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2024-02-12gnu: nebula: Use G-expressions.Sharlatan Hellseher
* gnu/packages/networking.scm (nebula) [arguments]: Use G-expressions. <#:phases>: Set version during build time. Change-Id: I0cda81f952e3543ac2a01d5d917df4944ac82950
2024-02-12gnu: nebula: Update to 1.8.2.Alexey Abramov
* gnu/packages/networking.scm (nebula): Update to 1.8.2. [arguments]: <#:go>: Use go-1.20. [inputs]: Remove go-github-com-imdario-mergo. Add go-dario-cat-mergo. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Ifab21622036f1d09dc61c687142f21515dd4f688
2024-02-12gnu: Add nebula.Dominic Martinez
* gnu/packages/networking.scm (nebula): New variable. Co-authored-by: Alexey Abramov <levenson@mmer.org> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I3b38d3e6255efd18d88b1762db7bf5c8b6f46b1c
2024-02-12gnu: Add go-dario-cat-mergo.Alexey Abramov
This is a new version of go-github-com-imdario-mergo. It was renamed and now used as dario.cat/mergo in tests and other places. * gnu/packages/golang.scm (go-dario-cat-mergo): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I10cf6c962441535493889820543d29a9a9b20e98
2024-02-12gnu: go-github-com-stathat-go: Move to golang-xyz.Sharlatan Hellseher
* gnu/packages/syncthing.scm (go-github-com-stathat-go): Move from here ... * gnu/packages/golang-xyz.scm: ... to here. Change-Id: I804043f512b60665233fba61da3f2225042d8d65
2024-02-12gnu: go-github-com-rcrowley-go-metrics: Move to golang-xyz.Sharlatan Hellseher
* gnu/packages/syncthing.scm (go-github-com-rcrowley-go-metrics): Move from here ... * gnu/packages/golang-xyz.scm: ... to here. Change-Id: Id153e4b8295c1430077941c5e4ee854ef28a56fa
2024-02-12gnu: go-github-com-prometheus-client-model: Move to golang-xyz.Sharlatan Hellseher
* gnu/packages/syncthing.scm (go-github-com-prometheus-client-model): Move from here * gnu/packages/golang-xyz.scm: ... to here. * gnu/packages/golang.scm: Add (gnu packages golang-xyz) module. * gnu/packages/ipfs.scm: As above. * gnu/packages/networking.scm: As above. Change-Id: Ibf79be7fd49acc8fc88bf2411a4d7d89b44713d0
2024-02-12gnu: Add go-github-com-skip2-go-qrcode.Dominic Martinez
* gnu/packages/golang-xyz.scm (go-github-com-skip2-go-qrcode): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I3510982cdbc7b540281c0b0f074c1cb140ce249b
2024-02-12gnu: Add go-github-com-songgao-water.Dominic Martinez
* gnu/packages/golang-xyz.scm (go-github-com-songgao-water): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: If08b2994f932b604d2d537e7d3d02e90934542fb
2024-02-12gnu: Add go-github-com-nbrownus-go-metrics-prometheus.Dominic Martinez
* gnu/packages/golang-xyz.scm (go-github-com-nbrownus-go-metrics-prometheus): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I1fbaa3a54c761bbdb440ca211d76f6c43b4434ce
2024-02-12gnu: Add go-github-com-miekg-dns.Dominic Martinez
* gnu/packages/golang-xyz.scm (go-github-com-miekg-dns): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I095c6a7a709614d2cbd1feb9488dfee47a35da57
2024-02-12gnu: Add go-github-com-cyberdelia-go-metrics-graphite.Dominic Martinez
* gnu/packages/golang-xyz.scm (go-github-com-cyberdelia-go-metrics-graphite): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Id77785387b23a8317b21c2a7f7114f1c1aa6328b
2024-02-12gnu: Add go-github-com-armon-go-radix.Dominic Martinez
* gnu/packages/golang-xyz.scm (go-github-com-armon-go-radix): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Iee5b73c53cca088a05563377b691d607cc745b0e
2024-02-12gnu: Add go-github-com-anmitsu-go-shlex.Dominic Martinez
* gnu/packages/golang-xyz.scm (go-github-com-anmitsu-go-shlex): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I75f63d866fb8c6cd8e80ac48fc207236d839a028
2024-02-12gnu: mutter: Disable one test when building for i686-linux.Ricardo Wurmus
