Age | Commit message (Collapse) | Author |
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This reverts commit dc8b3ebe5d4ba2a39c12f62d836963ffee1e4b47.
python-gimmemotifs is not usable without proprietary third-party tools.
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It didn't work when it was introduced in
08acdd0765b5f4fbfafa699a823ea7985d4d35a7.
* gnu/packages/gcc.scm (gcc-11)[arguments]: Remove the procedure arguments,
and use %build-inputs rather than inputs.
* gnu/packages/commencement.scm (gcc-boot0)[native-inputs]: Add hurd-patch, as
this package inherits from gcc-11.
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* gnu/packages/bioinformatics.scm (python-gimmemotifs): New variable.
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* gnu/packages/python-xyz.scm (python-norns): New variable.
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* gnu/packages/python-xyz.scm (python-xdg): New variable.
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* gnu/packages/python-xyz.scm (python-qnorm): New variable.
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* gnu/packages/bioinformatics.scm (python-biofluff): New variable.
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* gnu/packages/bioinformatics.scm (python-genomepy): New variable.
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* gnu/packages/python-xyz.scm (python-filelock-3.5): New variable.
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* gnu/packages/bioinformatics.scm (python-logomaker): New variable.
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* gnu/packages/python-xyz.scm (python-mysql-connector-python): New variable.
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* gnu/packages/protobuf.scm (protobuf-3.20): New variable.
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* gnu/packages/python-xyz.scm (python-palettable): New variable.
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* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.7.2.1.
[build-system]: Use pyproject-build-system.
[arguments]: Ignore tests that require large downloads.
[native-inputs]: Remove python-six; add python-fsspec, python-pytest,
python-pytest-cov, python-mock, and python-numpy.
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Best guess is that they check for broken behavior in one of the
dependencies, which has changed.
* gnu/packages/python-web.scm (python-sanic)[arguments]: Disable more
tests.
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* gnu/packages/python-xyz.scm (python-gssapi): Update to 1.8.2.
[native-inputs]: Add python-cython.
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* gnu/packages/python-xyz.scm (python-k5test): Update to 0.10.3.
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* gnu/packages/python-check.scm (python-atpublic): Update to 3.1.1.
[build-system]: Switch to pyproject-build-system.
[arguments]: Remove #:phases, override build backend.
[native-inputs]: Replace nose2 with pytest, add python-pdm-backend,
python-sybil and python-pytest-cov.
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* gnu/packages/python-build.scm (python-pdm-backend): New variable.
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* gnu/packages/package-management.scm (guix): Update to dc5430c.
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This allows to build font-abattis-cantarell on aarch64-linux.
* gnu/packages/python-xyz.scm (python-fs)[arguments]: Add #:tests?.
[native-inputs]: Turn into the empty list when cross-compiling or when
PYTHON-PYFTPDLIB is not supported.
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* gnu/packages/fontutils.scm (psautohint)[native-inputs]: Remove
PYTHON-FS and PYTHON-PYTEST-RANDOMLY.
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* gnu/services/virtualization.scm (%i486, %sparc64, %aarch64be, %xtensa,
%xtensaeb, %microblaze, %microblazeel, %or1k, %hexagon, %loongson64):
New variables.
(%armeb): Correct family field.
(%qemu-platforms): Add them.
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* gnu/services/linux.scm (%earlyoom-log-rotation): New variable.
(earlyoom-service-type): Add service-extension for log rotation.
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* gnu/packages/vim.scm (vifm): Update to 0.13.
[arguments]: Adjust substitutions in custom 'patch-test-shebangs phase.
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* gnu/packages/bioinformatics.scm (python-screed): Update to 1.1.2.
[build-system]: Use pyproject-build-system.
[native-inputs]: Remove python-pytest.
[inputs]: Remove python-bz2file.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/bioinformatics.scm (python-goatools): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/cran.scm (r-rcircos): New variable.
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* gnu/packages/python-xyz.scm (python-diff-cover): New variable.
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* gnu/packages/python-xyz.scm (python-loguru): New variable.
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* gnu/packages/check.scm (python-pytest-mypy-plugins): New variable.
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* gnu/packages/python-xyz.scm (python-chevron): New variable.
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* gnu/packages/python-xyz.scm (python-iteround): New variable.
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* gnu/packages/radio.scm (airspyhf): Update to 1.6.8-1.40836c5.
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* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.110.
(linux-libre-5.15-pristine-source): Update hash.
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* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.27.
(linux-libre-6.1-pristine-source): Update hash.
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* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.14.
(linux-libre-6.2-pristine-source): Update hash.
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* gnu/packages/terminals.scm (sakura)[native-inputs]: Remove input
labels.
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* gnu/packages/video.scm (peek)[inputs, native-inputs]: Remove labels.
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* gnu/packages/xdisorg.scm (tint2)[native-inputs]: Remove input labels.
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* gnu/packages/xdisorg.scm (maim)[inputs]: Remove labels.
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* gnu/packages/maths.scm (armadillo)[inputs]: Remove labels.
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* gnu/packages/vulkan.scm (vulkan-loader)[arguments]: Skip tests when
building on riscv64-linux.
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* gnu/packages/image.scm (exiv2)[arguments]: Also use the custom
'adjust-tests phase when building for riscv64-linux.
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Where the package consistently fails to build.
* gnu/packages/statistics.scm (r-bigmemory)[supported-systems]: Remove
armhf-linux, aarch64-linux and powerpc64le-linux.
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As this causes issues with gcc-cross-boot0, since it doesn't use gexp's and
that means the builder script ends up broken.
I'm not testing this properly, I've only confirmed that with this change, you
can generate a derivation for hello for i586-gnu where that derivation and all
inputs don't have broken builder scripts. Plus the output for hello on
x86_64-linux is unchanged.
* gnu/packages/gcc.scm (gcc-11)[arguments]: Rewrite to not use gexps.
[native-inputs]: Add a patch for the hurd if that's the target.
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* gnu/packages/patches/dune-common-skip-failing-tests.patch: New file.
* gnu/packages/maths.scm (dune-common)[source]: Add it
* gnu/local.mk (dist_patch_DATA): Register it.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/backup.scm (rdiff-backup): Update to 2.2.4.
[inputs]: Add python-pyaml.
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* gnu/packages/games.scm (pinball): Update to 0.3.20230219.
[inputs]: Use sdl-union.
[arguments]: Adjust configure flags. Use gexps. Remove debug outpu.
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* gnu/packages/wxwidgets.scm (python-wxpython) [outputs]: New field.
[arguments]: Provide the '--debug' build option in the configure phase.
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