aboutsummaryrefslogtreecommitdiff
path: root/gnu
AgeCommit message (Collapse)Author
2024-03-29gnu: python-distributed: Disable parallel tests.Sharlatan Hellseher
As seen in <https://ci.guix.gnu.org/build/3708961/log/raw>, parallel tests introduced package build regression. * gnu/packages/python-science.scm (python-distributed) [arguments] <#:test-flags>: Disable parallel tests. [native-inputs]: Remove python-pytest-xdist. Change-Id: I3a04098604fa03ab91ceb228dd70c34c3d84db78
2024-03-29gnu: Add python-apprise.Fabio Natali
* gnu/packages/python-xyz.scm (python-apprise): New variable. Change-Id: I55b8c7b558ce34835cff31b9fac6ff3b81ff5fec Signed-off-by: jgart <jgart@dismail.de>
2024-03-29gnu: krita: Update to 5.2.1.Mehmet Tekman
Due to a missing patch in the upstream libraqm, we cannot depend on the existing libraqm library, but must instead use the one embedded in the package. It compiles, but needs to be told to use the -fPIC flag. Dependency fftw also does not provide the required CMake file FFTW3Librarydepends.cmake, and only does so when compile via cmake and not gnu. Due to the many packages that depend on fftw, a seperate fftw-cmake was used. * gnu/packages/kde.scm (krita): Update to 5.2.1. Change-Id: I956451d05d8499580b909e843fd8e4418e396642 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-29gnu: fftw-cmake: New Variables.Mehmet Tekman
This is a clone of the fftw function, but uses cmake to build in order for the FFTW3LibraryDepends.cmake file to be built, neccesary for packages with cmake builds that depend on fftw3. See: https://bugzilla.redhat.com/show_bug.cgi?id=1729652#c5 This variable inherits from the existing fftw3 in order to not break any downstream packages that make use of the target optimizations given by the gnu build. * gnu/packages/algebra.scm (fftw-cmake): New variable. Change-Id: Idb06f86031123de3b2621953a385f4f57d9b5cc5 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-29gnu: python-statsmodels: Update home-page url.jgart
* gnu/packages/statistics.scm (home-page): Update home-page url. [home-page]: Add package associated versioning to project website url. Change-Id: I0909674d0f8c502aa55f4f7423308bd0eaaaf52e
2024-03-29gnu: python-hvpy: Update to 1.1.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-hvpy): Update to 1.1.0. [propagated-inputs]: Remove python-pydantic; add python-pydantic-2 and python-pydantic-settings. Change-Id: Id567cff01204d2e8d71bc49ec9ffc88b2bbb3f4e
2024-03-29gnu: Add python-pydantic-settings.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-pydantic-settings): New variable. Change-Id: I410edc37f17a293f3d40ce9a2ab6416ea35bae39
2024-03-29gnu: Add python-pytest-examples.Sharlatan Hellseher
* gnu/packages/check.scm (python-pytest-examples): New variable. Change-Id: I8199a7d7294c3b04134474f9f116468ac327cba8
2024-03-29gnu: Add python-cmyt.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-cmyt): New variable. Change-Id: I45caa38fc391fe7890f87f41b18d3cfa8da07c80
2024-03-29gnu: Add python-ewah-bool-utils.Sharlatan Hellseher
* gnu/packages/python-compression.scm (python-ewah-bool-utils): New variable. Change-Id: Ib9730d599f66bc2b864bfd305135e367f89ba9dd
2024-03-29gnu: Add python-nose-exclude.Sharlatan Hellseher
* gnu/packages/check.scm (python-nose-exclude): New variable. Change-Id: I5c91b682163890c822f7d4a548e92fdd287d78a2
2024-03-29gnu: Add python-astroplan.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astroplan): New variable. Change-Id: Ia13998c3ccfaab57a9d0670dbd7b4e1c1b92b57a
2024-03-29gnu: Add python-asdf-compression.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-compression): New variable. Change-Id: I221990d2f25f31dd5272a3ccc4c603da8dac353b
2024-03-29gnu: Add python-asdf-zarr.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-zarr): New variable. Change-Id: If26b31aeeb90a595a4d384755ba9060101ee4c8a
2024-03-29gnu: python-pynbody: Update to 1.6.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-pynbody): Update to 1.6.0. [arguments] <#:test-flags>: Disable more tests. Change-Id: Icfb65fccbd1e7694a64aa52caa7b905e1b9a1a87