This test no longer fails in future versions, so this is only a temporary workaround. * gnu/packages/gnome.scm (mutter)[arguments]: Conditionally disable the activation test on i686-linux. Change-Id: Ic8552355971b9926b7f72c228edf881a1c0cea1e
2024-02-12gnu: debootstrap: use trisquel-keyring.Denis 'GNUtoo' Carikli
* gnu/packages/debian.scm (debootstrap): [arguments]: In 'patch-source' phase, use trisquel-keyring. [inputs]: Add trisquel-keyring, zstd. Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org> Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Change-Id: I43d5543db4374b373dac65f65cfcef6a3df3b5bf
2024-02-12gnu: Add trisquel-keyring.Denis 'GNUtoo' Carikli
* gnu/packages/debian.scm (trisquel-keyring): New variable. Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org> Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2024-02-12gnu: rrdtool: Remove unneeded input.Efraim Flashner
* gnu/packages/rrdtool.scm (rrdtool)[inputs]: Remove gtk+-2. Change-Id: Iee01e038f1361e763ea0df62625fb06b65ce45d5
2024-02-12gnu: ruby-3.2: Update to 3.2.3.Remco van 't Veer
Fixes CVE-2023-36617 (ReDoS vulnerability in URI). * gnu/packages/ruby.scm (ruby-3.2): Update to 3.2.3. Signed-off-by: Andreas Enge <andreas@enge.fr> Change-Id: I20d92f4b6e566466e5af087712e91d0ecc1735da
2024-02-12gnu: vpn-slice: Include required inputs "iproute" and "iptables".Allan Adair
vpn-slice expects commands "ip" and "iptables" to be found according to FHS paths. * gnu/packages/vpn.scm (vpn-slice)[arguments]: Include inputs "iproute" and "iptables" and patch "vpn_slice/linux.py" to use correct locations in the store. Change-Id: Ia06e2bb99f060108cc0758e89174294bcbb2848d Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-02-11gnu: guile-png: Update to 0.7.2.Artyom V. Poptsov
* gnu/packages/guile-xyz.scm (guile-png): Update to 0.7.2. Change-Id: Ic84b1472bdfdf47db26e0954b6135054290e49b0 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-11gnu: abjad-ext-rmakers: Simplify package.Sharlatan Hellseher
* gnu/packages/music.scm (abjad-ext-rmakers) [build-system]: Swap to pyproject-build-system. [arguments]: Use standard 'check phase. Change-Id: Ic2591fbe35d7479e120048d334cc202a5e1c9243
2024-02-11gnu: abjad-ext-rmakers: Fix build.Sharlatan Hellseher
* gnu/packages/music.scm (abjad-ext-rmakers) [native-inputs]: Add python-sphinx-autodoc-typehints. Change-Id: Ide0e00b3c12180d341f1ed8052fb4e10a6504499
2024-02-11gnu: abjad-ext-nauert: Simplify package.Sharlatan Hellseher
* gnu/packages/music.scm (abjad-ext-nauert) [build-system]: Swap to pyproject-build-system. [arguments]: Use standard 'check phase. Change-Id: Ica32dd692964d200a81628e82a8333656dc10170
2024-02-11gnu: abjad-ext-nauert: Fix build.Sharlatan Hellseher
* gnu/packages/music.scm (abjad-ext-nauert) [native-inputs]: Add python-sphinx-autodoc-typehints. Change-Id: Iec9dcbf1127ef7dc7b3bcd5a4be9eada51424f4a
2024-02-11gnu: python-pytest-socket: Simplify package, enable tests.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-socket) [build-system]: Swap to pyproject-build-system. [arguments] <#:test-flags>: Disable tests requiring network access. <#:phases>: Use standard phases. Change-Id: Ib7fe0b3dab4e269c00856a10b8ca23acc8c8e180
2024-02-11gnu: python-pyinstrument: Enable tests.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pyinstrument) [build-system]: Swap to pyproject-build-system. [native-inputs]: Add python-greenlet. Change-Id: I1cd0c3e906fbbdc561e66bae9fe35333f61801cf
2024-02-11gnu: python-pyinstrument: Update to 4.6.2.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pyinstrument): Update to 4.6.2. Change-Id: I28e147272f273c04f7221f6d4f70677aee9a3747
2024-02-11gnu: python-pytest-csv: Simplify package.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-csv) [build-system]: Swap to pyproejct-build-system. [arguments]: Use standard 'check phase. Change-Id: Iae04747b117bf5b5f9fb3c8b57cd40b8822edd77
