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2024-12-06gnu: Add perl-mojo-dom58.Danny Milosavljevic
* gnu/packages/perl-web (perl-mojo-dom58): New variable.
2024-12-06gnu: Add perl-file-map.Danny Milosavljevic
* gnu/packages/perl.scm (perl-file-map): New variable.
2024-12-06gnu: Add perl-sys-sigaction.Danny Milosavljevic
* gnu/packages/perl.scm (perl-sys-sigaction): New variable.
2024-12-06gnu: Add perl-termreadkey.Danny Milosavljevic
* gnu/packages/perl.scm (perl-termreadkey): New variable.
2024-12-06services: wireguard: Support lists of gexps for most fields.Richard Sent
In order to support more flexibility in Wireguard configuration, ungexp the configuration fields directly instead of ungexp-splicing a sexp calculator. This allows for the fields to take arbitrary gexps instead of only strings which is particularly helpful for the Pre/Post Up/Down commands. * gnu/services/vpn.scm (wireguard-configuration-file): Ungexp configuration lists instead of ungexp-splicing the code surrounding them. * doc/guix.texi (VPN Services)[wireguard]: Document it. Change-Id: If074cbb78473b6fd34e0e4e990d2ed268001d6c7 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-12-06services: wireguard: Add the bootstrap-private-key? field.Richard Sent
The syntax from using the private-key field is more convenient than writing a custom PreUp command (more formatting and preshared keys). Instead of trying to guess if private-key is/is not a file path, add an option to disable bootstrapping while still using private-key. * gnu/services/vpn.scm (<wireguard-configuration>): Add bootstrap-private-key?. (wireguard-activation): Check bootstrap-private-key? before bootstrapping. * doc/guix.texi (VPN Services)[wireguard]: Document it. Change-Id: I6ba71ad58b26743057a221a54a246369022f83a5 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-12-06services: wireguard: Make the private-key field optional.Richard Sent
Users who retrieve the private-key via a PreUp field need to be able to disable the default retrieval mechanism. * gnu/services/vpn.scm (<wireguard-configuration>)[private-key]: Change comment. (wireguard-configuration-file): Conditionally serialize private-key. * gnu/services/vpn.scm (wireguard-activation): Do not create private-key if the field is #f. * doc/guix.texi (VPN Services)[wireguard-configuration]: Document it. Change-Id: Iac419809ae94eb76e97ff1f1749e2f4b3e65bb04 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-12-06gnu: Add emacs-dired-launch.Danny Milosavljevic
* gnu/packages/emacs-xyz.scm (emacs-dired-launch): New variable.
2024-12-06gnu: emacs-jedi: Fix jedi:server-command default.Danny Milosavljevic
* gnu/packages/emacs-xyz.scm (emacs-jedi)[arguments]<#:phases> [patch-jedi:server-command]: Make it a list.
2024-12-06gnu: xdg-desktop-portal-gtk: Make possible to use with xdg-desktop-portal-wlr.Danny Milosavljevic
* gnu/packages/freedesktop.scm (xdg-desktop-portal-gtk)[propagated-inputs]: Replace xdg-desktop-portal with xdg-desktop-portal-next.
2024-12-06gnu: python-debugpy: Update to 1.8.9.Danny Milosavljevic
* gnu/packages/python-xyz.scm (python-debugpy): Update to 1.8.9. Change-Id: I323570fc007af04fa8c9c59571cc3cc79833da04
2024-12-06gnu: python-pydevd: Update to 3.2.3.Danny Milosavljevic
* gnu/packages/python-xyz.scm (python-pydevd): Update to 3.2.3. Change-Id: Ibb1bb9880b2c456f27bf373259a0e604a62b9515
2024-12-06gnu: Update otpclient to 4.0.2Ekaitz Zarraga
Requires updating `libcotp` to 3.1.0, that introduced a new way for testing that requires `criterium`, a package we don't have and that has dependencies that we don't have either. As the tests in `libcotp` are not an exhaustive testsuite and `otpclient` is its only dependent package, tests are disabled for the moment. * gnu/packages/authentication.scm (libcotp): Update to 3.1.0 [arguments] Disable tests. * gnu/packages/password-utils.scm (otpclient): Update to 4.0.2 Change-Id: Ie6d37b5efe59397d4979c7490b94f1c871c27d6d
2024-12-05gnu: Fix java-jaxen.Hartmut Goebel
