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2018-11-25gnu: mdds: Update to 1.4.3.Marius Bakke
* gnu/packages/boost.scm (mdds): Update to 1.4.3.
2018-11-25gnu: python2-numpy@1.8: Provide "python2-nose".Marius Bakke
Also remove other native-inputs since they appear unnecessary. * gnu/packages/python.scm (python2-numpy-1.8)[native-inputs]: New field.
2018-11-25gnu: diffoscope: Update to 106.Julien Lepiller
* gnu/packages/package-management.scm (diffoscope): Update to 106.
2018-11-25gnu: diffoscope: Fix test failure.Julien Lepiller
* gnu/packages/package-management.scm (diffoscope)[arguments]: Remove failing Berkeley DB test.
2018-11-24Merge branch 'master' into core-updatesMarius Bakke
2018-11-24gnu: python-pika: Update to 0.12.0.Marius Bakke
* gnu/packages/python.scm (python-pika): Update to 0.12.0.
2018-11-24gnu: bless: Adjust to zlib static output.Marius Bakke
* gnu/packages/bioinformatics.scm (bless)[inputs]: Add ZLIB:STATIC. [arguments]: Adjust #:make-flags accordingly.
2018-11-24gnu: ocaml-piqilib: Remove duplicate 'home-page' field.Mark H Weaver
This is a followup to commit 564cf93f2aca60171b4b97559ffc6c952e73e8ed. * gnu/packages/ocaml.scm (ocaml-piqilib)[home-page]: Remove duplicate field.
2018-11-24gnu: rhythmbox: Update hash of patch.Mark H Weaver
* gnu/packages/gnome.scm (rhythmbox)[source]: Update hash of the applied patch.
2018-11-24gnu: adb: Fix FTBFS with Glibc 2.28.Marius Bakke
* gnu/packages/android.scm (adb)[arguments]: Add phase 'glibc-compat'.
2018-11-24gnu: python2-fasteners: Propagate python2-futures.Marius Bakke
* gnu/packages/python.scm (python-fasteners)[properties]: New field. (python2-fasteners)[propagated-inputs]: Add PYTHON2-FUTURES.
2018-11-24gnu: python2-futures: Update to 3.2.0.Marius Bakke
* gnu/packages/python.scm (python2-futures): Update to 3.2.0.
2018-11-24gnu: python2-futures: Disable tests.Marius Bakke
* gnu/packages/python.scm (python2-futures)[arguments]: Set #:test? #f.
2018-11-24gnu: sbcl: Update to 1.4.13.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl): Update to 1.4.13. [native-inputs]: Use minimal texlive-union instead of full texlive. [native-inputs]: Use CCL instead of buggy CLISP. [arguments]: Replace all (zero? (system* ...)) by invoke.
2018-11-24gnu: gcl: Remove unnecessary texlive input.Pierre Neidhardt
* gnu/packages/lisp.scm (gcl)[native-inputs]: Remove texlive.
2018-11-24gnu: python-pycurl: Fix FTBFS from 7b844100464633db5455a3931858bb57c9e529e6.Marius Bakke
* gnu/packages/python-web.scm (python-pycurl)[arguments]: Add phase 'configure-tls-backend'.
2018-11-24gnu: ledger: Fix build with Boost >= 1.68.Marius Bakke
* gnu/packages/finance.scm (ledger)[arguments]: Add phase 'boost-compat.
2018-11-24gnu: mosaik: Fix FTBFS from b90289dadc8ee15848ce911a2bdcd3ae8302d58c.Marius Bakke
* gnu/packages/bioinformatics.scm (mosaik)[inputs]: Add ZLIB:STATIC.
2018-11-24gnu: python-cheetah: Update to 3.1.0.Marius Bakke
* gnu/packages/python.scm (python2-cheetah): Rename to ... (python-cheetah): ... this. Update to 3.1.0. [arguments]: Add custom 'check' phase. [propagated-inputs]: Change PYTHON2-MARKDOWN to PYTHON-MARKDOWN. (python2-cheetah): Rewrite in terms of PACKAGE-WITH-PYTHON2.
2018-11-24gnu: python2-cheetah: Update home page.Marius Bakke
* gnu/packages/python.scm (python-cheetah)[home-page]: Update to current.
2018-11-24gnu: clojure: Move to new clojure.scm.Pierre Neidhardt
* gnu/local.mk (clojure): Include new clojure.scm. * gnu/packages/clojure.scm: Add clojure, clojure-algo-generic, clojure-algo-monads, clojure-core-match, clojure-instaparse, clojure-tools-macro. * gnu/packages/lisp.scm: Remove clojure, clojure-algo-generic, clojure-algo-monads, clojure-core-match, clojure-instaparse, clojure-tools-macro.