2024-03-29gnu: python-crds: Update to 11.17.19.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-crds): Update to 11.17.19. Change-Id: I455e3d6aeb0188d13c02e1c57aa3793689c0de5c
2024-03-29gnu: python-stdatamodels: Update to 1.10.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stdatamodels): Update to 1.10.0. Change-Id: I69f98de3e98d22c636ec726ab3ce17f5d96fbb51
2024-03-29gnu: python-stcal: Enable sanity check.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stcal) [arguments] <#:phases>: Revert 'sanity-check phase. Add 'silent-check-for-opencv phase. Change-Id: Ifd3ae01d261fe6dba8f5e75d4a5134510d826a57
2024-03-29gnu: python-stcal: Update to 1.6.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-stcal): Update to 1.6.1. Change-Id: Ifca867967c302234d38bbe4fa6fcd2a1d61914cf
2024-03-29gnu: python-specutils: Update to 1.13.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-specutils): Update to 1.13.0. Change-Id: Ic935f471fd9f5e27745c370940e3f70f715d2ca4
2024-03-29gnu: python-glymur: Update to 0.12.9.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-glymur): Update to 0.12.9. Change-Id: Ifb84738df85cb6142fc5ecafa164a6dc4148a69e
2024-03-29gnu: python-radiospectra: Update to 0.5.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-radiospectra): Update to 0.5.0. Change-Id: I9146be6756530e5bda59ea53e3200ed8403fd672
2024-03-29gnu: python-suntime: Refresh package style.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-suntime): Re-indent package. [build-system]: Swap to pyproject-build-system [description]: Concatenate small paragraphs into single one. Change-Id: I368f042eeab2f49c6f41b2ccf0c9a69c8abfec17
2024-03-29gnu: python-suntime: Update to 1.3.2.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-suntime): Update to 1.3.2. Change-Id: I0af01462f3732ce9ece89a3d8bd8533563ece929
2024-03-29gnu: python-drizzle: Update to 1.15.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-drizzle): Update to 1.15.1. Change-Id: I263ef052f61f0b6088be408b208fa31d55050429
2024-03-29gnu: python-gwcs: Update to 0.21.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-gwcs): Update to 0.21.0. Change-Id: I3e634366c4eaf36b76dd7e3e120fb3ed0b21dcab
2024-03-29gnu: python-astroquery: Update to 0.4.7.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astroquery): Update to 0.4.7. [arguments] <#:test-flags>: Disable one failing test. <#:phases>: Remove 'prepare-test-environment phase. Add custom 'check phase. Change-Id: I159a9d765de7f8de00c4bf226febfc90d2ba6c76
2024-03-29gnu: python-pyvo: Update to 1.5.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-pyvo): Update to 1.5.1. Change-Id: I51228822626a0fac9013580a7bfb7160980ac8fb
2024-03-29gnu: python-asdf-astropy: Update to 0.6.0Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.6.0. Change-Id: I5eca1d6c113b053b8353ed43e7dfc2c7165a3139
2024-03-29gnu: python-asdf-wcs-schemas: Update to 0.4.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-wcs-schemas): Update to 0.4.0. [propagated-inputs]: Remove python-asdf-unit-schemas; add python-asdf-coordinates-schemas. Change-Id: I491f3f7b96b11a1ac894a30aa304d3042299de99
2024-03-29gnu: python-asdf-coordinates-schemas: Update to 0.3.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-coordinates-schemas): Update to 0.3.0. Change-Id: Iad7848823f4b6c996aeb74919cbf252014126075
2024-03-29gnu: python-asdf: Update to 3.1.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf): Update to 3.1.0. [arguments] <#:phases>: Add 'fix-test-setup phase. <#:test-arguments>: Move "-p no:legacypath" option from pyproject.toml to here. Change-Id: Ief5734d97d483d2e7af3ea59d702fd4697eb048a
2024-03-29gnu: python-asdf-transform-schemas: Update to 0.5.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-transform-schemas): Update to 0.5.0. Change-Id: Ibf122fa98260de9a472a9c2786f85e1f1098fa19
2024-03-29gnu: python-asdf-standard: Update to 1.1.1.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-standard): Update to 1.1.1. [arguments] <#:phases>: Swap 'remove-blocking-tests phases to use <#:test-flags>. <#:test-flags>: Add more file to ignore to break cycle with python-asdf. Change-Id: I8c80d4371adf55de77ef718a21bf8599d0fce17e
