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2017-05-22gnu: Add classpath-jamvm-wrappers....* gnu/packages/java.scm (classpath-jamvm-wrappers): New variable. Ricardo Wurmus
2017-05-22gnu: Add jamvm-bootstrap....* gnu/packages/java.scm (jamvm-bootstrap): New variable. Ricardo Wurmus
2017-05-22gnu: Add classpath....* gnu/packages/java.scm (classpath): New variable. Ricardo Wurmus
2017-05-22gnu: Add ecj-javac-wrapper....* gnu/packages/java.scm (ecj-javac-wrapper): New variable. Ricardo Wurmus
2017-05-22gnu: Add ecj-bootstrap....* gnu/packages/java.scm (ecj-bootstrap): New variable. Ricardo Wurmus
2017-05-22gnu: Add ant-bootstrap....* gnu/packages/java.scm (ant-bootstrap): New variable. Ricardo Wurmus
2017-05-22gnu: Add sablevm....* gnu/packages/java.scm (sablevm): New variable. Ricardo Wurmus
2017-05-22gnu: Add sablevm-classpath....* gnu/packages/java.scm (sablevm-classpath): New variable. Ricardo Wurmus
2017-05-22gnu: Add jikes....* gnu/packages/java.scm (jikes): New variable. Ricardo Wurmus
2017-05-22gnu: Add r-edaseq....* gnu/packages/bioinformatics.scm (r-edaseq): New variable. Ricardo Wurmus
2017-05-22gnu: Add r-deseq....* gnu/packages/bioinformatics.scm (r-deseq): New variable. Ricardo Wurmus
2017-05-22gnu: Add r-aroma-light....* gnu/packages/bioinformatics.scm (r-aroma-light): New variable. Ricardo Wurmus
2017-05-22Merge branch 'version-0.13.0'Marius Bakke
2017-05-22gnu: vte-ng: Update to 0.48.3.a....* gnu/packages/gnome.scm (vte-ng): Update to 0.48.3.a. Marius Bakke
2017-05-22gnu: gexiv2: Update to 0.10.6....* gnu/packages/gnome.scm (gexiv2): Update to 0.10.6. Marius Bakke
2017-05-22gnu: dconf-editor: Update to 3.22.3....* gnu/packages/gnome.scm (dconf-editor): Update to 3.22.3. Marius Bakke
2017-05-22gnu: aisleriot: Update to 3.22.2....* gnu/packages/gnome.scm (aisleriot): Update to 3.22.2. Marius Bakke
2017-05-22gnu: vte: Update to 0.48.3....* gnu/packages/gnome.scm (vte): Update to 0.48.3. Marius Bakke
2017-05-22gnu: fraggenescan: Update to 1.30....* gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30. [arguments]: Update patching of paths, install procedure. Add new test case. Ben Woodcroft
2017-05-22gnu: roary: Update to 3.8.2....* gnu/packages/bioinformatics.scm (roary): Update to 3.8.2. Ben Woodcroft
2017-05-22gnu: taxtastic: Update to 0.6.4....* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4. [source]: Use PyPI URI. Ben Woodcroft
2017-05-22gnu: r-mutationalpatterns: Update to 1.2.1....* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.2.1. Roel Janssen
2017-05-21bootloader: extlinux: Add a warning message on top of generated conf file....* gnu/bootloader/extlinux.scm (extlinux-configuration-file): Warn users about the fact that the configuration file is automatically generated. Mathieu Othacehe
2017-05-21gnu: v4l-utils: Update to 1.12.5....* gnu/packages/video.scm (v4l-utils): Update to 1.12.5. Marius Bakke
2017-05-21gnu: x265: Update to 2.4....* gnu/packages/video.scm (x265): Update to 2.4. Marius Bakke
2017-05-21gnu: vlc: Update to 2.2.5.1....* gnu/packages/video.scm (vlc): Update to 2.2.5.1. [source]: Remove obsolete snippet. Marius Bakke
2017-05-21gnu: libaacs: Update to 0.9.0....* gnu/packages/video.scm (libaacs): Update to 0.9.0. Marius Bakke
2017-05-21gnu: diamond: Update to 0.9.0....* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.0. [license]: Change to AGPL3+. Ben Woodcroft
2017-05-21gnu: guix: Update to a6d728b.Ludovic Courtès
2017-05-21gnu: guix: Update to 0.13.0.Ludovic Courtès
2017-05-21gnu: fasttree: Update to 2.1.10....* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10. Ben Woodcroft
2017-05-21gnu: python-biom-format: Update to 2.1.6....* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6. [propagated-inputs]: Add python-pandas. Ben Woodcroft
