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2021-01-17gnu: sbcl-cffi: Update to 0.23.0....* gnu/packages/lisp-xyz.scm (sbcl-cffi): Update to 0.23.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Aurora
2021-01-17gnu: freebayes: Update to 1.3.3....* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.3. [source]: Add patch. Add snippet to remove vendored library. [build-system]: Switch to meson-build-system. [inputs]: Remove bamtools. Add fastahack, smithwaterman, tabixpp. [native-inputs]: Remove procps, python-2, tabixpp source, smithwaterman source, multichoose source, fsom source, filevercmp source, fastahack source, bash-tap source. Add bash-tap, grep, pkg-config, simde, vcflib. [arguments]: Drop make-flags. Don't delete 'configure phase. Delete custom 'fix-tests, 'build-tabixpp-and-vcflib, 'fix-makefiles, 'install phases. Adjust 'unpack-submodule-sources phase to changed native-inputs. Add new 'patch-source phase. Efraim Flashner
2021-01-17gnu: multichoose: Install header files....* gnu/packages/bioinformatics.scm (multichoose)[arguments]: Adjust 'install phase to also install header files. Efraim Flashner
2021-01-17gnu: filevercmp: Install header files....* gnu/packages/bioinformatics.scm (filevercmp)[arguments]: Adjust 'install phase to install header files. Efraim Flashner
2021-01-17gnu: Add simde....* gnu/packages/assembly.scm (simde): New variable. Efraim Flashner
2021-01-17gnu: rtl-433: Update to 20.11....* gnu/packages/radio.scm (rtl-433): Update to 20.11. Guillaume Le Vaillant
2021-01-17gnu: gqrx: Update to 2.14.4....* gnu/packages/radio.scm (gqrx): Update to 2.14.4. Guillaume Le Vaillant
2021-01-17gnu: abcl: Update to 1.8.0....* gnu/packages/java.scm (abcl): Update to 1.8.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Vincent Legoll
2021-01-17image: Rename "raw" image-type to "efi-raw"....* gnu/system/image.scm (raw-image-type): Rename to "efi-raw-image-type". * guix/scripts/system.scm (%default-options): Adapt accordingly. * doc/guix.texi: Ditto. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Mathieu Othacehe
2021-01-17gnu: Add buildapp....* gnu/packages/lisp.scm (buildapp): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Sharlatan Hellseher
2021-01-17gnu: gama: Update to 2.13....* gnu/packages/gps.scm (gama): Update to 2.13. Efraim Flashner
2021-01-17gnu: youtube-dl: Update to 2021.01.16....* gnu/packages/video.scm (youtube-dl): Update to 2021.01.16. Oleg Pykhalov
2021-01-16gnu: Add markets....* gnu/packages/gnome-xyz.scm (markets): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alexandros Theodotou
2021-01-16gnu: python-pep517: Update to 0.9.1....* gnu/packages/python-xyz.scm (python-pep517): Update to 0.9.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Tanguy Le Carrour
2021-01-16services: openntpd: Remove support for deprecated "-s" option....* gnu/services/networking.scm (openntpd-configuration): Remove "allow-large-adjustment?" field. (openntpd-shepherd-service): Remove use of "allow-large-adjustment?" configuration field and "-s" daemon option. * tests/networking.scm (%openntpd-conf-sample): Remove "allow-large-adjustment?" field. * doc/guix.texi (Networking Services)[openntpd-service-type]: Remove "allow-large-adjustment?" field from sample configuration. [openntpd-configuration]: Remove description of "allow-large-adjustment?" field. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Simon South
2021-01-16gnu: xfce4-whiskermenu-plugin: Update to 2.5.2....* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Update to 2.5.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2021-01-16gnu: garcon: Update to 4.16.1....* gnu/packages/xfce.scm (garcon): Update to 4.16.1. [native-inputs]: Add gobject-introspection, sorted alphabeticaly. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2021-01-16gnu: xfce4-cpufreq-plugin: Update to 1.2.3....* gnu/packages/xfce.scm (xfce4-cpufreq-plugin): Update to 1.2.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2021-01-16gnu: xfconf: Install bash completion....* gnu/packages/xfce.scm (xfconf)[arguments]: Add install-shell-completions phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2021-01-16gnu: xfwm4: Update to 4.16.1....