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2018-05-31gnu: r-kernlab: Update to 0.9-26.Ricardo Wurmus
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-26.
2018-05-31gnu: r-rmysql: Update to 0.10.15.Ricardo Wurmus
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.15.
2018-05-31gnu: r-mice: Update to 3.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mice): Update to 3.0.0. [propagated-inputs]: Add r-broom, r-dplyr, r-mitml, and r-rlang.
2018-05-31gnu: r-callr: Update to 2.0.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-callr): Update to 2.0.4. [propagated-inputs]: Add r-processx; remove r-assertthat, r-crayon, r-debugme, and r-testthat.
2018-05-31gnu: r-openxlsx: Update to 4.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0. [propagated-inputs]: Add r-zip.
2018-05-31gnu: r-shinyace: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.1. [propagated-inputs]: Add r-jsonlite.
2018-05-31gnu: r-processx: Update to 3.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-processx): Update to 3.1.0. [propagated-inputs]: Remove r-debugme; add r-testthat.
2018-05-31gnu: r-ggally: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggally): Update to 1.4.0. [inputs]: Add libressl. [propagated-inputs]: Add r-rlang.
2018-05-31gnu: r-psych: Update to 1.8.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-psych): Update to 1.8.4.
2018-05-31gnu: r-pillar: Update to 1.2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-pillar): Update to 1.2.3.
2018-05-31gnu: r-utf8: Update to 1.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-utf8): Update to 1.1.4.
2018-05-31gnu: r-ggjoy: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggjoy): Update to 0.4.1.
2018-05-31gnu: r-dtw: Update to 1.20-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-dtw): Update to 1.20-1.
2018-05-31gnu: r-ica: Update to 1.0-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ica): Update to 1.0-2.
2018-05-31gnu: r-sm: Update to 2.2-5.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.5.
2018-05-31gnu: r-hardyweinberg: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.1.
2018-05-31gnu: r-ggrepel: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.0.
2018-05-31gnu: r-cvst: Update to 0.2-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-cvst): Update to 0.2-2.
2018-05-31gnu: r-energy: Update to 1.7-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-energy): Update to 1.7-4.
2018-05-31gnu: r-emdbook: Update to 1.3.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-emdbook): Update to 1.3.10.
2018-05-31gnu: r-inline: Update to 0.3.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-inline): Update to 0.3.15.
2018-05-31gnu: r-ff: Update to 2.2-14.Ricardo Wurmus
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.
2018-05-31gnu: r-rcpp: Update to 0.12.17.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.17.
2018-05-31gnu: r-abbyyr: Update to 0.5.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.4.
2018-05-31gnu: Add r-bibtex.Ricardo Wurmus
* gnu/packages/cran.scm (r-bibtex): New variable.
2018-05-31gnu: Add r-reticulate.Ricardo Wurmus
* gnu/packages/cran.scm (r-reticulate): New variable.
2018-05-31gnu: Add r-zip.Ricardo Wurmus
* gnu/packages/cran.scm (r-zip): New variable.
2018-05-31gnu: Add r-mitml.Ricardo Wurmus
* gnu/packages/cran.scm (r-mitml): New variable.
2018-05-31gnu: Add r-pan.Ricardo Wurmus
* gnu/packages/cran.scm (r-pan): New variable.
2018-05-31gnu: Add r-jomo.Ricardo Wurmus
* gnu/packages/cran.scm (r-jomo): New variable.
2018-05-31gnu: r-vegan: Update to 2.5-2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-2.
2018-05-31gnu: linux-libre@4.14: Update to 4.14.47.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.47. (%linux-libre-4.14-hash): Update hash. (linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14) (linux-libre-4.14): Remove patch.
2018-05-31gnu: linux-libre@4.9: Update to 4.9.105.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.105. Remove patch.
2018-05-31gnu: linux-libre@4.4: Update to 4.4.135.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.135. Remove patch.
2018-05-31gnu: mariadb: Update to 10.1.33.Efraim Flashner
* gnu/packages/databases.scm (mariadb): Update to 10.1.33.
2018-05-31gnu: linux-libre: Revert bad upstream patch in 4.14/4.9/4.4 kernels.Mark H Weaver
Apply the 1-line revert from upstream that was the sole fix in 4.14.47, 4.9.105, and 4.4.135. Here we cherry-pick the patch until the corresponding linux-libre versions are released. * gnu/packages/linux.scm (linux-libre-4.14, linux-libre-4.9) (linux-libre-arm-generic-4.14, linux-libre-arm-omap2plus-4.14) (linux-libre-4.4): Add the patch.
2018-05-31gnu: 0ad: Update to 0.0.23-alpha.Jonathan Brielmaier
* gnu/packages/games.scm (0ad-data, 0ad): Update to 0.0.23-alpha. [source]: Use HTTPS URL. [inputs]: Add libsodium. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-05-31gnu: knot: Update to 2.6.7.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (knot): Update to 2.6.7.
2018-05-31gnu: duperemove: Update to 0.11.Tobias Geerinckx-Rice
* gnu/packages/disk.scm (duperemove): Update to 0.11.
2018-05-31gnu: sakura: Update to 3.6.0.Tobias Geerinckx-Rice
* gnu/packages/terminals.scm (sakura): Update to 3.6.0.
2018-05-31gnu: stunnel: Update to 5.46.Tobias Geerinckx-Rice
* gnu/packages/web.scm (stunnel): Update to 5.46.
2018-05-31gnu: mkvtoolnix: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/video.scm (mkvtoolnix)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-31gnu: liba52: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/video.scm (liba52)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-31gnu: aalib: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/video.scm (aalib)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-31gnu: xapian: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/search.scm (xapian)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-31gnu: khal: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/calendar.scm (khal)[arguments]: Substitute INVOKE for SYSTEM* and explicitly return #t from phases where needed.
2018-05-31gnu: rss-bridge: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/web.scm (rss-bridge)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-31gnu: python-clf: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/web.scm (python-clf)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-31gnu: python-internetarchive: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/web.scm (python-internetarchive)[arguments]: Substitute INVOKE for SYSTEM*.
2018-05-31gnu: httptunnel: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/web.scm (httptunnel)[arguments]: Substitute INVOKE for SYSTEM*.
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