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2020-03-09gnu: speedcrunch: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
2020-03-09gnu: ding: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/dictionaries.scm (ding)[home-page]: Use HTTPS.
2020-03-09gnu: plotutils: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/plotutils.scm (plotutils)[home-page]: Use HTTPS.
2020-03-09gnu: idris: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/idris.scm (idris)[home-page]: Use HTTPS.
2020-03-09gnu: xfce4-power-manager: Update to 1.7.0.Tobias Geerinckx-Rice
* gnu/packages/xfce.scm (xfce4-power-manager): Update to 1.7.0.
2020-03-09gnu: xfce4-power-manager: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/xfce.scm (xfce4-power-manager)[source]: Hard-code NAME.
2020-03-09gnu: xfburn: Update to 0.6.2.Tobias Geerinckx-Rice
* gnu/packages/xfce.scm (xfburn): Update to 0.6.2.
2020-03-09gnu: claws-mail: Update to 3.17.5.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (claws-mail): Update to 3.17.5.
2020-03-09gnu: s6: Update to 2.9.0.1.Tobias Geerinckx-Rice
* gnu/packages/skarnet.scm (s6): Update to 2.9.0.1.
2020-03-09gnu: s6-linux-init: Update to 1.0.4.0.Tobias Geerinckx-Rice
* gnu/packages/skarnet.scm (s6-linux-init): Update to 1.0.4.0.
2020-03-09gnu: Add spatialite-tools.Guillaume Le Vaillant
* gnu/packages/geo.scm (spatialite-tools): New variable.
2020-03-09gnu: Add readosm.Guillaume Le Vaillant
* gnu/packages/geo.scm (readosm): New variable.
2020-03-09gnu: spatialite-gui: Add missing input.Guillaume Le Vaillant
* gnu/packages/geo.scm (spatialite-gui)[inputs]: Add libjpeg-turbo.
2020-03-09gnu: gdal: Update to 3.0.4.Guillaume Le Vaillant
* gnu/packages/geo.scm (gdal): Update to 3.0.4.
2020-03-09gnu: proj: Update to 6.3.1.Guillaume Le Vaillant
* gnu/packages/geo.scm (proj): Update to 6.3.1.
2020-03-09gnu: Add perl-math-vecstat.Roel Janssen
* gnu/packages/perl.scm (perl-math-vecstat): New variable.
2020-03-09gnu: python-semver: Fix build.Roel Janssen
* gnu/packages/python-xyz.scm: Add python-appdirs, python-distlib, python-importlib-metadata, python-filelock, and python-six to native-inputs in order to run the test suite.
2020-03-09gnu: Fix build of python-velocyto.Roel Janssen
* gnu/packages/bioinformatics.scm (python-velocyto): Add python-joblib to native-inputs to make the test suite run succesfully.
2020-03-09gnu: Add vim-asyncrun.Efraim Flashner
* gnu/packages/vim.scm (vim-asyncrun): New variable.
2020-03-09gnu: Add nyancat.Efraim Flashner
* gnu/packages/toys.scm (nyancat): New variable.
2020-03-09gnu: Update python-statsmodels to 0.11.1.Roel Janssen
* gnu/packages/statistics.scm (python-statsmodels): Update to 0.11.1.
2020-03-09gnu: Add sycamore.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-sycamore, sbcl-sycamore): New variables.
2020-03-09gnu: emacs-sly: Update to 20200228.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20200228.
2020-03-09gnu: r-desolve: Update to 1.28.Ricardo Wurmus
* gnu/packages/cran.scm (r-desolve): Update to 1.28.
2020-03-09gnu: r-umap: Update to 0.2.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-umap): Update to 0.2.5.0. [native-inputs]: Add r-knitr.
2020-03-09gnu: r-rcppannoy: Update to 0.0.16.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.16. [native-inputs]: Remove r-knitr.
2020-03-09gnu: r-quantmod: Update to 0.4-16.Ricardo Wurmus
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-16.
2020-03-09gnu: r-vcd: Update to 1.4-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-vcd): Update to 1.4-6.
2020-03-09gnu: r-ggrepel: Update to 0.8.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.2.