2024-03-29gnu: python-asdf-unit-schemas: Update to 0.2.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-asdf-unit-schemas): Update to 0.2.0. Change-Id: Ib767a5b3e1d58205e18eb71465a1505d6ba7a7eb
2024-03-29gnu: python-cdflib: Enable all tests.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-cdflib) [arguments] <#:test-flags>: Remove it to enable all tests. Change-Id: I0fd44c117519efb306573d5ec603c430dbb1dc8c
2024-03-29gnu: python-cdflib: Update to 1.2.6.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-cdflib): Update to 1.2.6. Change-Id: Iae2e39e756e5e9664a1b524aa1155d128dc0292c
2024-03-29gnu: python-astropy-iers-data: Update to 0.2024.3.18.0.29.47.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to 0.2024.3.18.0.29.47. Change-Id: Ibc243250266bc1a2c3733a05f554389d2f1dac2c
2024-03-29gnu: python-ginga: Update to 5.0.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-ginga): Update to 5.0.0. Change-Id: I4b6dee90dded7606e823e1a2a6df7a5dead962d4
2024-03-29gnu: python-glymur: Speed up tests.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-glymur): Enable parallel tests to speed them up. [arguments] <#:test-flags>: Add it with "-n" option. [native-inputs]: Add python-pytest-xdist. Change-Id: Ied066330cc24a50b47307cefb2694675be8af0a4
2024-03-29gnu: python-stdatamodels: Speed up tests.Sharlatan Hellseher
gnu/packages/astronomy.scm (python-stdatamodels): Enable parallel tests to speed them up. [arguments] <#:test-flags>: Add "-n" option. [native-inputs]: Add python-pytest-xdist. Change-Id: I43390240a4a0db48d9abab4c34d1c1c771028486
2024-03-29gnu: python-dask: Speed up tests.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-dask) [arguments] <#:test-flags>: Add option to run tests in parallel. [native-inputs]: Add python-xdist. Reformat as a list. Change-Id: I9b4b1c53f827e1f5d3edd0908f8e37e1a3bddb71
2024-03-29gnu: python-distributed: Speed up tests.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-distributed) [arguments] <#:test-flags>: Add option to run tests in parallel. Disable 3 more flaky tests. [native-inputs]: Add python-pytest-xdist. Sort alphabetically. Change-Id: I588c1a1dc82e3208cc1eeeefbdc58fb080775ac0
2024-03-29gnu: python-zarr: Speed up tests.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-zarr): Use G-expressions. [arguments] <#:test-flags>: Parallelize tests to speed them up. <#:phases>: 'disable-service-tests remove trailing #t from lambda. Use standard 'check phase. [native-inputs]: Add python-fsspec, python-h5py, python-pytest-doctestplus, python-pytest-timeout, and python-pytest-xdist. Change-Id: I3fc4e2a1649ad9f95ed9e3fe87e3f57ad4f58af8
2024-03-29gnu: python-partd: Enable tests.Sharlatan Hellseher
Newer version of the project is migrated to pyproject.toml, this change may help to prepare for the future upgrade. * gnu/packages/python-xyz.scm (python-partd) [build-system]: Swap to pyproject-build-system, allowing to detect tests and run them. Change-Id: Ia4375b83cea6dcbf7781b3dc40f544261075d2ca
2024-03-29gnu: python-zarr: Update to 2.17.1.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.17.1. Change-Id: Id7873b68bb82400f66539d03fe9a357deb61d58c
2024-03-29gnu: python-pytest-filter-subpackage: Update to 0.2.0.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-filter-subpackage): Update to 0.2.0. Change-Id: I04f000b3a75f671340fbd351b06265b99acb3856
2024-03-29gnu: python-pytest-arraydiff: Enable tests.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-arraydiff): Enable tests. [build-system]: Swap to pyproject-build-system. [arguments] <#:test-flags>: Disable tests requiring python-astropy to break dependencies cycle. Change-Id: I0e4b6681d106a999c6fc12c3fd8c8f084762a92e
2024-03-29gnu: python-pytest-arraydiff: Update to 0.6.1.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-arraydiff): Update to 0.6.1. Change-Id: I6dd911eb38597790f66756a77f6086112329a156
2024-03-29gnu: python-pytest-doctestplus: Update to 1.2.0.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-doctestplus): Update to 1.2.0. [arguments] <#:test-flags>: Disable one more failing test. [home-page]: Update accordingly with lint warning. Change-Id: I353a671741cf887c348d627d9e071e3fedcc4edc
generated by cgit