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2017-09-01gnu: python-click-threading: Update to 0.4.3.Leo Famulari
* gnu/packages/python.scm (python-click-threading): Update to 0.4.3. [source]: Use pypi-uri.
2017-09-01gnu: python-icalendar: Update to 3.11.7.Leo Famulari
* gnu/packages/python.scm (python-icalendar): Update to 3.11.7.
2017-09-01gnu: r-genomicalignments: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.2.
2017-09-01gnu: r-tidyr: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0. [propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and r-tidyselect.
2017-09-01gnu: Add r-tidyselect.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyselect): New variable.
2017-09-01gnu: r-vegan: Update to 2.4-4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-4. [native-inputs]: Remove r-knitr.
2017-09-01gnu: r-maldiquant: Update to 1.16.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.16.4.
2017-09-01gnu: r-bookdown: Update to 0.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.5.
2017-09-01gnu: r-ksamples: Update to 1.2-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-7.
2017-09-01gnu: r-distillery: Update to 1.0-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-distillery): Update to 1.0-4.
2017-09-01gnu: r-sp: Update to 1.2-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-sp): Update to 1.2-5.
2017-09-01gnu: r-ggally: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggally): Update to 1.3.2.
2017-09-01gnu: r-reshape: Update to 0.8.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-reshape): Update to 0.8.7.
2017-09-01gnu: r-powerlaw: Update to 0.70.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.1.
2017-09-01gnu: r-circlize: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-circlize): Update to 0.4.1.
2017-09-01gnu: r-shape: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-shape): Update to 1.4.3.
2017-09-01gnu: r-tclust: Update to 1.3-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
2017-09-01gnu: r-fastcluster: Update to 1.1.24.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
2017-09-01gnu: r-rcpparmadillo: Update to 0.7.960.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
2017-09-01gnu: r-plotrix: Update to 3.6-6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
2017-09-01gnu: r-httr: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-httr): Update to 1.3.1. [propagated-inputs]: Remove r-digest and r-stringr.
2017-09-01gnu: r-commonmark: Update to 1.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
2017-09-01gnu: r-ade4: Update to 1.7-8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
2017-09-01gnu: r-tibble: Update to 1.3.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
2017-09-01gnu: r-rlang: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
2017-09-01gnu: r-knitr: Update to 1.17.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitr): Update to 1.17.
2017-09-01gnu: r-bh: Update to 1.65.0-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
2017-09-01gnu: r-scales: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-scales): Update to 0.5.0. [propagated-inputs]: Add r-r6 and r-viridislite.
2017-09-01gnu: r-mgcv: Update to 1.8-19.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
2017-09-01gnu: r-matrix: Update to 1.2-11.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
2017-09-01gnu: r-servr: Update to 0.7.Ricardo Wurmus
* gnu/packages/web.scm (r-servr): Update to 0.7.
2017-09-01gnu: php: Update to 7.1.9.Julien Lepiller
* gnu/packages/php.scm (php): Update to 7.1.9.
2017-09-01gnu: java-slf4j-api: Fix tests.Julien Lepiller
* gnu/packages/java.scm (java-slf4j-api)[arguments]: Enable tests Adjust the jar content to prevent a test failure.
2017-09-01gnu: djvulibre: Remove timestamps from .svgz files.Z. Ren
* gnu/packages/djvu.scm (djvulibre)[arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01gnu: Add emacs-tuareg.Oleg Pykhalov
* gnu/packages/ocaml.scm (emacs-tuareg): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01gnu: emacs-ebuild-mode: Update to 1.37.ng0
* gnu/packages/emacs.scm (emacs-ebuild-mode): Update to 1.37. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01gnu: Add emacs-2048-game.ng0
* gnu/packages/emacs.scm (emacs-2048-game): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-01packages: 'fold-packages' takes an optional 'modules' parameter.Ludovic Courtès
Suggested by Christopher Baines <mail@cbaines.net>. * gnu/packages.scm (fold-packages): Add optional 'modules' parameter and honor it.
2017-09-01gnu: r-rcas: Correct license.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rcas)[license]: Use correct license.
2017-09-01gnu: r-rcas: Update to 1.3.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.3.
2017-09-01gnu: mysql: Enable tests on aarch64.Efraim Flashner
* gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling the tests on aarch64-linux.
2017-09-01gnu: vsearch: Update to 2.4.4.Ben Woodcroft
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.4.
2017-09-01gnu: metabat: Update to 2.12.1.Ben Woodcroft
* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1. [source]: Remove it. Use url-fetch.
2017-09-01gnu: netcdf: Fix reproducibility issue; remove unneeded references.Thomas Danckaert
* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded 'Configured On' date; truncate reference to compiler store item.
2017-09-01gnu: hdf4: Avoid unneeded store references to compilers.Thomas Danckaert
* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to truncate hashes of compiler store items.
2017-09-01gnu: hdf5: Avoid unneeded store references to compilers.Thomas Danckaert
* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch "libhdf5.settings", removing references to the C/C++/Fortran compilers.
2017-09-01gnu: hdf5: Add output for fortran interface.Thomas Danckaert
* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran. [outputs]: Add "fortran". [arguments]: Enable Fortran compilation; add "/lib" directory of the fortran output to the runpath of the Fortran libs; add a 'split phase to move all Fortran-related files to the the Fortran output store location.
2017-09-01gnu: python2-larch: Enable tests.Arun Isaac
* gnu/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python2-larch)[source]: Use it. [arguments]: Move 'check' phase to before 'build' phase.
2017-09-01gnu: python2-ttystatus: Enable tests.Arun Isaac
* gnu/packages/python.scm (python2-ttystatus)[arguments]: Replace 'check' phase with custom function.
2017-09-01gnu: python2-cliapp: Enable tests.Arun Isaac
* gnu/packages/python.scm (python2-cliapp)[arguments]: Replace 'check' phase with custom function.
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