* gnu/packages/xfce.scm (xfwm4): Update to 4.16.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2021-01-16gnu: thunar: Update to 4.16.2....* gnu/packages/xfce.scm (thunar): Update to 4.16.2. [inputs]: Add gobject-introspection. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2021-01-16gnu: mkvtoolnix: Update to 52.0.0....* gnu/packages/video.scm (mkvtoolnix): Update to 52.0.0. [inputs]: Add libdvdread to support dvd chapter. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2021-01-16gnu: diffoscope: Update to 164....* gnu/packages/diffoscope.scm (diffoscope): Update to 164. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Vincent Legoll
2021-01-16services: qemu-binfmt: 'guix-support?' defaults to #t....* gnu/services/virtualization.scm (qemu-binfmt-service-type)[guix-support?]: Change the default from #f to #t. * doc/guix.texi (Transparent Emulation with QEMU): Change the default of ‘guix-support?’ from #f to #t. Describe the implication of setting it to #f. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Stefan
2021-01-16gnu: blender: Update to 2.91.0....* gnu/packages/graphics.scm (blender): Update to 2.91.0. [inputs]: Add embree. Signed-off-by: Leo Famulari <leo@famulari.name> Christopher Lemmer Webber
2021-01-16gnu: Add embree....* gnu/packages/graphics.scm (embree): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Christopher Lemmer Webber
2021-01-16Revert "gnu: llvm: Update to 11.0.1."...This reverts commit 9b415c0b36c885e7899c45617a8c4e64118a6379, which reportedly breaks[0] rust@1.47.0, rust-1.48.0 and rust-1.49.0. [0]: http://issues.guix.gnu.org/45909 Tobias Geerinckx-Rice
2021-01-16gnu: gnome-font-viewer: Fix thumbnail generation....Previously, thumbnail generation failed, as the gnome-thumbnail-font command couldn't be found. Using an absolute filename in the .thumbnailer file fixes this. Cached failures within .cache/thumbnails/fail/ or similar may need removing before the effect of this change can be seen. * gnu/packages/gnome.scm (gnome-font-viewer)[arguments]: Add patch-thumbnailer phase. Christopher Baines
2021-01-16gnu: ruby-method-source: Remove unnecessary dependency on git....* gnu/packages/ruby.scm (ruby-method-source)[arguments]: Patch Rakefile to use find rather than git. [native-inputs]: Remove git. Christopher Baines
2021-01-16gnu: Add lrzsz....* gnu/packages/admin.scm (lrzsz): New variable. Danny Milosavljevic
2021-01-15gnu: emacs-dired-hacks: Update to 0.0.1-3.d1a2bda....* gnu/packages/emacs-xyz.scm (emacs-dired-hacks): Update to 0.0.1-3.d1a2bda. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Michael Rohleder
2021-01-15gnu: emacs-calibredb: Patch paths to calibre programs....* gnu/packages/emacs-xyz.scm (emacs-calibredb): Patch paths to calibre programs. [arguments]: Add phase patch-paths. [inputs]: Add calibre. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Michael Rohleder
2021-01-15gnu: Add emacs-crdt....* gnu/packages/emacs-xyz.scm (emacs-crdt): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Morgan Smith
2021-01-15gnu: emacs-helm-sly: Update to 0.6.0....* gnu/packages/emacs-xyz.scm (emacs-helm-sly): Update to 0.6.0. Pierre Neidhardt
2021-01-15gnu: sbcl-postmodern: Update to 1.32.6....* gnu/packages/lisp-xyz.scm (sbcl-postmodern): Update to 1.32.6. [inputs]: Add cl-base64, cl-unicode, ironclad, local-time and uax-15. [arguments]: Add cl-postgres, s-sql and simple-date to 'asd-systems'. (ecl-postmodern)[arguments]: Add cl-postgres, s-sql and simple-date to 'asd-systems'. Update the 'fix-build' phase. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Sharlatan Hellseher
2021-01-14gnu: facter: Update to 4.0.48....* gnu/packages/admin.scm (facter): Update to 4.0.48. Tobias Geerinckx-Rice
2021-01-14gnu: kyotocabinet: Update to 1.2.79....* gnu/packages/databases.scm (kyotocabinet): Update to 1.2.79. Tobias Geerinckx-Rice
2021-01-14gnu: gptfdisk: Update to 1.0.6....* gnu/packages/disk.scm (gptfdisk): Update to 1.0.6. Tobias Geerinckx-Rice
2021-01-14gnu: busybox: Update to 1.32.1....* gnu/packages/busybox.scm (busybox): Update to 1.32.1. Tobias Geerinckx-Rice
