| Age | Commit message (Expand) | Author |
|---|
| 2022-10-28 | gnu: flair: Update to 1.6.4....* gnu/packages/bioinformatics.scm (flair): Update to 1.6.4.
[propagated-inputs]: Add python-numpy and python-scipy.
| Ricardo Wurmus |
| 2022-10-28 | gnu: flair: Set R_HOME....* gnu/packages/bioinformatics.scm (flair)[arguments]: Set R_HOME.
| Ricardo Wurmus |
| 2022-10-28 | gnu: flair: Add missing R package....* gnu/packages/bioinformatics.scm (flair)[inputs]: Add r-apeglm.
| Ricardo Wurmus |
| 2022-10-28 | gnu: Add r-debcam....* gnu/packages/bioconductor.scm (r-debcam): New variable.
| Mădălin Ionel Patrașcu |
| 2022-10-28 | gnu: Add r-dmwr2....* gnu/packages/cran.scm (r-dmwr2): New variable.
| Mădălin Ionel Patrașcu |
| 2022-10-28 | gnu: emacs-modus-themes: Update to 3.0.0....* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 3.0.0.
| Nicolas Goaziou |
| 2022-10-28 | gnu: emacs-ediprolog: Update to 2.2....* gnu/packages/emacs-xyz.scm (emacs-ediprolog): Update to 2.2.
| Nicolas Goaziou |
| 2022-10-28 | gnu: emacs-subed: Update to 1.0.16....* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.0.16.
| Nicolas Goaziou |
| 2022-10-28 | gnu: emacs-mmm-mode: Update to 0.5.9....* gnu/packages/emacs-xyz.scm (emacs-mmm-mode): Update to 0.5.9.
| Nicolas Goaziou |
| 2022-10-28 | gnu: emacs-ement: Update to 0.4.1....* gnu/packages/emacs-xyz.scm (emacs-ement): Update to 0.4.1.
| Nicolas Goaziou |
| 2022-10-28 | gnu: r-mixedpower: Fix faulty commit....Fix previous commit, which did not contain the following changes:
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/statistics.scm (r-mixedpower)[source]: Use it.
| Lars-Dominik Braun |
| 2022-10-28 | gnu: icedove: Update to 102.4.1....* gnu/packages/gnuzilla.scm (%icedove-build-id, %icedove-version) Update to 102.4.1.
| Jonathan Brielmaier |
| 2022-10-28 | gnu: r-mixedpower: Improve compatibility with R>=4.2....Upstream’s fix is incomplete and thus commit
7871447cf5d9fc5a7b5fe5277fc5e111e5ce32d7 was insufficient.
* gnu/packages/patches/r-mixedpower-r2power.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/statistics.scm (r-mixedpower)[source]: Use it.
| Lars-Dominik Braun |
| 2022-10-27 | gnu: rottlog: Apply patch adding a Texinfo direntry....Relates to <https://issues.guix.gnu.org/58821>.
* gnu/packages/patches/rottlog-direntry.patch: Add patch.
* gnu/packages/admin.scm (rottlog): Apply it.
* gnu/local.mk (dist_patch_DATA): Register it.
| Maxim Cournoyer |
| 2022-10-27 | gnu: rottlog: Use gexps and bootstrap Autotools build system....* gnu/packages/admin.scm (rottlog) [snippet]: Delete build system files.
Delete trailing #t. Patch Makefile.am instead of Makefile.in. Do not patch
INSTALL_RC and INSTALL_SCRIPT variables default values.
[arguments]: Use gexps. Delete trailing #t.
[make-flags]: Override INSTALL_RC and INSTALL_SCRIPT.
[phases]{fix-configure}: Delete phase.
[native-inputs]: Add autoconf. Sort inputs.
| Maxim Cournoyer |
| 2022-10-27 | gnu: linux-libre: Update to 5.19.17....* gnu/packages/linux.scm (linux-libre-5.19-version): Update to 5.19.17.
(linux-libre-5.19-pristine-source): Update hash.
| Leo Famulari |
| 2022-10-28 | gnu: findutils: Skip failing test on GNU/Hurd....* gnu/packages/base.scm (findutils)[arguments]: Add #:make-flags.
