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2016-10-26gnu: security-token: Use 'license:' prefix.Marius Bakke
* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix. (ykclient)[license]: Add prefix.
2016-10-26gnu: yubico.scm: Rename to security-token.scm.Marius Bakke
* gnu/packages/yubico.scm: Delete file. * gnu/packages/security-token.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
2016-10-26gnu: offlineimap: Install documentation.Marius Bakke
* gnu/packages/mail.scm (offlineimap)[native-inputs]: Add asciidoc and libxslt. [arguments]: Add phases 'build-documentation' and 'install-documentation' to build and install manpages. Also remove unneeded key 'inputs' from 'wrap-binary' phase.
2016-10-26gnu: notmuch: Update to 0.23.1.Marius Bakke
* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch.
2016-10-26gnu: vlc: Add x265 support.Efraim Flashner
* gnu/packages/video.scm (vlc)[inputs]: Add x265.
2016-10-26gnu: gst-plugins-bad: Add x265 support.Efraim Flashner
* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add x265.
2016-10-26gnu: ffmpeg: Add x265 support.Efraim Flashner
* gnu/packages/video.scm (ffmpeg)[inputs]: Add x265. [arguments]: Add '--enable-libx265' flag.
2016-10-26gnu: Add x265.Efraim Flashner
* gnu/packages/video.scm (x265): New variable.
2016-10-26gnu: Add psyclpc.ng0
* gnu/packages/psyc.scm (psyclpc): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-10-26gnu: opensmtpd: Fix 'license' field.Ludovic Courtès
* gnu/packages/mail.scm (opensmtpd)[license]: Use LICENSE:OPENSSL, not OPENSSL. (opensmtpd-extras)[license]: Likewise.
2016-10-26gnu: r-genomationdata: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.6.0.
2016-10-26gnu: r-bamsignals: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.6.0.
2016-10-26gnu: r-rhtslib: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.6.0. [native-inputs]: Add autoconf.
2016-10-26gnu: r-zlibbioc: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.20.0.
2016-10-26gnu: r-motifrg: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.18.0.
2016-10-26gnu: r-seqlogo: Update to 1.40.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.40.0.
2016-10-26gnu: r-genomation: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.6.0. [propagated-inputs]: Add r-rcpp, r-htslib, r-runit, r-s4vectors. [inputs]: Add zlib.
2016-10-26gnu: r-seqpattern: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.6.0. [propagated-inputs]: Add r-kernsmooth.
2016-10-26gnu: r-impute: Update to 1.48.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.48.0.
2016-10-26gnu: r-bsgenome: Update to 1.42.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.42.0.
2016-10-26gnu: r-topgo: Update to 2.26.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.26.0. [propagated-inputs]: Add r-dbi.
2016-10-26gnu: r-graph: Update to 1.52.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-graph): Update to 1.52.0.
2016-10-26gnu: r-go-db: Update to 3.4.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.4.0.
2016-10-26gnu: r-genomicfeatures: Update to 1.26.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.0.
2016-10-26gnu: r-rtracklayer: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.0.
2016-10-26gnu: r-genomicalignments: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.10.0.
2016-10-26gnu: r-summarizedexperiment: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.4.0.
2016-10-26gnu: r-rsamtools: Update to 1.26.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.26.1.
2016-10-26gnu: r-biostrings: Update to 2.42.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.0.
2016-10-26gnu: r-biocparallel: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.8.0.
2016-10-26gnu: r-biomart: Update to 2.30.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.30.0.
2016-10-26gnu: r-annotationdbi: Update to 1.36.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.0.
2016-10-26gnu: r-biobase: Update to 2.34.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.34.0.
2016-10-26gnu: r-genomicranges: Update to 1.26.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.1. [propagated-inputs]: Add r-iranges, r-s4vectors.
2016-10-26gnu: r-xvector: Update to 0.14.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.0.
2016-10-26gnu: r-limma: Update to 3.30.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.0.
2016-10-26gnu: r-variantannotation: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.0. [propagated-inputs]: Add r-biobase, r-biostrings, r-iranges, r-rtracklayer, r-s4vectors, r-xvector.
2016-10-26gnu: r-edger: Update to 3.16.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.0. [propagated-inputs]: Add r-locfit.
2016-10-26gnu: r-genomeinfodb: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.0.
2016-10-26gnu: r-iranges: Update to 2.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.0.
2016-10-26gnu: r-s4vectors: Update to 0.12.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.0.
2016-10-26gnu: r-dnacopy: Update to 1.48.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.48.0.
2016-10-26gnu: r-biocinstaller: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.24.0.
2016-10-26gnu: r-biocgenerics: Update to 0.20.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.20.0.
2016-10-26gnu: r-grohmm: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.8.0.
2016-10-26gnu: r-systempiper: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.8.1.
2016-10-26gnu: r-shortread: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.0.
2016-10-26gnu: r-gostats: Update to 2.40.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.40.0.
2016-10-26gnu: r-category: Update to 2.40.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-category): Update to 2.40.0.
2016-10-26gnu: r-gseabase: Update to 1.36.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.36.0.
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