2017-05-21gnu: python-future: Update to 0.16.0....* gnu/packages/python.scm (python-future): Update to 0.16.0. Ben Woodcroft
2017-05-21gnu: ccid: Update to 1.4.27....* gnu/packages/security-token.scm (ccid): Update to 1.4.27. Marius Bakke
2017-05-21gnu: fio: Update to 2.20....* gnu/packages/benchmark.scm (fio): Update to 2.20. [arguments]<#:phases>: Drop removed script from 'move-outputs' phase. Marius Bakke
2017-05-21gnu: nano: Update to 2.8.4....* gnu/packages/nano.scm (nano): Update to 2.8.4. Marius Bakke
2017-05-21gnu: vim: Update to 8.0.0600....* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600. Marius Bakke
2017-05-21gnu: vim-full: Disable failing test....* gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution. Marius Bakke
2017-05-21tests: ssh: Use 'guile2.0-ssh'....Fixes a regression introduced in 4d8806c3d662c74e6d48d0f0d6ce423fce9a3a08. * gnu/tests/ssh.scm (run-ssh-test): Use GUILE2.0-SSH instead of GUILE-SSH. Ludovic Courtès
2017-05-21gnu: linux-libre: Update to 4.11.2....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2. (%linux-libre-hash): Update hash. Mark H Weaver
2017-05-21gnu: linux-libre: Remove CONFIG_SMC from x86 kernel configurations....This removes support for the "shared memory communications over RDMA" (SMC-R) networking protocol, which was added in 4.11 without the knowledge of the RDMA maintainers, and which is thought to contain significant security flaws. For details, see <https://lwn.net/Articles/723081> and <https://lwn.net/Articles/723070>. * gnu/packages/aux-files/linux-libre/4.11-x86_64.conf, gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC. 723# 0001-gnu-libevent-2.0-Add-fix-from-upstream.patch Mark H Weaver
2017-05-21gnu: linux-libre@4.9: Update to 4.9.29....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29. Mark H Weaver
2017-05-21gnu: linux-libre@4.4: Update to 4.4.69....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.69. Mark H Weaver
2017-05-21gnu: unionfs-fuse-static: Remove 'unionfsctl' executable....This avoids pulling in glibc & co. Fixes a regression introduced in 2f861edf5cf5118ad560737343312c9a5efe5b2f (the 'unionfsctl' executable did not exist in unionfs-fuse 0.26). * gnu/packages/linux.scm (unionfs-fuse/static)[arguments] <post-install>: Remove 'unionfsctl' binary. Ludovic Courtès
2017-05-21vm: Increase default disk size to account for ESP partition....Fixes a test regression introduced by ecf5d5376979fadd971559367bf553df89fcc62b. * gnu/system/vm.scm (system-qemu-image/shared-store-script): 30MiB -> 70MiB. Marius Bakke
2017-05-21gnu: unionfs-fuse-static: Remove 'unionfsctl' executable....This avoids pulling in glibc & co. Fixes a regression introduced in 2f861edf5cf5118ad560737343312c9a5efe5b2f (the 'unionfsctl' executable did not exist in unionfs-fuse 0.26). * gnu/packages/linux.scm (unionfs-fuse/static)[arguments] <post-install>: Remove 'unionfsctl' binary. Ludovic Courtès
2017-05-21vm: Increase default disk size to account for ESP partition....Fixes a test regression introduced by ecf5d5376979fadd971559367bf553df89fcc62b. * gnu/system/vm.scm (system-qemu-image/shared-store-script): 30MiB -> 70MiB. Marius Bakke
2017-05-20gnu: ghostscript: Add TODO comment about bundled jbig2dec....* gnu/packages/ghostscript.scm (ghostscript): Add comment. Leo Famulari
2017-05-20gnu: jbig2dec: Fix CVE-2017-{7885,7975,7976}....* gnu/packages/patches/jbig2dec-CVE-2017-7885.patch, gnu/packages/patches/jbig2dec-CVE-2017-7975.patch, gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (jbig2dec)[source]: Use them. Leo Famulari
2017-05-20gnu: pcsc-lite: Update to 1.8.21....* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.21. Marius Bakke
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