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* gnu/packages/bioconductor.scm (r-a4base): Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-a4core): Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.0.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.1.
[propagated-inputs]: Remove r-annotationdbi, r-europepmc, r-ggplotify,
r-ggridges, and r-gridextra; add r-magrittr and r-shadowtext.
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* gnu/packages/cran.scm (r-shadowtext): New variable.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.16.0.
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* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-anota): Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.16.1.
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* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.32.0.
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* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.58.0.
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* gnu/packages/bioconductor.scm (r-scone): Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-monocle): Update to 2.18.0.
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* gnu/packages/bioconductor.scm (r-mast): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-ihw): Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-savr): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-destiny): Update to 3.4.0.
[propagated-inputs]: Remove r-nbconvertr.
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* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-inspect): Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-plgem): Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-rots): Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-glimma): Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-goseq): Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-ctc): Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.52.0.
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