scm (pinentry-rofi): Update to 2.1.0. Change-Id: Ie39dfadc9905032e2a6cd08858596b7fdfd5c6dd Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Fredrik Salomonsson
2024-04-02gnu: debootstrap: Use pureos-archive-keyring....* gnu/packages/debian.scm (debootstrap): [arguments]: In 'patch-source' phase, use pureos-archive-keyring. [inputs]: Add pureos-archive-keyring. Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org> Change-Id: I8bf0a7db50c66dcf3541e5c7244350ff9523d921 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Denis 'GNUtoo' Carikli
2024-04-02gnu: Add pureos-archive-keyring....* gnu/packages/debian.scm (pureos-archive-keyring): New variable. Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org> Change-Id: I80af4b15c7fe20dd40358d4f676a89903060bf07 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Denis 'GNUtoo' Carikli
2024-04-02gnu: greetd: Fix cross-compilation....* gnu/packages/admin.scm (greetd): Fix cross-compilation. [native-inputs]: Move linux-pam from here ... [inputs]: ... to here. [arguments]<#:phases>: Set release directory based on target. Change-Id: I822f8f215677bc951b21e46dddf44954a43df58f Signed-off-by: Efraim Flashner <efraim@flashner.co.il> dan
2024-04-02gnu: ngtcp2: Update to 1.4.0....* gnu/packages/networking.scm (ngtcp2): Update to 1.4.0. Change-Id: I87a91913dd12affe18d240235c39a5639c798801 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Tomas Volf
2024-04-02gnu: ccid: Fix cross-compilation....* gnu/packages/security-token.scm (ccid): Fix cross-compilation. Change-Id: I15c96a57e155742f5a2a8394402ae0fb0563f663 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> dan
2024-04-02gnu: libjxl: Fix build on riscv64-linux....* gnu/packages/image.scm (libjxl) [arguments]: Add fix-atomic phase when target riscv64-linux. Change-Id: I442c668c3d52c241f0d405f51ea8d995bfefd3fd Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Zheng Junjie
2024-04-02gnu: ruby-stackprof: Remove store file name....This is a follow-up to commit d7e092719a4e0e168df56c03076a87c0e32692e5|head gnu: ruby-stackprof: Skip test known to fail. * gnu/packages/ruby.scm (ruby-stackprof): Remove literal store file name from comment. This fixes `make dist'. Change-Id: Ifc71c9f664790a27a0ed7f3dacd2189dbc1f6ba6 Janneke Nieuwenhuizen
2024-04-02gnu: r-tcgabiolinks: Update to 2.30.4....* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.30.4. Change-Id: Ib0f5a7f9855c21b378060b7a9e1af031effda624 Ricardo Wurmus
2024-04-02gnu: r-bionero: Update to 1.10.3....* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.3. Change-Id: I03b6f9259c05a6915d3e5425ab9165067c400f03 Ricardo Wurmus
2024-04-02gnu: r-catalyst: Update to 1.26.1....* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.26.1. Change-Id: I32cff6ff74a76770212ab24a08805baf00bb7adc Ricardo Wurmus
2024-04-02gnu: r-biocfilecache: Update to 2.10.2....* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.10.2. Change-Id: I23fdcff4ba85610aeee21504ff9313c6163d46bd Ricardo Wurmus
2024-04-02gnu: r-seqarray: Update to 1.42.3....* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.3. Change-Id: I8fedfd9709519ad2b1533840747402a56a4af2b5 Ricardo Wurmus