* gnu/packages/commencement.scm (findutils-boot0)[arguments]: Likewise.
| Ludovic Courtès |
| 2022-10-28 | gnu: grep: Skip failing tests on GNU/Hurd....* gnu/packages/base.scm (grep)[arguments]: Add #:make-flags.
| Ludovic Courtès |
| 2022-10-28 | gnu: coreutils: Skip failing tests on GNU/Hurd....* gnu/packages/base.scm (coreutils)[arguments]: Add
"tests/df/unreadable.sh" and "test-perror2" to the 'XFAIL_TESTS' list.
| Ludovic Courtès |
| 2022-10-27 | gnu: swftools: Fix typos....* gnu/packages/animation.scm (swftools)[description]: Avoid uses of "allows
to".
| Vagrant Cascadian |
| 2022-10-27 | gnu: pypy: Remove unused module imports....This is a follow-up to commit 6e7ed040339d815c3a3f72706b75bd0162969c9d.
* gnu/packages/pypy.scm: Remove unused modules.
| Marius Bakke |
| 2022-10-27 | build-system/pyproject: Always run tests verbosely for supported backends....* guix/build-system/pyproject.scm (pyproject-build): Default to '() instead of
#false for TEST-FLAGS.
* guix/build/pyproject-build-system.scm (check): Unconditionally enable
verbose test flags.
* doc/guix.texi (Build Systems): Document this change.
* gnu/packages/fontutils.scm (python-glyphslib)[arguments]: Remove verbosity
from #:test-flags.
* gnu/packages/pdf.scm (python-pydyf, weasyprint)[arguments]: Likewise.
* gnu/packages/python-web.scm (python-openapi-spec-validator)[arguments]: Likewise.
* gnu/packages/python-xyz.scm (python-path, python-tempora)[arguments]: Likewise.
| Marius Bakke |
| 2022-10-27 | gnu: python-deepmerge: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-deepmerge)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
| Marius Bakke |
| 2022-10-27 | gnu: python-scikit-build: Switch to pyproject-build-system....* gnu/packages/python-xyz.scm (python-scikit-build)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
| Marius Bakke |
| 2022-10-27 | gnu: python-cattrs: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-cattrs)[build-system]: Set to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
| Marius Bakke |
| 2022-10-27 | gnu: python-path: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-path-bootstrap)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
(python-path): Remove #:phases. Add #:test-flags.
| Marius Bakke |
| 2022-10-27 | gnu: python-openapi-spec-validator: Use pyproject-build-system....* gnu/packages/python-web.scm (python-openapi-spec-validator)[build-system]:
Set to PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags. Remove obsolete phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
| Marius Bakke |
| 2022-10-27 | gnu: python-openapi-schema-validator: Use pyproject-build-system....* gnu/packages/python-web.scm (python-openapi-schema-validator)[build-system]:
Set to PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
| Marius Bakke |
| 2022-10-27 | gnu: zabbix-cli: Switch to pyproject-build-system....* gnu/packages/monitoring.scm (zabbix-cli)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove check phase.
| Marius Bakke |
| 2022-10-27 | gnu: python-pygmsh: Use pyproject-build-system....* gnu/packages/simulation.scm (python-pygmsh)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
| Marius Bakke |
| 2022-10-27 | gnu: python-tempora: Switch to pyproject-build-system....* gnu/packages/python-xyz.scm (python-tempora)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags. Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
| Marius Bakke |
| 2022-10-27 | gnu: python-mypy-protobuf: Switch to pyproject-build-system....* gnu/packages/protobuf.scm (python-mypy-protobuf)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
| Marius Bakke |
| 2022-10-27 | gnu: python-ufolib2: Use pyproject-build-system....* gnu/packages/fontutils.scm (python-ufolib2)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
| Marius Bakke |
| 2022-10-27 | gnu: python-statmake: Use pyproject-build-system....* gnu/packages/fontutils.scm (python-statmake)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
| Marius Bakke |
| 2022-10-27 | gnu: python-glyphslib: Use pyproject-build-system....* gnu/packages/fontutils.scm (python-glyphslib)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Add #:test-flags. Remove #:phases.
[native-inputs]: Remove PYTHON-PYPA-BUILD and PYTHON-WHEEL.
| Marius Bakke |
| 2022-10-27 | gnu: weasyprint: Use pyproject-build-system....* gnu/packages/pdf.scm (weasyprint)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases. Add #:test-flags.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
| Marius Bakke |
| 2022-10-27 | gnu: python-pydyf: Use pyproject-build-system....* gnu/packages/pdf.scm (python-pydyf)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove #:phases. Add #:test-flags.