java-jaxen was missing the dom4j and xom sub-packages. This was caused by java-jaxen-bootstrap deleting the respective directories (which is okay) and java-javen not removing the phase that does this. Solve this by removing the #:phases argument for java-jaxen and thus make guix use the default phases. * gnu/packages/java-xml.scm (java-jaxen)[arguments]: Remove #:phases. , making
2024-12-05gnu: go-github-com-cyphar-filepath-securejoin: Fix url.Simen Endsjø
Fix url incorrectly changed in 9399db35c2105157407fd4a59aeb0cacc58a0c54. * gnu/packages/golang-xyz.scm (go-github-com-cyphar-filepath-securejoin) [origin]: Fix url. Change-Id: Ibac24d11efdd6414bdeb8be2cd2184e21d7f8676 Signed-off-by: Ekaitz Zarraga <ekaitz@elenq.tech>
2024-12-05gnu: eisl: Update to 5.38.Guillaume Le Vaillant
* gnu/packages/lisp.scm (eisl): Update to 5.38. Change-Id: I115706d2b06bed71a24cf2c1ab1f5c1bf2e88284
2024-12-05gnu: gqrx: Update to 2.17.6.Guillaume Le Vaillant
* gnu/packages/radio.scm (gqrx): Update to 2.17.6. Change-Id: Ief1ec50d0e64fa325dc2f270612a978105c05f3a
2024-12-05gnu: Add cl-simple-matrix.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (cl-simple-matrix, ecl-simple-matrix, sbcl-simple-matrix): New variables. Change-Id: I79499aae2c8c7dc0ba2d1193104f2f3dd1d3621c
2024-12-05gnu: make-rust-sysroot: Adjust for newer cross-gcc.Efraim Flashner
* gnu/packages/rust.scm (make-rust-sysroot/implementation) [native-inputs]: Add gcc-14. Change-Id: If9bc74bfe2e236accc39dc09e03b28dee62e332d
2024-12-05gnu: make-rust-sysroot: Simplify native-inputs.Efraim Flashner
* gnu/packages/rust.scm (make-rust-sysroot/implementation) [native-inputs]: Combine the different modify-input branches into one. Change-Id: Ia7df5d1566099f9934a76b2660f46a55547c88b9
2024-12-05gnu: make-rust-sysroot: Accept other mingw targets.Efraim Flashner
* gnu/packages/rust.scm (make-rust-sysroot/implementation)[arguments]: Adjust the custom 'patch-for-mingw phase to generate the name of the mingw input package based on the target architecture. [inputs, native-inputs]: Use make-mingw-w64 to choose the mingw package for the target. Change-Id: I48638095a504675753e65fdb6f0286c31cebde66
2024-12-05gnu: glibc-dynamic-linker: Match all mingw systems.Efraim Flashner
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Match any system which ends in '-mingw'. Change-Id: I057e3d0abfc37f4b2b8784f444bbaf865c67ce3e
2024-12-05Partial revert "gnu: bootstrap: %bootstrap-gcc: Also wrap g++ for the 64bit ↵Zheng Junjie
Hurd." This partially reverts commit 877b925df16740f9419d165d39cb7f191a86d5d1. This part accidentally triggered a world rebuild for non-x86 architectures. Change-Id: Iabc5422bb0e2bb37816ad437994af94d04830cb0
2024-12-05Partial revert "gnu: bootstrap: %bootstrap-glibc: Also fix libm.so."Zheng Junjie
This partially reverts commit 204fe1b1f05f4438d1cf72c568b45696e55e54c9. This part accidentally triggered a world rebuild for non-x86 architectures. Change-Id: I921984ef5eff58792ffc17b64675db6a8e79695c
2024-12-05Partial revert "gnu: make-bootstrap: Update gcc-static to gcc-14, for the ↵Zheng Junjie
64bit Hurd." This partially reverts commit ec8a5ec15f898e864705e5a5c834532e3fa8d0a4. This part accidentally triggered a world rebuild for non-x86 architectures. Change-Id: Id2f9bcbcda8dc86ea407e9a7857a854dc1a742b5
2024-12-04gnu: Add r-ggupset.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggupset): New variable. Change-Id: I044fff58b66dbb56e6b7fb1ebcb5353e7ab3d1f7
2024-12-04gnu: Add skewer.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (skewer): New variable. Change-Id: Ieeb95ed7449b91ea853d73ecca05e5436121df6a
2024-12-04gnu: packages/python-science: Update copyright header.Sharlatan Hellseher
* gnu/packages/python-science.scm: Update copyright header for Antero Mejr <antero@mailbox.org> . Change-Id: I4153d51d74f7de1629d5a7851346021b77e7352d
2024-12-04gnu: Add python-scikit-surprise.Antero Mejr
* gnu/packages/python-science.scm (python-scikit-surprise): New variable. Change-Id: I9b5e13f0c985f34bb0bd759e76ebd27221a340a4 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-04gnu: ikiwiki: Fix build by disabling a test.Janneke Nieuwenhuizen
