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2022-09-20gnu: emacs-boxquote: Update to 2.3.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-boxquote): Update to 2.3.
2022-09-20gnu: emacs-osm: Update to 0.8.Morgan Smith
* gnu/packages/emacs-xyz.scm (emacs-osm): Update to 0.8. [arguments]<#:phases>: Add MAKEINFO phase. [native-inputs]: Add TEXINFO. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-09-20gnu: Add emacs-pdfgrep.pinoaffe
* gnu/packages/emacs-xyz.scm (emacs-pdfgrep): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-09-20gnu: emacs-setup: Update to 1.3.2.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-setup): Update to 1.3.2.
2022-09-20gnu: emacs-taxy: Update to 0.10.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-taxy): Update to 0.10.1.
2022-09-20linux-container: 'container-excursion*' marks its FDs as FD_CLOEXEC.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/57827>. Reported by Mathieu Othacehe <othacehe@gnu.org>. Fixes a regression introduced with the Shepherd 0.9.2 upgrade in 1ba0e38267c9ff8bb476285091be6e297bbf136e, whereby IN and OUT would no longer be closed when 'fork+exec-command/container' would call 'exec-command*' as part of the THUNK passed to 'container-excursion*'. This is because the Shepherd 0.9.2 assumes file descriptors are properly marked as O_CLOEXEC and, consequently, 'exec-command' no longer run the close(2) loop prior to 'exec'. * gnu/build/linux-container.scm (container-excursion*): Add calls to 'fcntl'.
2022-09-20gnu: python-pyvcf: Update to 0.6.8-0.476169c.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pyvcf): Update to 0.6.8-0.476169c.
2022-09-20gnu: python-pyvcf: Use older setuptools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pyvcf)[native-inputs]: Replace python-setuptools with python-setuptools-for-tensorflow.
2022-09-20gnu: r-mlr3ordinal: Update to 0.1.0-9000-1.736e3a3.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3ordinal): Update to 0.1.0-9000-1.736e3a3.
2022-09-20gnu: r-desctools: Update to 0.99.46.Ricardo Wurmus
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.46.
2022-09-20gnu: r-clubsandwich: Update to 0.5.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.8.
2022-09-20gnu: r-forcats: Update to 0.5.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-forcats): Update to 0.5.2. [propagated-inputs]: Add r-cli, r-glue, r-lifecycle, and r-withr.
2022-09-20gnu: r-sn: Update to 2.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sn): Update to 2.1.0.
2022-09-20gnu: r-matrixmodels: Update to 0.5-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-1.
2022-09-20gnu: r-rrcov: Update to 1.7-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-1.
2022-09-20gnu: r-statmod: Update to 1.4.37.Ricardo Wurmus
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.37.
2022-09-20gnu: r-hmisc: Update to 4.7-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hmisc): Update to 4.7-1.
2022-09-20gnu: r-base64: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-base64): Update to 2.0.1.
2022-09-20gnu: r-tidyr: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyr): Update to 1.2.1.
2022-09-20gnu: r-viridislite: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.1.
2022-09-20gnu: r-rsqlite: Update to 2.2.17.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.17.
2022-09-20gnu: r-gtable: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.1. [native-inputs]: Add r-knitr.
2022-09-20gnu: r-rmarkdown: Update to 2.16.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.16.
2022-09-20gnu: r-rcpparmadillo: Update to 0.11.2.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.2.4.0.
2022-09-20gnu: r-hms: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hms): Update to 1.1.2.
2022-09-20gnu: r-rstudioapi: Update to 0.14.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.14.
2022-09-20gnu: r-httr: Update to 1.4.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-httr): Update to 1.4.4.
2022-09-20gnu: r-openssl: Update to 2.0.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 2.0.3.
2022-09-20gnu: r-desc: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-desc): Update to 1.4.2.
2022-09-20gnu: r-rversions: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rversions): Update to 2.1.2.
2022-09-20gnu: r-dplyr: Update to 1.0.10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.10.
2022-09-20gnu: r-rlang: Update to 1.0.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlang): Update to 1.0.5.
2022-09-20gnu: r-knitr: Update to 1.40.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitr): Update to 1.40.
2022-09-20gnu: r-evaluate: Update to 0.16.Ricardo Wurmus
* gnu/packages/statistics.scm (r-evaluate): Update to 0.16.
2022-09-20gnu: r-stringr: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-stringr): Update to 1.4.1.
2022-09-20gnu: r-survival: Update to 3.4-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-survival): Update to 3.4-0.
2022-09-20gnu: r-nlme: Update to 3.1-159.Ricardo Wurmus
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-159.
2022-09-20gnu: r-matrix: Update to 1.5-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.5-1.
2022-09-20gnu: r-cluster: Update to 2.1.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.4.
2022-09-20gnu: r-ggh4x: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggh4x): Update to 0.2.2. [propagated-inputs]: Add r-cli and r-lifecycle.
2022-09-20gnu: r-wordspace: Update to 0.2-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-wordspace): Update to 0.2-8.
2022-09-20gnu: r-webmockr: Update to 0.8.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-webmockr): Update to 0.8.2.
2022-09-20gnu: r-crul: Update to 1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-crul): Update to 1.3.
2022-09-20gnu: r-zoolog: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-zoolog): Update to 1.1.0.
2022-09-20gnu: r-paws-compute: Update to 0.1.13.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-compute): Update to 0.1.13.
2022-09-20gnu: r-paws-common: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-common): Update to 0.5.0. [propagated-inputs]: Add r-rcpp.
2022-09-20gnu: r-tfruns: Update to 1.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-tfruns): Update to 1.5.1.
2022-09-20gnu: r-qs: Update to 0.25.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-qs): Update to 0.25.4.
2022-09-20gnu: r-rapiserialize: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rapiserialize): Update to 0.1.2.
2022-09-20gnu: r-exactextractr: Update to 0.9.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-exactextractr): Update to 0.9.0.
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