2024-04-02gnu: r-lme4: Update to 1.1-35.2....* gnu/packages/statistics.scm (r-lme4): Update to 1.1-35.2. Change-Id: Iadd5c9d4a3903360e4e61920da3b2c5b83be882f Ricardo Wurmus
2024-04-02gnu: r-rsqlite: Update to 2.3.6....* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.6. Change-Id: Ib0404ffaceb949d7665aa22fc40c49c95cf3dd2c Ricardo Wurmus
2024-04-02gnu: r-data-table: Update to 1.15.4....* gnu/packages/statistics.scm (r-data-table): Update to 1.15.4. Change-Id: Ia36df7314f9b85b5bac32f2c6dc661460f8aa5ec Ricardo Wurmus
2024-04-02gnu: r-munsell: Update to 0.5.1....* gnu/packages/statistics.scm (r-munsell): Update to 0.5.1. Change-Id: I526337679f81d865f81b8b603305bf5f7b611539 Ricardo Wurmus
2024-04-02gnu: r-codetools: Update to 0.2-20....* gnu/packages/statistics.scm (r-codetools): Update to 0.2-20. Change-Id: I81f61bfa1a5db3f0c6e9738735cc47536e5968ae Ricardo Wurmus
2024-04-02gnu: r-textshape: Update to 1.7.5....* gnu/packages/cran.scm (r-textshape): Update to 1.7.5. Change-Id: I070fd0e29ae4498515696ba11968684618783e62 Ricardo Wurmus
2024-04-02gnu: r-metafor: Update to 4.6-0....* gnu/packages/cran.scm (r-metafor): Update to 4.6-0. Change-Id: Idac90e66df71c8d316885966012a731d72310722 Ricardo Wurmus
2024-04-02gnu: r-iml: Update to 0.11.2....* gnu/packages/cran.scm (r-iml): Update to 0.11.2. [propagated-inputs]: Remove r-prediction. Change-Id: I9641fb9ab9e8093c9e1ece679b26799d833c158b Ricardo Wurmus
2024-04-02gnu: r-eulerr: Update to 7.0.2....* gnu/packages/cran.scm (r-eulerr): Update to 7.0.2. Change-Id: I2cba2668de9efbbe279dd7ee89d36aab6631d7ec Ricardo Wurmus
2024-04-02gnu: r-future-apply: Update to 1.11.2....* gnu/packages/cran.scm (r-future-apply): Update to 1.11.2. Change-Id: Ie1cb584486734ee62c726393cedd17ad7fb5639d Ricardo Wurmus
2024-04-02gnu: r-epi: Update to 2.48....* gnu/packages/cran.scm (r-epi): Update to 2.48. Change-Id: Ibc1817d26895962740177c02b95cf089658443e6 Ricardo Wurmus
2024-04-02gnu: r-arm: Update to 1.14-4....* gnu/packages/cran.scm (r-arm): Update to 1.14-4. Change-Id: I5786ca735bbf67402d332a4bc7481b6ca4a7d1bc Ricardo Wurmus
2024-04-02gnu: r-gh: Update to 1.4.1....* gnu/packages/cran.scm (r-gh): Update to 1.4.1. [propagated-inputs]: Add r-glue and r-lifecycle. Change-Id: Ifb23c4ab6f128c172780bf52fda6176771cfd616 Ricardo Wurmus
2024-04-02gnu: r-effectsize: Update to 0.8.7....* gnu/packages/cran.scm (r-effectsize): Update to 0.8.7. Change-Id: I909f9de3fbaf19acf0eeaaa17f60673c5208297e Ricardo Wurmus
2024-04-02gnu: r-hardyweinberg: Update to 1.7.7....* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.7.7. [propagated-inputs]: Add r-shape. Change-Id: I6bbff3c991abe26ea3fd092a41bca455ed0bc0a3 Ricardo Wurmus
2024-04-02gnu: r-httr2: Update to 1.0.1....* gnu/packages/cran.scm (r-httr2): Update to 1.0.1. Change-Id: I4961227d5e26a3cbf9999b395bb9c3fce6321861 Ricardo Wurmus
2024-04-02gnu: r-collapse: Update to 2.0.12....* gnu/packages/cran.scm (r-collapse): Update to 2.0.12. Change-Id: Id30326eaddfb6d546524db366160ce39905527c8 Ricardo Wurmus
2024-04-02gnu: r-microbiomestat: Update to 1.2....* gnu/packages/bioconductor.scm (r-microbiomestat): Update to 1.2. [propagated-inputs]: Remove r-phyloseq. Change-Id: I3a0133e9318f86d162ca562708fbf5fe6703407d Ricardo Wurmus