2024-02-11gnu: python-beartype: Simplify package.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-beartype) [build-system]: Swap to pyproject-build-system. [arguments]: Use standard 'check phase and <#:test-flags>. Change-Id: I372c5be3b142f0e25d15fd2bac20fc9cd4d8030c
2024-02-11gnu: Add python-pandas-vet.Troy Figiel
* gnu/packages/python-xyz.scm (python-pandas-vet): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-11gnu: google-highway: Fix tests on i686-linux.Ricardo Wurmus
The tests are supposed to be skipped when there are problems with excess precision. * gnu/packages/cpp.scm (google-highway)[arguments]: Modify phases when building for i686-linux to conditionally patch the tests. Change-Id: I6381a8c9f65196fd1d7d4e4130d784863b634df5
2024-02-11gnu: Add binsec.Sören Tempel
* gnu/packages/ocaml.scm (binsec): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> Change-Id: Ifc57720f97f9ffa8c3558e3cd2d741cdbf73ee3a
2024-02-11gnu: Add ocaml-grain-dypgen.Sören Tempel
* gnu/packages/ocaml.scm (ocaml-grain-dypgen): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> Change-Id: I9804cb17863c112d57f0f93b414e568707dae88d
2024-02-11gnu: Add ocaml-toml.Sören Tempel
* gnu/packages/ocaml.scm (ocaml-toml): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> Change-Id: Ia3ec7d0261cd6950f1a73641fc65b3ef7ce98f24
2024-02-11gnu: Add ocaml-iso8601Sören Tempel
* gnu/packages/ocaml.scm (ocaml-iso8601): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu> Change-Id: I9463d6f6e3f8ffe43a0cfb1c95edea42fc770323
2024-02-11gnu: r-bionero: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.1. Change-Id: I26b6c35d8966744bbcb79d98328c9734360f04f3
2024-02-11gnu: r-biocset: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.16.1. Change-Id: Ib758189b9439ec822edb2e85d261b4ccd8618609
2024-02-11gnu: r-bgx: Update to 1.68.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.68.3. Change-Id: I8aa747dd0a725f84dca1441693ce573a4567f70c
2024-02-11gnu: r-gofuncr: Update to 1.22.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.22.2. Change-Id: Iba4be0c63d792caddcea69ee77aa94ce6869c1d2
2024-02-11gnu: r-glmgampoi: Update to 1.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.14.2. Change-Id: Id7265b49246e75d23086dc159da9b4f69a756a7d
2024-02-11gnu: r-trajectoryutils: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.10.1. Change-Id: I18a94851cd139951c2987054c22f01809d2479b3
2024-02-11gnu: r-rcas: Update to 1.28.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.28.3. [propagated-inputs]: Remove r-ggseqlogo and pandoc; add r-seqlogo. Change-Id: I8be7d8fc4278c8ec2db6932935f70292a4f47049
2024-02-11gnu: r-genomeinfodb: Update to 1.38.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.6. Change-Id: I57a53d4a73e9b4ce36d97092dab0789d6509484f
2024-02-11gnu: r-dittoseq: Update to 1.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.14.2. Change-Id: I8930f72b47ff92b3b798d9a45fc0598bec1ba53e
2024-02-11gnu: r-bsgenome: Update to 1.70.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.70.2. Change-Id: I45ba28279e0b843bcd635c2e30fb696e85195ce7
2024-02-11gnu: r-animalcules: Update to 1.18.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.18.3. Change-Id: I4f8d5897af796afbce269748c6a5676db72e4baf
2024-02-11gnu: r-curatedtcgadata: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.24.1. Change-Id: I42ae64544b53d6ddd72b948af4093ef4dd31a9c6
2024-02-11gnu: r-rhdf5lib: Update to 1.24.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.2. [propagated-inputs]: Remove r-biocstyle and r-stringr. [native-inputs]: Remove r-rmarkdown. Change-Id: I76b1601397bc69651c0b788404c6b0c67d830830
2024-02-11gnu: parallel: Update to 20240122.Andy Tai
* gnu/packages/parallel.scm (parallel): Update to 20240122. Change-Id: I4e416cbad5b6f4267a9aab7996c9156a861e3ad1 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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