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2020-04-29tests: install: Fix gui-installed-os test....This is a follow-up of a860eddbbddeae5d3b6fe084e29ac9fafd2d6f02. If using an ISO, the main disk is vda and not vdb anymore. * gnu/tests/install.scm (installation-target-os-for-gui-tests): Use vda2 as swap partition. Mathieu Othacehe
2020-04-29tests: install: Increase virtual machine RAM....It seems that 'guix system init' is consuming more than the 800M of RAM currently allocated. Until this is understood, bump the limit to 1.2G. Reported here: https://lists.gnu.org/archive/html/bug-guix/2020-04/msg00519.html * gnu/tests/install.scm (run-install): Bump RAM to 1.2G. Mathieu Othacehe
2020-04-29gnu: Add xnec2c....* gnu/packages/radio.scm (xnec2c): New variable. Guillaume Le Vaillant
2020-04-28gnu: guile-json: Update to 3.5.0....* gnu/packages/guile.scm (guile-json-3): Update to 3.5.0. Ludovic Courtès
2020-04-28gnu: guix: Update to 619f918....* gnu/packages/package-management.scm (guix): Update to 619f918. Ludovic Courtès
2020-04-28gnu: openldap: Fix CVE-2020-12243....* gnu/packages/openldap.scm (openldap)[replacement]: New field. (openldap/fixed): New variable. * gnu/packages/patches/openldap-CVE-2020-12243.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2020-04-28gnu: valgrind: Update source uri....* gnu/packages/valgrind.scm (valgrind)[source]: Remove valgrind host, add sourceware host. [home-page]: Use https. Efraim Flashner
2020-04-28gnu: sbcl: Update to 2.0.4....* gnu/packages/lisp.scm (sbcl): Update to 2.0.4. Pierre Neidhardt
2020-04-28gnu: sbcl-parenscript: Update to 2.7.1....* gnu/packages/lisp-xyz.scm (sbcl-parenscript): Update to 2.7.1. Pierre Neidhardt
2020-04-28gnu: emacs-telega: Test Emacs environment on startup....Print a more helpful error message when someone attempts to run Telega on an incompatible Emacs (e.g a 32-bit Emacs without wide ints). * gnu/packages/patches/emacs-telega-test-env.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/emacs-xyz.scm (emacs-telega)[source]: Use it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Diego Nicola Barbato
2020-04-28gnu: emacs-telega: Build with emacs-wide-int on 32-bit systems....Fixes <https://bugs.gnu.org/39406>. Reported by <lmedeiros@riseup.net>. * gnu/packages/emacs-xyz.scm (emacs-telega)[native-inputs]: Replace emacs with emacs-wide-int on 32-bit systems. This is needed because Telega requires 64-bit wide ints. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Diego Nicola Barbato
2020-04-28gnu: Add emacs-wide-int....* gnu/packages/emacs.scm (emacs-wide-int): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Diego Nicola Barbato
2020-04-28gnu: Add emacs-magit-annex....* gnu/packages/emacs-xyz.scm (emacs-magit-annex): New variable. Christopher Lemmer Webber
2020-04-28gnu: lv2: Update to 1.18.0....* gnu/packages/audio.scm (lv2): Update to 1.18.0. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> Alexandros Theodotou
2020-04-28gnu: kakoune: Update to 2020.01.16....* gnu/packages/text-editors.scm (kakoune): Update to 2020.01.16. Nicolas Goaziou
2020-04-28gnu: emacs-evil-org: Update to 1.0.2....* gnu/packages/emacs-xyz.scm (emacs-evil-org): Update to 1.0.2. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> John Soo
2020-04-28gnu: emacs-sx: Update to 20191229....* gnu/packages/emacs-xyz.scm (emacs-sx): Update to 20191229. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Joseph LaFreniere
2020-04-28gnu: Add emacs-toml-mode....* gnu/packages/emacs-xyz.scm (emacs-toml-mode): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Joseph LaFreniere
2020-04-28gnu: ungoogled-chromium: Update to 81.0.4044.129-0.c2a89fb [security fixes]....This fixes CVE-2020-6462 and CVE-2020-6461. * gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.129. (%ungoogled-revision): Set to c2a89fb6b5b559c826796c811741fa8ed3e11de8. (%chromium-origin, %ungoogled-origin): Update hashes. Marius Bakke
2020-04-28gnu: Add variant-tools....* gnu/packages/bioinformatics.scm (variant-tools): New variable. Ricardo Wurmus
2020-04-28gnu: Add hdf5-blosc....* gnu/packages/maths.scm (hdf5-blosc): New variable. Ricardo Wurmus
2020-04-28gnu: Add c-blosc....* gnu/packages/compression.scm (c-blosc): New variable. Ricardo Wurmus
2020-04-28gnu: Add kbdd-0.7.1...* gnu/packages/xdisorg.scm (kbdd): New variable. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> Boris A. Dekshteyn