* gnu/packages/web.scm (ikiwiki)[arguments]: In stage "pre-check", disable failing "t/t.po" test. Change-Id: I4fc1240512b4d3df3ece837521116aee5746e181
2024-12-03gnu: r-rcdt: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcdt)[native-inputs]: Add r-testthat. Change-Id: Ic5358aee6d5174052266dc01b81f618edf931cd2
2024-12-03gnu: r-msnid: Disable vignettes.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msnid)[arguments]: Disable vignettes. Change-Id: I47dc4cf5b6d80699d4f22b2b92382ada7ca3322a
2024-12-03gnu: r-pcaexplorer: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pcaexplorer)[native-inputs]: Add r-airway and r-org-hs-eg-db. Change-Id: Id559bea8cd4308058a06158e74d3e13d7f645572
2024-12-03gnu: Add r-airway.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-airway): New variable. Change-Id: I521c1bf868566f80997c8ba80609fd5709a95694
2024-12-03gnu: r-reportingtools: Add missing inputs.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reportingtools)[native-inputs]: Add r-all, r-genefilter, r-hgu95av2-db, r-org-hs-eg-db, r-org-mm-eg-db, r-org-sc-sgd-db, r-pasilla, and r-shiny. [properties]: Tell updater to ignore r-gsealm. Change-Id: I9512bbc7a96c328ee05e15bc898969494dca4be0
2024-12-03gnu: Add r-faahko.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-faahko): New variable. Change-Id: I70cd662bdd202ac78f5f25235fb7b9b9e7d60b37
2024-12-03gnu: r-xcms: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-xcms)[arguments]: Disable tests. [properties]: Tell updater to ignore r-faahko. [native-inputs]: Add r-msdata. Change-Id: I2ee167828534a4046d15d740f6f25d8eff9d589f
2024-12-03gnu: r-httpgd: Disable tests.Ricardo Wurmus
* gnu/packages/statistics.scm (r-httpgd)[arguments]: Disable tests. [synopsis]: Use lower case and remove extraneous quotes. Change-Id: I25e69987b6c647d14cc51ba01ba2fcfb1163c568
2024-12-03gnu: r-mcmc: Disable vignettes.Ricardo Wurmus
* gnu/packages/cran.scm (r-mcmc)[arguments]: Disable vignettes. Change-Id: I0453d3a812d8e5fea52ab38d16e82f9c5ea439ac
2024-12-03gnu: r-biodb: Disable tests.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodb)[arguments]: Disable tests. Change-Id: I40746a3fbfad0801058b7f34182edc358a863fa2
2024-12-03gnu: discrover: Add missing input.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Add texlive-etoolbox. Change-Id: I42075c05a36a031c40c335a668a8b46a7603b4dd
2024-12-03gnu: r-rtk: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-rtk)[native-inputs]: Add r-testthat. Change-Id: I22bd9756036270cf9e60fcdf1b09f8be8aace74d
2024-12-03gnu: r-assertive: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive)[native-inputs]: Add r-testthat. Change-Id: I0119786699e4353b9254f4a4858a2b0820a85e31
2024-12-03gnu: r-assertive-data: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-data)[native-inputs]: Add r-testthat. Change-Id: Ie47c9aaa6dc8f9bf3f627555bde01eff38b58b7f
2024-12-03gnu: r-assertive-data-uk: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-data-uk)[native-inputs]: Add r-testthat. Change-Id: I9a388538bc3a7b8192132da7139eb6d37ba785c6
2024-12-03gnu: r-assertive-data-us: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-data-us)[native-inputs]: Add r-testthat. Change-Id: Ib2e5540aa6fb409cf807b51871eb80f87d221c5b
2024-12-03gnu: r-assertive-datetimes: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-datetimes)[native-inputs]: Add r-testthat. Change-Id: I41cf25fde0519a2552e2bfabf88325c9790b9598
2024-12-03gnu: r-assertive-code: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-code)[native-inputs]: Add r-testthat. Change-Id: Iab971756002abbe84f7472092db82f62eb9acc55
2024-12-03gnu: r-assertive-strings: Add missing input.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-strings)[native-inputs]: Add r-testthat. Change-Id: Ib4f6eb638105f7d1aaa54972176b8d66704ed2a4
2024-12-03gnu: r-rcas: Add missing inputsRicardo Wurmus
* gnu/packages/bioconductor.scm (r-rcas)[native-inputs]: Add r-biocmanager. [arguments]: Add phases 'skip-bad-tests and 'set-HOME. Change-Id: I952ae31347776dc35cf012aaa8146f38b375957a
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