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2017-07-09gnu: lilypond: Use texlive-union.Ricardo Wurmus
* gnu/packages/music.scm (lilypond)[arguments]: Add phase "use-texlive-union". [native-inputs]: Replace "texlive" with a texlive-union.
2017-07-09gnu: lilypond: Update to 2.19.63.Ricardo Wurmus
* gnu/packages/music.scm (lilypond): Update to 2.19.63.
2017-07-09gnu: Add texlive-metapost.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-metapost): New variable.
2017-07-09gnu: Add texlive-latex-lh.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-lh): New variable.
2017-07-09gnu: Add texlive-latex-eepic.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-eepic): New variable.
2017-07-09gnu: Add texlive-latex-eso-pic.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-eso-pic): New variable.
2017-07-09gnu: Add texlive-fonts-ec.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-fonts-ec): New variable.
2017-07-09gnu: Add texlive-generic-epsf.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-generic-epsf): New variable.
2017-07-09gnu: Add texlive-latex-wasysym.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-wasysym): New variable.
2017-07-09gnu: Add texlive-latex-titlesec.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-titlesec): New variable.
2017-07-09gnu: Add texlive-latex-subfigure.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-subfigure): New variable.
2017-07-09gnu: Add texlive-fonts-stmaryrd.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-fonts-stmaryrd): New variable.
2017-07-09gnu: Add texlive-latex-pdfpages.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-pdfpages): New variable.
2017-07-09gnu: Add texlive-latex-overpic.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-overpic): New variable.
2017-07-09gnu: Add texlive-latex-multirow.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-multirow): New variable.
2017-07-09gnu: Add texlive-latex-jknapltx.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-jknapltx): New variable.
2017-07-09gnu: Add texlive-latex-listings.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-listings): New variable.
2017-07-09gnu: Add texlive-latex-footmisc.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-footmisc): New variable.
2017-07-09gnu: Add texlive-latex-float.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-float): New variable.
2017-07-09gnu: Add texlive-latex-fancyvrb.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-fancyvrb): New variable.
2017-07-09gnu: Add texlive-latex-fancyhdr.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-fancyhdr): New variable.
2017-07-09gnu: Add texlive-latex-fancybox.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-fancybox): New variable.
2017-07-09gnu: Add texlive-latex-colortbl.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-colortbl): New variable.
2017-07-09gnu: Add texlive-latex-changebar.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-changebar): New variable.
2017-07-09gnu: Add texlive-latex-appendix.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-appendix): New variable.
2017-07-09gnu: Add texlive-latex-anysize.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-anysize): New variable.
2017-07-09gnu: Add texlive-latex-amsfonts.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-amsfonts): New variable.
2017-07-09gnu: Add texlive-fonts-amsfonts.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-fonts-amsfonts): New variable.
2017-07-09gnu: texlive-generic-ifxetex: Fix description.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-generic-ifxetex)[description]: Fix typo.
2017-07-09gnu: texlive-latex-oberdiek: Build ifpdf package.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-oberdiek)[arguments]: Only build the "oberdiek.ins" package (which includes all other packages); patch file to build "ifpdf.dtx" instead of "ifpdf.ins".
2017-07-09gnu: texlive-latex-base: Fix xetex and xelatex formats.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Build xetex and xelatex formats with matching interpreters.
2017-07-09gnu: deeptools: Update to 2.5.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (deeptools): Update to 2.5.1. [arguments]: Remove. [native-inputs]: Use "python-" instead of "python2-" variants. [inputs]: Likewise; add python-py2bit.
2017-07-09gnu: Add python-py2bit.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-py2bit): New variable.
2017-07-09gnu: Add java-jgit-4.2.Ricardo Wurmus
* gnu/packages/version-control.scm (java-jgit-4.2): New variable.
2017-07-09gnu: Add java-jgit.Ricardo Wurmus
* gnu/packages/version-control.scm (java-jgit): New variable.
2017-07-09gnu: Add java-slf4j-api.Ricardo Wurmus
* gnu/packages/java.scm (java-slf4j-api): New variable.
2017-07-09gnu: Add java-javaewah.Ricardo Wurmus
* gnu/packages/java.scm (java-javaewah): New variable.
2017-07-09gnu: Add java-classpathx-servletapiRicardo Wurmus
* gnu/packages/java.scm (java-classpathx-servletapi): New variable.
2017-07-09gnu: youtube-dl: Update to 2017.07.09.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.09.
2017-07-09gnu: libjpeg-turbo: Update to 1.5.2.Marius Bakke
* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.2. [arguments]<#:phases>: Remove.
2017-07-09gnu: you-get: Update to 0.4.775.Feng Shu
* gnu/packages/video.scm (you-get): Update to 0.4.775. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-07-09gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776.Leo Famulari
This is a followup to commit 95bbaa02aa63bc5eae36f686f1ed9915663aa4cf. See <https://bugs.gnu.org/27621> for more information. Poppler 0.56.0's ABI is not compatible with Poppler 0.52.0, so it's not possible to graft the newer version in place of the older one. This change leaves CVE-2017-9775 unfixed for now. * gnu/packages/patches/poppler-CVE-2017-9776.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (poppler-0.56.0): Replace with ... (poppler/fixed): ... new variable. (poppler)[replacement]: Replaced with poppler/fixed.
2017-07-09gnu: sshuttle: Update to 0.78.3.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (sshuttle): Update to 0.78.3.
2017-07-08gnu: wxmaxima: Update to 17.05.0.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.0. [source]: Update URL and add file-name. [native-inputs]: Add autoconf, automake and gettext-minimal. [arguments]: Add 'autoconf' phase.
2017-07-08gnu: font-gnu-unifont: Update to 10.0.04.Efraim Flashner
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.04.
2017-07-08gnu: blast+: Update to 2.6.0.Ben Woodcroft
* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0. [origin]: Remove bundled pcre. Add patch. [arguments]: Replace paths in run_with_lock.c. Configure with pcre. [inputs]: Add pcre, perl, python. * gnu/packages/patches/blast+-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2017-07-07gnu: maxima: Ensure gcc is available at runtime.Kei Kebreau
* gnu/packages/maths.scm (maxima)[inputs]: Add gcc. [arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase.
2017-07-07gnu: perl-dbd-mysql: Update to 4.043.Leo Famulari
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.043.
2017-07-07gnu: python-pyopenssl: Fix test failure on 32-bit platforms.Marius Bakke
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-pyopenssl)[source]: Use it.
2017-07-07gnu: irssi: Update to 1.0.4 [fixes CVE-2017-{10965,10966}].Leo Famulari
* gnu/packages/irc.scm (irssi): Update to 1.0.4.
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