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2021-08-25gnu: Add r-ballgown.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ballgown): New variable.
2021-08-25gnu: Add ivar.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ivar): New variable.
2021-07-27gnu: atop: Update to 2.6.0.Leo Famulari
* gnu/packages/admin.scm (atop): Update to 2.6.0.
2021-08-24gnu: openssl: Update replacement to 1.1.1l [security fixes].Efraim Flashner
* gnu/packages/tls.scm (openssl)[replacement]: Replace with 1.1.1l. (openssl-1.1.1k): Remove variable. (openssl-1.1.1l): Add variable.
2021-08-24gnu: r-delayedmatrixstats: Update to 1.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.2.
2021-08-24gnu: r-sparsematrixstats: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.4.2.
2021-08-24gnu: r-scuttle: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.2.1.
2021-08-24gnu: r-beachmat: Update to 2.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.8.1.
2021-08-24gnu: r-biocset: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.6.1.
2021-08-24gnu: r-universalmotif: Update to 1.10.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.10.2.
2021-08-24gnu: r-clusterprofiler: Update to 4.0.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.4.
2021-08-24gnu: r-dose: Update to 3.18.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.2.
2021-08-24gnu: r-batchelor: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.8.1.
2021-08-24gnu: r-ggtree: Update to 3.0.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.3.
2021-08-24gnu: r-treeio: Update to 1.16.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.16.2.
2021-08-24gnu: r-matrixgenerics: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.2.
2021-08-24gnu: r-chippeakanno: Update to 3.26.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.3.
2021-08-24gnu: r-diffbind: Update to 3.2.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.5.
2021-08-24gnu: r-structuralvariantannotation: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.2. [propagated-inputs]: Add r-genomeinfodb, r-iranges, r-s4vectors, and r-summarizedexperiment.
2021-08-24gnu: r-rtracklayer: Update to 1.52.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.1.
2021-08-24gnu: r-limma: Update to 3.48.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.3.
2021-08-24gnu: r-genomicfeatures: Update to 1.44.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.1.
2021-08-24gnu: r-ensembldb: Update to 2.16.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.4.
2021-08-24gnu: r-biostrings: Update to 2.60.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.2.
2021-08-24gnu: r-biomart: Update to 2.48.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.3.
2021-08-24gnu: r-xml: Update to 3.99-0.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.7.
2021-08-24gnu: r-rsqlite: Update to 2.2.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.8.
2021-08-24gnu: r-rmarkdown: Update to 2.10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.10.
2021-08-24gnu: r-readr: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-readr): Update to 2.0.1.
2021-08-24gnu: r-r6: Update to 2.5.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r6): Update to 2.5.1.
2021-08-24gnu: r-survival: Update to 3.2-12.Ricardo Wurmus
* gnu/packages/statistics.scm (r-survival): Update to 3.2-12.
2021-08-24gnu: r-keras: Update to 2.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-keras): Update to 2.6.0. [propagated-inputs]: Add r-ellipsis and r-glue.
2021-08-24gnu: r-tensorflow: Update to 2.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tensorflow): Update to 2.6.0. [propagated-inputs]: Remove r-jsonlite; add r-tfautograph.
2021-08-24gnu: r-opencpu: Update to 2.2.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.5.
2021-08-24gnu: r-vroom: Update to 1.5.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-vroom): Update to 1.5.4.
2021-08-24gnu: r-textplot: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-textplot): Update to 0.2.0.
2021-08-24gnu: r-rjsonio: Update to 1.3-1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-rjsonio): Update to 1.3-1.5.
2021-08-24gnu: r-english: Update to 1.2-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-english): Update to 1.2-6.
2021-08-24gnu: r-mlr3learners: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.0. [propagated-inputs]: Add r-checkmate.
2021-08-24gnu: r-mlr3: Update to 0.12.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3): Update to 0.12.0. [propagated-inputs]: Remove r-digest; add r-future.
2021-08-24gnu: r-seurat: Update to 4.0.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat): Update to 4.0.4.
2021-08-24gnu: r-infer: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-infer): Update to 1.0.0. [propagated-inputs]: Add r-broom, r-generics, r-patchwork, and r-tidyr.
2021-08-24gnu: r-scatterpie: Update to 0.1.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.7. [propagated-inputs]: Remove r-rvcheck; add r-ggfun.
2021-08-24gnu: r-brms: Update to 2.16.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-brms): Update to 2.16.0. [propagated-inputs]: Add r-posterior.
2021-08-24gnu: r-rxnat: Update to 1.0.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-rxnat): Update to 1.0.15. [propagated-inputs]: Remove r-dplyr.
2021-08-24gnu: r-rlinsolve: Update to 0.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rlinsolve): Update to 0.3.2.
2021-08-24gnu: r-rsconnect: Update to 0.8.24.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsconnect): Update to 0.8.24.
2021-08-24gnu: r-packrat: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-packrat): Update to 0.7.0.
2021-08-24gnu: r-rpf: Update to 1.0.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-rpf): Update to 1.0.8.
2021-08-24gnu: r-quanteda: Update to 3.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-quanteda): Update to 3.1.0.
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