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2021-07-25gnu: r-structuralvariantannotation: Update to 1.8.1.Tobias Geerinckx-Rice
The previous 1.8.0 source tarball has vanished. * gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.1. [propagated-inputs]: Add r-genomicfeatures.
2021-07-25gnu: Add python-hyperopt.Vinicius Monego
* gnu/packages/machine-learning.scm (python-hyperopt): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-25gnu: Add emacs-ob-async.Vinicius Monego
* gnu/packages/emacs-xyz.scm (emacs-ob-async): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-25gnu: oil: Respect #:tests?.Arun Isaac
* gnu/packages/shells.scm (oil)[arguments]: Respect #:tests? in the custom check phase.
2021-07-25gnu: oil: Update to 0.9.0.Felix Gruber
* gnu/packages/shells.scm (oil): Update to 0.9.0. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-07-25gnu: Add marble-qt.Wiktor Żelazny
* gnu/packages/patches/marble-qt-add-qt-headers.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/geo.scm (marble-qt): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-25gnu: gmnisrv: Update to 0-2.32854b7.Sarah Morgensen
Update to latest commit. gmnisrv uses v3 X509 certificates now, and so "requires fresh certificates, which could break clients with strict trust-on-first-use policies." gnu/packages/web.scm (gmnisrv): Update to 0-2.32854b7. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-07-25gnu: emacs-nov-el: Update to 0.3.4.Morgan Smith
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.3.4. [arguments]<#:emacs>: Use emacs for libxml. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-07-25gnu: weston: Enable some features.Raghav Gururajan
* gnu/packages/freedesktop.scm (weston)[inputs]: Add freerdp, gstreamer and gst-plugins-base. [configure-flags](backend-rdp,remoting): Remove flags. (backend-default): New flag.
2021-07-25gnu: freerdp: Propagate some inputs as per pkg-config files.Raghav Gururajan
* gnu/packages/rdesktop.scm (freerdp)[inputs]: Move libxkbcommon, openssl and wayland to ... [propagated-inputs]: ... here.
2021-07-25gnu: weston: Fix package inputs.Raghav Gururajan
The newly added inputs are referenced by the package but was missing in the package definition. Some of these inputs might have been used by the package indirectly via propagation from other inputs. The moved inputs are referenced in pkg-config files. * gnu/packages/freedesktop.scm (weston)[inputs]: Add glib, libdrm, libpng, libx11 and libxcb. Move libxkbcommon and wayland to ... [propagated-inputs]: ... here. Add pixman.
2021-07-25gnu: weston: Update to 9.0.0 and adjust arguments+inputs accordingly.Raghav Gururajan
* gnu/packages/freedesktop.scm (weston)[version]: Update to 9.0.0. [configure-flags](c_link_args): New flag. (simple-dmabuf-drm): Remove flag. [native-inputs]: Add mscgen. [inputs]: Add pipewire.
2021-07-25gnu: perl-http-cookiejar: Update to 0.012.Tobias Geerinckx-Rice
This fixes its build which had started to fail due to a time-bomb: Expires=Wed, 09 Jun 2021 10:18:14 GMT in an examples.t test cookie. * gnu/packages/web.scm (perl-http-cookiejar): Update to 0.012.
2021-07-24gnu: esmtp: Fix build with libesmtp >= 1.1.0.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (esmtp)[source]: Add patch. * gnu/packages/patches/esmtp-add-lesmtp.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-07-24services: dhcpd: Fix activation with IPv6 configuration.Guillaume Le Vaillant
* gnu/services/networking.scm (dhcpd-activation): Pass the IP version parameter to dhcpd.
2021-07-24gnu: Add feeder.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-feeder, ecl-feeder, sbcl-feeder): New variables.
2021-07-23gnu: java-xmlpull2: Use mirrored source and archived home page.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (java-xmlpull2)[source]: Download from a Gentoo distfiles mirror. [home-page]: Point to an archive.org snapshot.
2021-07-23gnu: graphviz: Use HTTPS home page.Marius Bakke
* gnu/packages/graphviz.scm (graphviz)[home-page]: Use HTTPS.
2021-07-23gnu: php: Update to 7.4.21.Marius Bakke
* gnu/packages/php.scm (php): Update to 7.4.21. [arguments]: Remove trailing #t's. [native-inputs]: Remove INTLTOOL. Add GETTEXT-MINIMAL.
2021-07-23gnu: tmux-themepack: Tweak description.Ludovic Courtès
* gnu/packages/tmux.scm (tmux-themepack)[description]: Tweak.
2021-07-23gnu: tmux-themepack: Update to 1.1.0.Matthew James Kraai
* gnu/packages/tmux.scm (tmux-themepack): Update to 1.1.0. [arguments]: Install only selected files. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-23gnu: modules: Avoid FHS file names in 'add.modules'.Ludovic Courtès
* gnu/packages/package-management.scm (modules)[arguments]: Add 'patch-add-modules' phase.
