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2023-10-06gnu: r-dt: Update to 0.30.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dt): Update to 0.30.
2023-10-06gnu: r-hunspell: Update to 3.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-hunspell): Update to 3.0.3.
2023-10-06gnu: r-aplot: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-aplot): Update to 0.2.2.
2023-10-06gnu: r-chk: Update to 0.9.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-chk): Update to 0.9.1.
2023-10-06gnu: r-sungeo: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sungeo): Update to 1.1.1. [propagated-inputs]: Remove r-fasterize; add r-stringr and r-terra.
2023-10-06gnu: Add suitesparse-umfpack.David Elsing
* gnu/packages/maths.scm (suitesparse-umfpack): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-spqr.David Elsing
* gnu/packages/maths.scm (suitesparse-spqr): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-spex.David Elsing
* gnu/packages/maths.scm (suitesparse-spex): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-mongoose.David Elsing
* gnu/packages/maths.scm (suitesparse-mongoose): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-rbio.David Elsing
* gnu/packages/maths.scm (suitesparse-rbio): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-ldl.David Elsing
* gnu/packages/maths.scm (suitesparse-ldl): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-klu.David Elsing
* gnu/packages/maths.scm (suitesparse-klu): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-cxsparse.David Elsing
* gnu/packages/maths.scm (suitesparse-cxsparse): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-cholmod.David Elsing
* gnu/packages/maths.scm (suitesparse-cholmod): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add metis-suitesparse.David Elsing
* gnu/packages/maths.scm (metis-suitesparse): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add gklib-suitesparse.David Elsing
* gnu/packages/maths.scm (gklib-suitesparse): New variable. * gnu/packages/patches/gklib-suitesparse.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add metis-5.2.David Elsing
* gnu/packages/maths.scm (metis-5.2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add gklib.David Elsing
* gnu/packages/maths.scm (gklib): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-ccolamd.David Elsing
* gnu/packages/maths.scm (suitesparse-ccolamd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-colamd.David Elsing
* gnu/packages/maths.scm (suitesparse-colamd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-camd.David Elsing
* gnu/packages/maths.scm (suitesparse-camd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-btf.David Elsing
* gnu/packages/maths.scm (suitesparse-btf): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-amd.David Elsing
* gnu/packages/maths.scm (suitesparse-amd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: Add suitesparse-config.David Elsing
The suitesparse-source variable contains the entire SuiteSparse source code, which is used for all subpackages. * gnu/packages/maths.scm (suitesparse-version, suitesparse-source, suitesparse-config): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: suitesparse: Tweak description.David Elsing
* gnu/packages/maths.scm (suitesparse)[description]: Mention that all subpackages are included. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-06gnu: guix: Update to e863274.Ludovic Courtès
This includes the ‘guix perform-download’ fix from commit 762fdbdef52b4c17df578478cadc8655d56171a4. * gnu/packages/package-management.scm (guix): Update to e863274.
2023-10-06gnu: Add vendor-reset-linux-module.Lars Rustand
* gnu/packages/linux.scm (vendor-reset-linux-module): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-06gnu: matterbridge: Update to 1.26.0Denis 'GNUtoo' Carikli
* gnu/packages/messaging.scm (matterbridge): Update to 1.26.0 Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org> Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-06gnu: Add python-mapie.Vinicius Monego
* gnu/packages/statistics.scm (python-mapie): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-06system: Modify bash skeleton to colorize 'ip' output.Bruno Victal
* gnu/system/shadow.scm (%default-bashrc): Add an alias for 'ip' that enables output colorization. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-06gnu: r-biomvrcns: Patch R constants.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomvrcns)[arguments]: Add phase 'patch-constants.
2023-10-05services: hurd-vm: Leave root password uninitialized when offloading.Ludovic Courtès
Starting with 953c65ffdd43c02c934518fb7a1c68542584b223, offloading to the Hurd VM would be enabled by default. However, ‘root’ had an empty password so any user on the host could connect to the VM over VNC, log in as root, and potentially populate the host’s store from there. This change fixes that. * gnu/services/virtualization.scm (operating-system-with-locked-root-account): New procedure. (hurd-vm-disk-image)[transform]: Add ‘operating-system-with-locked-root-account’ when offloading.