2018-11-24gnu: femtolisp: Move to scheme.scm.Pierre Neidhardt
* gnu/packages/lisp.scm (femtolisp): Remove. * gnu/packages/scheme.scm (femtolisp): Add.
2018-11-23gnu: Add APFS-FUSE.Leo Famulari
* gnu/packages/file-systems.scm (apfs-fuse): New variable.
2018-11-23gnu: linux-libre: Update to 4.19.4.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.4. (%linux-libre-hash): Update hash.
2018-11-23gnu: linux-libre@4.14: Update to 4.14.83.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.83. (%linux-libre-4.14-hash): Update hash.
2018-11-23gnu: linux-libre@4.9: Update to 4.9.140.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.140.
2018-11-23gnu: linux-libre@4.4: Update to 4.4.164.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.164.
2018-11-24gnu: freedesktop.scm: Sort imports and remove duplicates.Marius Bakke
* gnu/packages/freedesktop.scm: Sort imports alphabetically.
2018-11-24gnu: rust: Don't depend on 'git'.Marius Bakke
* gnu/packages/rust.scm (rust-1.19)[inputs]: Remove GIT. (rust-1.20)[arguments]: Disable Cargo tests that require git. (rust-1.26)[arguments]: Likewise.
2018-11-24gnu: mariadb: Update to 10.1.37 [security fixes].Marius Bakke
This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156, and CVE-2018-3251. See <https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details. * gnu/packages/databases.scm (mariadb): Update to 10.1.37.
2018-11-24Merge branch 'master' into core-updatesMarius Bakke
2018-11-24gnu: libraw: Update to 0.19.1.Marius Bakke
* gnu/packages/photo.scm (libraw): Update to 0.19.1.
2018-11-24gnu: libtorrent-rasterbar: Update to 1.1.11.Marius Bakke
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.11.
2018-11-24gnu: Add deluge.Nam Nguyen
* gnu/packages/bittorrent.scm (deluge): New variable. Co-authored-by: Mike Rosset <mike.rosset@gmail.com> Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-24gnu: libtorrent-rasterbar: Compile Python bindings in C++11 mode.Nam Nguyen
* gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Add phase to substitute setup.py. Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2018-11-24gnu: Add python-service-identity.Nam Nguyen
* gnu/packages/python-crypto.scm (python-service-identity, python2-service-identity): New variables. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: Add emacs-matrix-client.Nicolas Goaziou
* gnu/packages/emacs.scm (emacs-matrix-client): New variable.
2018-11-23gnu: Add emacs-a.Nicolas Goaziou
* gnu/packages/emacs.scm (emacs-a): New variable.
2018-11-23gnu: Add emacs-tracking.Nicolas Goaziou
* gnu/packages/emacs.scm (emacs-tracking): New variable.
2018-11-23gnu: Add emacs-ov.Nicolas Goaziou
* gnu/packages/emacs.scm (emacs-ov): New variable.
2018-11-23gnu: python-slepc4py: Update to 3.10.0.Paul Garlick
* gnu/packages/maths.scm (python-slepc4py): Update to 3.10.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: python-petsc4py: Update to 3.10.0.Paul Garlick
* gnu/packages/maths.scm (python-petsc4py): Update to 3.10.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: slepc: Update to 3.10.1.Paul Garlick
* gnu/packages/maths.scm (slepc): Update to 3.10.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: petsc: Update to 3.10.2Paul Garlick
* gnu/packages/maths.scm (petsc): Update to 3.10.2. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: python-ilinkedlist: Update to 0.4.0.Luther Thompson
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.4.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: pt-scotch, pt-scotch32: Add Open MPI setup phase.Ludovic Courtès
* gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of 'system*'. Add 'mpi-setup' phase. (pt-scotch32)[arguments]: Likewise.
2018-11-23gnu: pigx-scrnaseq: Use latest snakemake.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-4 with snakemake.
2018-11-23gnu: pigx-bsseq: Use latest snakemake.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake-4 with snakemake.
2018-11-23gnu: pigx-chipseq: Use latest snakemake.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake-4 with snakemake.
2018-11-23gnu: python-gevent: Update to 1.3.7.Ricardo Wurmus
* gnu/packages/python.scm (python-gevent): Update to 1.3.7. [arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources". [propagated-inputs]: Add python-objgraph.
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