[native-inputs]: Remove PYTHON-PYPA-BUILD.
| Marius Bakke |
| 2022-10-27 | gnu: python-autopage: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-autopage)[build-system]: Switch to
PYPROJECT-BUILD-SYSTEM.
[arguments]: Remove redundant phases.
| Marius Bakke |
| 2022-10-27 | build-system: Add pyproject-build-system....This is an experimental build system based on python-build-system
that implements PEP 517-compliant builds.
* doc/guix.texi (Build Systems): Add pyproject-build-system section.
* doc/contributing.texi (Python Modules): Mention pyproject.toml and the
PYTHON-TOOLCHAIN package, as well as differences to python-build-system.
* guix/build-system/pyproject.scm,
guix/build/pyproject-build-system.scm,
gnu/packages/aux-files/python/sanity-check-next.py,
gnu/packages/python-commencement.scm: New files.
* Makefile.am (MODULES): Register the new build systems.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add python-commencement.scm.
* gnu/packages/python.scm (python-sans-pip, python-sans-pip-wrapper): New
variables.
Co-authored-by: Marius Bakke <marius@gnu.org>
| Lars-Dominik Braun |
| 2022-10-27 | gnu: python-pip: Move to (gnu packages python-build)....* gnu/packages/python-xyz.scm (python-pip): Move from here ...
* gnu/packages/python-build.scm (python-pip): ... to here.
| Marius Bakke |
| 2022-10-27 | gnu: pypy: Move to separate module....This removes the need to import (gnu packages python-xyz) in (gnu packages
python), avoiding issues with circular imports.
* gnu/packages/python.scm (pypy): Move…
* gnu/packages/pypy.scm (pypy): …here
* gnu/local.mk: Register new file.
Co-authored-by: Marius Bakke <marius@gnu.org>
| Lars-Dominik Braun |
| 2022-10-27 | gnu: python-setuptools: Move to python-build....* gnu/packages/python-xyz.scm (python-setuptools): Move…
* gnu/packages/python-build.scm: …here.
* gnu/packages/chemistry.scm,
gnu/packages/messaging.scm,
gnu/packages/sequoia.scm,
tests/lint.scm: Adjust module imports accordingly.
Co-authored-by: Marius Bakke <marius@gnu.org>
| Lars-Dominik Braun |
| 2022-10-27 | gnu: Zabbix: Update to 6.0.9....* gnu/packages/monitoring.scm (zabbix-agentd): Update to 6.0.9.
| Marius Bakke |
| 2022-10-27 | gnu: zabbix-agentd: Enable TLS support....* gnu/packages/monitoring.scm (zabbix-agentd)[arguments]: Pass "--with-gnutls"
in #:configure-flags.
[inputs]: Add GNUTLS.
(zabbix-server): Inherit these changes.
| Marius Bakke |
| 2022-10-27 | gnu: flair: Add missing R packages....* gnu/packages/bioinformatics.scm (flair)[propagated-inputs]: Add python-rpy2.
[inputs]: Add r-minimal, r-deseq2, r-drimseq, r-ggplot2, r-lazyeval, r-qqman,
and r-rlang.
[arguments]: Add phase "wrap-executable".
| Ricardo Wurmus |
| 2022-10-27 | gnu: emacs-buttercup: Update to 1.28....* gnu/packages/emacs-xyz.scm (emacs-buttercup): Update to 1.28.
| Nicolas Goaziou |
| 2022-10-27 | gnu: Add r-aseb....* gnu/packages/bioconductor.scm (r-aseb): New variable.
| Mădălin Ionel Patrașcu |
| 2022-10-27 | gnu: Add r-asgsca....* gnu/packages/bioconductor.scm (r-asgsca): New variable.
| Mădălin Ionel Patrașcu |
| 2022-10-27 | gnu: Add r-aspli....* gnu/packages/bioconductor.scm (r-aspli): New variable.
| Mădălin Ionel Patrașcu |
| 2022-10-27 | gnu: Add r-assessorf....* gnu/packages/bioconductor.scm (r-assessorf): New variable.
| Mădălin Ionel Patrașcu |