2023-10-05tests: childhurd: Test SSH connection with a non-root user.Ludovic Courtès
* gnu/tests/virtualization.scm (%childhurd-os): Remove ‘services’ and add ‘users’ to the GNU/Hurd ‘operating-system’ declaration. (run-childhurd-test)[run-command-over-ssh]: Log in as “test” instead of “root”.
2023-10-05services: mcron: Hide ‘mkdir-p’ from (shepherd support).Ludovic Courtès
This a avoids a Guile warning about the name collision with (guix build utils). The warning was introduced by commit e0e85f2b2396c69d078caad9bd8e1a0fddf33a4a. * gnu/services/mcron.scm (mcron-shepherd-services): Hide ‘mkdir-p’.
2023-10-05gnu: guile-ini: Added missing propagated input ‘guile-lib’.Fabio Natali
Fixes <https://issues.guix.gnu.org/66315>. * gnu/packages/guile-xyz.scm (guile-ini)[propagated-inputs]: Add GUILE-LIB. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05gnu: prosody: Update to 0.12.4.André Batista
* gnu/packages/messaging.scm (prosody): Update to 0.12.4. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05gnu: go-ipfs: Update to 0.14.0.Artyom V. Poptsov
* gnu/packages/ipfs.scm (go-ipfs): Update to 0.14.0. [source]: Change "go-ipfs" to "kubo" in the source link. [arguments]: Rename "go-ipfs" to "kubo". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05system: bare-bones: Add comments about nss-cert and NTP service.Nikolaos Chatzikonstantinou
TLS errors may be confusing to some users. Two comments are added: one comment should help clarify the extra step required for root CA certificates to be installed, while the other will help users keep their clocks synchronized, another source of TLS errors due to clock drift. * gnu/system/examples/bare-bones.tmpl: Add nss-cert and NTP service comments. Signed-off-by: Nikolaos Chatzikonstantinou <nchatz314@gmail.com> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05Revert "system: accounts: Export <user-account>."Ludovic Courtès
This reverts commit 03795e2ba27424fc98957da00f6c71325e7ae425. Fixes <https://issues.guix.gnu.org/66279>.
2023-10-05gnu: Add apple-bash.B. Wilson
* gnu/packages/apple.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODELS): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05gnu: rust-trybuild: Update 1.0.19 version hash.Distopico
Fixes <https://issues.guix.gnu.org/66345>. * gnu/packages/crates-io.scm (rust-trybuild): Update 1.0.19 hash. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-10-05gnu: Add cgit-pink.Arun Isaac
* gnu/packages/version-control.scm (cgit-pink): New variable.
2023-10-05gnu: cgit: Fix cross compilation.Arun Isaac
* gnu/packages/version-control.scm (cgit)[native-inputs]: Move bzip2, gzip and xz to ... [inputs]: ... here. Add bash-minimal. [arguments]: Use cc-for-target.
2023-10-05gnu: cgit: Update package style.Arun Isaac
* gnu/packages/version-control.scm (cgit)[arguments]: Rewrite using G-expressions. Do not return #t from custom phases.
2023-10-05gnu: python-pynetbox: Update to 7.2.0.Mathieu Othacehe
* gnu/packages/python-web.scm (python-pynetbox): Update to 7.2.0.
2023-10-05gnu: Add python-pynetbox.Timotej Lazar
* gnu/packages/python-web.scm (python-pynetbox): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-05gnu: Add WCSTools.Sharlatan Hellseher
* gnu/packages/astronomy.scm (wcstools): New variable. * gnu/packages/patches/wcstools-extend-makefiles.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-10-05gnu: r-bayesfactor: Update to 0.9.12-4.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bayesfactor): Update to 0.9.12-4.5.
2023-10-05gnu: r-puniform: Update to 0.2.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-puniform): Update to 0.2.7. [propagated-inputs]: Add r-numderiv.
2023-10-05gnu: r-lubridate: Update to 1.9.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lubridate): Update to 1.9.3.
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