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2018-04-28gnu: star: Update to 2.6.0a.Roel Janssen
* gnu/packages/bioinformatics.scm (star): Update to 2.6.0a.
2018-04-28gnu: multiqc: Update to 1.5.Roel Janssen
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.5.
2018-04-28gnu: express: Link with shared protobuf library.Roel Janssen
* gnu/packages/bioinformatics.scm (express): Link with shared protobuf library.
2018-04-28gnu: Add r-codedepends.Ricardo Wurmus
* gnu/packages/cran.scm (r-codedepends): New variable.
2018-04-28gnu: bamtools: Update to 2.5.1.Roel Janssen
* gnu/packages/bioinformatics.scm (bamtools): Update to 2.5.1.
2018-04-28gnu: taxtastic: Update to 0.8.5.Roel Janssen
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.5.
2018-04-28gnu: nnn: Update to 1.7.Roel Janssen
* gnu/packages/admin.scm (nnn): Update to 1.7.
2018-04-27gnu: libstaroffice: Update to 0.0.6.Tobias Geerinckx-Rice
* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.6.
2018-04-27gnu: perl-multidimensional: Update to 0.014.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-multidimensional): Update to 0.014.
2018-04-27gnu: perl-bareword-filehandles: Update to 0.006.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-bareword-filehandles): Update to 0.006.
2018-04-27gnu: vsearch: Update to 2.8.0.Ben Woodcroft
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.8.0.
2018-04-27gnu: diamond: Update to 0.9.21.Ben Woodcroft
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.21.
2018-04-27gnu: emacs-websocket: Update to 1.10.Ricardo Wurmus
* gnu/packages/emacs.scm (emacs-websocket): Update to 1.10. [source]: Fetch from git.
2018-04-27gnu: r-robustbase: Update to 0.93-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-0.
2018-04-27gnu: r-r-oo: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-oo): Update to 1.22.0.
2018-04-27gnu: r-foreign: Update to 0.8-70.Ricardo Wurmus
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-70.
2018-04-27gnu: r-metap: Update to 0.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-metap): Update to 0.9.
2018-04-27gnu: r-pillar: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-pillar): Update to 1.2.2.
2018-04-27gnu: emacs-slack: Update to 0-4.d903954.Ricardo Wurmus
* gnu/packages/emacs.scm (emacs-slack): Update to 0-4.d903954.
2018-04-27gnu: thefuck: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (thefuck)[arguments]: Substitute INVOKE for SYSTEM* and end phase with explicit #t.
2018-04-27gnu: thefuck: Update to 3.26.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (thefuck): Update to 3.26.
2018-04-27gnu: infamous-plugins: Update to 0.2.04.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (infamous-plugins): Update to 0.2.04.
2018-04-27gnu: infamous-plugins: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (infamous-plugins)[home-page]: Use HTTPS.
2018-04-27gnu: drumstick: Update to 1.1.1.Tobias Geerinckx-Rice
* gnu/packages/music.scm (drumstick): Update to 1.1.1. [inputs]: Remove fluidsynth.
2018-04-27gnu: mpd: Update to 0.20.19.Tobias Geerinckx-Rice
* gnu/packages/mpd.scm (mpd): Update to 0.20.19.
2018-04-27gnu: tuxguitar: Update to 1.5.Tobias Geerinckx-Rice
* gnu/packages/music.scm (tuxguitar): Update to 1.5.
2018-04-27gnu: tuxguitar: Update home page.Tobias Geerinckx-Rice
The tuxguitar.pw domain is infested with squatters. * gnu/packages/music.scm (tuxguitar)[home-page]: Update.
2018-04-27gnu: perl-clone: Update to 0.39.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-clone): Update to 0.39.
2018-04-27gnu: perl-strictures@2: Update to 2.000004.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-strictures-2): Update to 2.000004.
2018-04-26gnu: ranger: Fix description and tests.Eric Bavier
* gnu/packages/disk.scm (ranger)[arguments]: Replace '#:phases' with '#:test-target'. [description]: Remove texinfo markup. 'VI' -> 'Vi'.
2018-04-26gnu: Add Ranger.Eric Bavier
* gnu/packages/disk.scm (ranger): New variable.
2018-04-26gnu: mumps: Update to 5.1.2.Eric Bavier
* gnu/packages/maths.scm (mumps): Update to 5.1.2.
2018-04-26gnu: scotch: Update to 6.0.5a.Eric Bavier
* gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files. * gnu/packages/patches/scotch-build-parallelism.patch, gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/maths.scm (scotch): Update to 6.0.5a. [source](patches): Adjust accordingly.
2018-04-27gnu: darktable: Update to 2.4.3.Tobias Geerinckx-Rice
* gnu/packages/photo.scm (darktable): Update to 2.4.3.
2018-04-27gnu: quassel: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (quassel)[home-page]: Use HTTPS.
2018-04-27gnu: quassel: Update to 0.12.5.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (quassel): Update to 0.12.5. [source]: Remove patch. * gnu/packages/patches/quassel-fix-tls-check.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-04-27gnu: libetonyek: Update to 0.1.8.Tobias Geerinckx-Rice
gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.8.
2018-04-27gnu: cpuid: Update to 20180419.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (cpuid): Update to 20180419.
2018-04-27gnu: pcmanfm: Update to 1.3.0.Tobias Geerinckx-Rice
* gnu/packages/lxde.scm (pcmanfm): Update to 1.3.0. [source]: Remove patch. * gnu/packages/patches/pcmanfm-CVE-2017-8934.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-04-27gnu: libfm: Update to 1.3.0.Tobias Geerinckx-Rice
* gnu/packages/lxde.scm (libfm): Update to 1.3.0.
2018-04-27gnu: perl-log-any-adapter-log4perl: Update to 0.09.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-log-any-adapter-log4perl): Update to 0.09. [source]: Update maintainer URI.
2018-04-27gnu: perl-safe-isa: Update to 1.000010.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-safe-isa): Update to 1.000010.
2018-04-27gnu: perl-sub-quote: Update to 2.005001.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-sub-quote): Update to 2.005001.
2018-04-27gnu: perl-capture-tiny: Update to 0.48.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-capture-tiny): Update to 0.48.
2018-04-27gnu: perl-b-hooks-endofscope: Update to 0.24.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-b-hooks-endofscope): Update to 0.24.
2018-04-27gnu: perl-file-sharedir-install: Update to 0.13.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.13.
2018-04-27gnu: perl-test-notabs: Update to 2.02.Tobias Geerinckx-Rice
* gnu/packages/perl-check.scm (perl-test-notabs): Update to 2.02.
2018-04-27gnu: python-simplejson: Update to 3.14.0.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-simplejson): Update to 3.14.0.
2018-04-27gnu: python2-ndg-httpsclient: Fix build.Tobias Geerinckx-Rice
This might be a follow-up to a39cc016329f1f490ac7629fa81c9b686e7b0f4e from 2016, which would be neat. * gnu/packages/python-web.scm (python2-ndg-httpsclient)[arguments]: Use SUBSTITUTE-KEYWORD-ARGUMENTS to still skip tests.
2018-04-26gnu: paperkey: Update to 1.5.Christopher Lemmer Webber
* gnu/packages/gnupg.scm (paperkey): Update to 1.5.
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