2020-03-08services: cuirass: Allow passing extra command line options.Christopher Baines
This is so that the options supported by the service configuration don't have to always be changed. Generally though all options should be explicitly supported and documented, so this is mostly to facilitate experimentation. * gnu/services/cuirass.scm (<cuirass-configuration>): Add an extra-options field. (cuirass-shepherd-service): Pass the extra options to the shepherd servvices. * doc/guix.texi (Continuous Integration): Document it.
2020-03-08services: guix-data-service: Allow passing extra options.Christopher Baines
This is so that the options supported by the service configuration don't have to always be changed. Generally though all options should be explicitly supported and documented, so this is mostly to facilitate experimentation. * gnu/services/guix.scm (<guix-data-service-configuration>): Add extra-options and extra-process-jobs-options to the record type. (guix-data-service-shepherd-services): Handle these new configuration record fields. * doc/guix.texi (Guix Data Service): Document these new options.
2020-03-08gnu: guix-data-service: Update to 0.0.1-18.18eb9df.Christopher Baines
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-18.18eb9df. (inputs, native-inputs): Switch to using the Guile 3 package variants where applicable.
2020-03-09gnu: python-virtualenv: Update to 20.0.8.Jakub Kądziołka
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.8. [arguments]: Remove the now-redundant 'disable-failing-test phase. [native-inputs]: Add python-setuptools and python-setuptools-scm. [inputs]: Add python-{appdirs, distlib, filelock, six, importlib-metadata}.
2020-03-09gnu: python-xyz: Add python-filelock.Jakub Kądziołka
* gnu/packages/python-xyz.scm (python-filelock): New variable.
2020-03-09gnu: python-xyz: Add python-distlib.Jakub Kądziołka
* gnu/packages/python-xyz.scm (python-distlib): New variable.
2020-03-08gnu: ngless: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0.
2020-03-08gnu: Add jack-select.Ricardo Wurmus
* gnu/packages/music.scm (jack-select): New variable.
2020-03-08gnu: taxtastic: Update to 0.8.11.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11. [source]: Fetch from Github. [arguments]: Build with default Python; add phases 'prepare-directory, 'python37-compatibility, and update 'check phase. [propagated-inputs]: Replace Python 2 variants with Python 3 variants.
2020-03-08gnu: guile-next: Revert to 3.0.0.Ludovic Courtès
Guile 3.0.1 segfaults while building guix-system-tests.drv on and "guile3.0-guix" on x86_64-linux. * gnu/packages/guile.scm (guile-next): Revert to 3.0.0. (guile-3.0):
2020-03-08gnu: Add perl-config-inifiles.Roel Janssen
* gnu/packages/perl.scm (perl-config-inifiles): New variable.
2020-03-08gnu: Add perl-attribute-util.Roel Janssen
* gnu/packages/perl.scm (perl-attribute-util): New variable.
2020-03-08gnu: Add font-opendyslexic.Efraim Flashner
* gnu/packages/fonts.scm (font-opendyslexic): New variable. (font-open-dyslexic): Mark as deprecated package.
2020-03-08gnu: beep: Remove dependency on GCC 8.Ludovic Courtès
* gnu/packages/terminals.scm (beep)[native-inputs]: Remove.
2020-03-08gnu: beep: Update to 1.4.9.Vincent Legoll
* gnu/packages/terminals.scm (beep): Update to 1.4.9. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08services: certbot: Add server option.Jack Hill
* gnu/services/certbot.scm (certbot-configuration): Add server option. (certbot-command): Use server option. (certbot-actication): Use server option. (certbot-nginx-server-configurations): Use server option. * doc/guix.texi (Certificate Services): Document server option. Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08system: Export 'operating-system' missing fields.Brice Waegeneire
* gnu/system.scm: Export 'operating-system-firmware', 'operating-system-keyboard-layout', 'operating-system-name-service-switch', 'operating-system-pam-services', 'operating-system-setuid-programs', 'operating-system-skeletons', 'operating-system-sudoers-file', 'operating-system-swap-devices'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08gnu: guile-next: Update to 3.0.1.Ludovic Courtès
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1. Use "mirror://" URL.
2020-03-08gnu: r-robust: Update to 0.5-0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0.
2020-03-08gnu: r-rapidjsonr: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0.
2020-03-08gnu: r-atacseqqc: Update to 1.10.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3. [native-inputs]: Add r-knitr.
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