2021-01-14services: hurd-vm: Respect hurd-vm-configuration's disk-size....This is a follow-up to commit 859b362f81598830d7ff276b96a8724aee3c4db7. * gnu/services/virtualization.scm (hurd-vm-disk-image): Use diks-size from config to set image's size. Jan (janneke) Nieuwenhuizen
2021-01-14gnu: vcflib: Update to 1.0.2....* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.2. [source]: Download using git-fetch. Remove patch. Update snippet to use packaged libraries. [build-system]: Switch to cmake-build-system. [inputs]: Add bzip2. [native-inputs]: Add package-source of fsom. [arguments]: Delete custom 'set-flags, 'install phases. Don't delete 'configure phase. Adjust 'unpack-submodule-sources phase. * gnu/packages/patches/vcflib-use-shared-libraries.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2021-01-14gnu: sambamba Update to 0.8.0....* gnu/packages/bioinformatics.scm (sambamba): Update to 0.8.0. [source, home-page]: Update to new upstream URI. [arguments]: Shorten 'fix-ldc-version phase. Remove 'place-biod-and-undead phase. Update 'unbundle-prerequisites and 'insatll phases. [native-inputs]: Remove rdmd, biod. Move ldc ... [inputs]: ... to here. Add zlib. (htslib-for-sambamba): Remove variable. Efraim Flashner
2021-01-14gnu: gemma: Enable tests....* gnu/packages/bioinformatics.scm (gemma)[source]: Add snippet to remove bundled sources. [native-inputs]: Add catch-framework2-1, perl, shunit2, which. [arguments]: Don't disable tests. Override 'check phase. Efraim Flashner
2021-01-14gnu: Add shunit2....* gnu/packages/check.scm (shunit2): New variable. Efraim Flashner
2021-01-14gnu: gemma: Add Texinfo markup....* gnu/packages/bioinformatics.scm (gemma)[description]: Use Texinfo markup. Efraim Flashner
2021-01-14gnu: gemma: Update to 0.98.3....* gnu/packages/bioinformatics.scm (gemma): Update to 0.98.3. [source, home-page]: Update to new upstream URI. [inputs]: Remove eigen, gfortran, lapack. [arguments]: Remove make-flags. Remove 'find-eigen phase. Rename 'bin-mkdir phase to 'prepare-build and substitute openblas include directory. Efraim Flashner
2021-01-14gnu: efi-analyzer: Rename with a hyphen instead of an underscore....* gnu/packages/efi.scm (efi_analyzer): Rename to... (efi-analyzer): ... this. (efi_analyzer): Redefine as a deprecated alias. Ludovic Courtès
2021-01-14gnu: xfce: Update to 4.16.0....* gnu/packages/xfce.scm (libxfce4util): Update to 4.16.0. (xfconf): Update to 4.16.0. [arguments]: Add phase to disable hanging test. (libxfce4ui): Update to 4.16.0. [inputs]: Remove unneeded gtk+-2. (exo): Update to 4.16.0. [arguments]: Remove wrap-exo-compose-mail phase. [inputs]: Remove unneeded gtk+-2 and perl-uri. (garcon): Update to 0.8.0. [inputs]: Remove unneeded gtk+-2. (tumbler): Update to 4.16.0. (xfce4-panel): Update to 4.16.0. (xfce4-appfinder): Update to 4.16.0. (xfce4-session): Update to 4.16.0. (xfce4-settings): Update to 4.16.0. [inputs]: Add python. (thunar): Update to 4.16.0. (thunar-volman): Update to 4.16.0. (xfwm4): Update to 4.16.0. (xfdesktop): Update to 4.16.0. (xfce4-power-manager): Update to 4.16.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2021-01-14gnu: qemu: Fix ioctl(…, SIOCGIFCONF, …) for emulated 64 bit architectures....* gnu/packages/virtualization.scm (qemu): Add a snippet to fix a bug in the do_ioctl_ifconf() function of qemu to make ioctl(…, SIOCGIFCONF, …) work for emulated 64 bit architectures. The sizeof(struct ifreq) is 40 for 64 bit and 32 for 32 bit architectures. This structure contains a union of other structures, of which struct ifmap is the biggest for 64 bit architectures. Calling ioctl(…, SIOCGIFCONF, …) fills a struct sockaddr of that union, and do_ioctl_ifconf() only considered that struct sockaddr for the size of the union, which has the same size as struct ifmap on 32 bit architectures. So do_ioctl_ifconf() assumed a wrong size of 32 for struct ifreq instead of the correct size of 40 on 64 bit architectures. The fix makes do_ioctl_ifconf() handle struct ifmap as the biggest part of the union, treating struct ifreq with the correct size. This fixes (@ (guix build syscalls) network-interface-names) when used in emulated 64 bit architectures. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Stefan
2021-01-14gnu: Add lv2-speech-denoiser....* gnu/packages/audio.scm (lv2-speech-denoiser): New variable. Ricardo Wurmus