2021-07-23gnu: Add modules.Ivan Gankevich
* gnu/packages/package-management.scm (modules): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-23gnu: hpcguix-web: Update to 0.1.0.Ludovic Courtès
* gnu/packages/web.scm (hpcguix-web): Update to 0.1.0. [arguments]: In 'wrap-program' phase, change "/bin/run" to "/bin/hpcguix-web". [inputs]: Add BASH-MINIMAL. * gnu/services/web.scm (hpcguix-web-shepherd-service): Run "/bin/hpcguix-web".
2021-07-23gnu: pari-gp: Update to 2.13.2.Andreas Enge
* gnu/packages/algebra.scm (pari-gp): Update to 2.13.2.
2021-07-23gnu: gnome-maps: Update to 3.38.5.Leo Prikler
* gnu/packages/geo.scm (gnome-maps): Update to 3.38.5.
2021-07-23gnu: Add radvd.Guillaume Le Vaillant
* gnu/packages/admin.scm (radvd): New variable.
2021-07-22gnu: Add drawterm.宋文武
* gnu/packages/plan9.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2021-07-22gnu: Add cl-libxml2.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-libxml2, ecl-cl-libxml2, sbcl-cl-libxml2): New variables.
2021-07-22gnu: r-opencpu: Update to 2.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.4.
2021-07-22gnu: Add r-opencpuSharlatan Hellseher
* gnu/packages/cran.scm: (r-opencpu): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-07-22gnu: Add r-protoliteSharlatan Hellseher
* gnu/packages/cran.scm: (r-protolite): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2021-07-22gnu: Add r-webutilsSharlatan Hellseher
* gnu/packages/cran.scm (r-webutils): New variable.
2021-07-22gnu: Add python-dolfin-adjoint.Paul Garlick
* gnu/packages/simulation.scm (python-dolfin-adjoint): New variable.
2021-07-22gnu: Add abjad-ext-ipython.jgart
* gnu/packages/music.scm (abjad-ext-ipython): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22gnu: Add abjad-ext-nauert.jgart
* gnu/packages/music.scm (abjad-ext-nauert): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22gnu: Add abjad-ext-rmakers.jgart
* gnu/packages/music.scm (abjad-ext-rmakers): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22gnu: abjad: Remove obsolete phase.Efraim Flashner
* gnu/packages/music.scm (abjad)[arguments]: Remove custom 'patch-source phase.
2021-07-22gnu: abjad: Move lilypond to inputs.Efraim Flashner
* gnu/packages/music.scm (abjad)[native-inputs]: Move lilypond ... [inputs]: ... to here.
2021-07-22gnu: abjad: Improve description.jgart
* gnu/packages/music.scm (abjad)[description]: Improve abjad's description. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22gnu: abjad: Move python-ply to propagated-inputs.jgart
* gnu/packages/music.scm (abjad)[ntaive-inputs]: Move python-ply ... [propagated-inputs]: ... to here. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22gnu: python-abjad: Rename to abjad.jgart
* gnu/packages/music.scm (abjad): Rename from python-abjad. (python-abjad): Keep as deprecated package. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-22gnu: python-pysam: Make the check phase honor the tests? argument.Efraim Flashner
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Adjust custom 'check phase to skip tests when #:tests is #f.
2021-07-22gnu: python-pysam: Update to 0.16.0.1.Efraim Flashner
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.16.0.1. [arguments]: Update custom 'check phase. [propagated-inputs]: Replace htslib-1.9 with 1.10. [native-inputs]: Add python-pytest. Replace samtools-1.9 with 1.10, bcftools-1.9 with 1.10. (bcftools-1.9): Replace with bcftools-1.10. [native-inputs]: Replace htslib-1.9 with 1.10. (samtools-1.9): Replace with samtools-1.10. [inputs]: Replace htslib-1.9 with 1.10.
2021-07-22gnu: Add htslib-1.10.Efraim Flashner
* gnu/packages/bioinformatics.scm (htslib-1.10): New variable.
2021-07-22gnu: python-biopython: Update to 1.73.Efraim Flashner
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.73.
2021-07-21gnu: onionshare: Update to 2.3.2.Eric Bavier
* gnu/packages/tor.scm (onionshare-cli, onionshare): Update to 2.3.2. (onionshare)[inputs]: Add python-colorama. [arguments]: Insert "import pytest" for later "pytest.mark.skip".
2021-07-22gnu: Add emacs-seeing-is-believing.Joseph LaFreniere
* gnu/packages/emacs-xyz.scm (emacs-seeing-is-believing): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-07-22gnu: guile-git: Update to 0.5.2.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/48855>. Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>. * gnu/packages/guile.scm (guile-git): Update to 0.5.2.
2021-07-21gnu: extempore: Update to 0.8.9.Giacomo Leidi
* gnu/packages/music.scm (extempore): Update to 0.8.6. [source]: Portaudio is no more in-tree. [arguments]: Load external libraries through patched CMakeLists.txt. [phases]: Symlink assets. * gnu/packages/patches/extempore-unbundle-external-dependencies.patch: Update accordingly. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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