2020-04-28gnu: ecl: Update to 20.4.24....* gnu/packages/lisp.scm (ecl): Update to 20.4.24. [native-inputs]: Add texinfo to make the manual. [license]: Set to lgpl2.1+. Pierre Neidhardt
2020-04-28gnu: sbcl-cl-cffi-gtk: Link source to parent to reduce closure size....* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency. Pierre Neidhardt
2020-04-28gnu: sbcl-cl-cffi-gtk-gdk: Link source to parent to reduce closure size....* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency. Pierre Neidhardt
2020-04-28gnu: sbcl-cl-cffi-gtk-gdk-pixbuf: Link source to parent to reduce closure size....* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk-pixbuf)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency. Pierre Neidhardt
2020-04-28gnu: sbcl-cl-cffi-gtk-pango: Link source to parent to reduce closure size....* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-pango)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency. Pierre Neidhardt
2020-04-28gnu: sbcl-cl-cffi-gtk-cairo: Link source to parent to reduce closure size....* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-cairo)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency. Pierre Neidhardt
2020-04-28gnu: sbcl-cl-cffi-gtk-gio: Link source to parent to reduce closure size....* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gio)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency. Pierre Neidhardt
2020-04-28gnu: sbcl-cl-cffi-gtk-gobject: Link source to parent to reduce closure size....* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gobject)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency. Pierre Neidhardt
2020-04-28gnu: Add emacs-trashed....* gnu/packages/emacs-xyz.scm (emacs-trashed): New variable. Pierre Neidhardt
2020-04-28gnu: gnuradio-osmosdr: Add hackrf support....* gnu/packages/radio.scm (gnuradio-osmosdr)[inputs]: Add hackrf. Guillaume Le Vaillant
2020-04-28gnu: Add hackrf....* gnu/packages/radio.scm (hackrf): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Christopher Howard
2020-04-28gnu: hpcguix-web: Use guile3.0-guix....* gnu/packages/web.scm (hpcguix-web): Update to latest revision and use guile3.0 inputs. Roel Janssen
2020-04-28gnu: python-scikit-learn: Make python-joblib a propagated input....* gnu/packages/machine-learning.scm (python-scikit-learn) [native-inputs]: Move 'python-joblib' to ... [propagated-inputs]: ... here. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com> Konrad Hinsen
2020-04-28gnu: gst-kaldi-nnet2-online: Update to 0-2.cb227ef....* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to 0-2.cb227ef. Ricardo Wurmus
2020-04-28gnu: kaldi: Update to 0-2.d4791c0....* gnu/packages/machine-learning.scm (kaldi): Update to 0-2.d4791c0. Ricardo Wurmus
2020-04-28gnu: r-hdf5array: Update to 1.14.4....* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.4. Ricardo Wurmus
2020-04-28gnu: r-seurat: Update to 3.1.5....* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.5. [propagated-inputs]: Remove r-metap. Ricardo Wurmus
2020-04-28gnu: r-topicmodels: Update to 0.2-11....* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-11. Ricardo Wurmus
2020-04-28gnu: r-stopwords: Update to 2.0....* gnu/packages/cran.scm (r-stopwords): Update to 2.0. [propagated-inputs]: Add r-desc and r-usethis. Ricardo Wurmus
2020-04-28gnu: r-fda: Update to 5.1.4....* gnu/packages/cran.scm (r-fda): Update to 5.1.4. Ricardo Wurmus
2020-04-28gnu: r-abtest: Update to 0.2.1....* gnu/packages/cran.scm (r-abtest): Update to 0.2.1. [propagated-inputs]: Add r-qgam; remove r-vgam. Ricardo Wurmus
2020-04-28gnu: Add r-qgam....* gnu/packages/cran.scm (r-qgam): New variable. Ricardo Wurmus
2020-04-28gnu: r-systemfonts: Update to 0.2.0....* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.0. [inputs]: Remove freetype. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-04-28gnu: r-dalex: Update to 1.2.0....* gnu/packages/cran.scm (r-dalex): Update to 1.2.0. [propagated-inputs]: Add r-ibreakdown and r-ingredients. Ricardo Wurmus
2020-04-28gnu: r-rex: Update to 1.2.0....* gnu/packages/cran.scm (r-rex): Update to 1.2.0. [propagated-inputs]: Remove r-magrittr. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-04-28gnu: r-optparse: Update to 1.6.6....* gnu/packages/cran.scm (r-optparse): Update to 1.6.6. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-04-28gnu: r-sf: Update to 0.9-2....* gnu/packages/cran.scm (r-sf): Update to 0.9-2. Ricardo Wurmus
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