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2018-11-18gnu: python-pytest-localserver: Fix test suite.Efraim Flashner
* gnu/packages/check.scm (python-pytest-localserver): Replace custom 'check phase.
2018-11-18gnu: ccl: Include x86-headers and remove missing "contrib" folder.Pierre Neidhardt
* gnu/packages/lisp.scm (ccl): Include x86-headers and remove missing "contrib" folder.
2018-11-18gnu: libgtextutils: Re-instate custom bootstrap phase.Efraim Flashner
The source lacks a standard bootstrap script so the bootstrap phase is skipped otherwise. * gnu/packages/textutils.smc (libgtextutils)[arguments]: Replace 'bootstrap phase with upstream's bootstrap phase.
2018-11-17gnu: mesa: Stay on RTTI-less LLVM.Marius Bakke
* gnu/packages/llvm.scm (llvm-without-rtti): New public variable. * gnu/packages/gl.scm (mesa)[inputs]: Use that instead of LLVM.
2018-11-17gnu: nss: Make tests deterministic.Ludovic Courtès
Tests would fail once certificates had expired, along these lines: chains.sh: Verifying certificate(s) PayPalEE.cert with flags -d AllDB -pp -o OID.2.16.840.1.114412.1.1 vfychain -d AllDB -pp -vv -o OID.2.16.840.1.114412.1.1 /tmp/guix-build-nss-3.39.drv-0/nss-3.39/nss/tests/libpkix/certs/PayPalEE.cert Chain is bad! PROBLEM WITH THE CERT CHAIN: CERT 0. PayPalEE : ERROR -8181: Peer's Certificate has expired. Returned value is 1, expected result is pass Using 'faketime' allows us to get deterministic results. * gnu/packages/gnuzilla.scm (nss)[arguments]: In 'check' phase, run 'all.sh' under 'faketime'. [native-inputs]: Add LIBFAKETIME.
2018-11-17gnu: Add libfaketime.Ludovic Courtès
* gnu/packages/check.scm (libfaketime): New variable.
2018-11-17gnu: Add ClamAV.Eric Bavier
* gnu/packages/antivirus.scm: New file. * gnu/packages/patches/clamav-system-tomsfastmath.patch, gnu/packages/patches/clamav-config-llvm-libs.patch: New files. * gnu/local.mk (GNU_SYSTEM_MODULES): Add new module. (dist_patch_DATA): Add patches. Co-authored-by: Christopher Baines <mail@cbaines.net>
2018-11-17gnu: Add TomsFastMath.Eric Bavier
* gnu/packages/multiprecision.scm (tomsfastmath): New variable. * gnu/packages/patches/tomsfastmath-constness.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-17llvm: Build with RTTI by default.Eric Bavier
Increases size of llvm@6 by 2.5MiB (2.5%), but saves building specialized llvm's with rtti enabled for packages that require RTTI when linking with the llvm libraries. * gnu/packages/llvm.scm (llvm-3.8-with-rtti): Remove variable. (llvm)[arguments]: Add '-DLLVM_REQUIRES_RTTI=1' to #:configure-flags. * gnu/packages/audio.scm (faust-2)[native-inputs]: 'llvm-3.8-with-rtti' -> 'llvm-3.8'.
2018-11-17gnu: u-boot: Update to 2018.11.Vagrant Cascadian
* gnu/packages/bootloaders.scm (u-boot): Update to 2018.11. (u-boot)[native-inputs]: Add lz4.
2018-11-16gnu: Add git-when-merged.Kyle Meyer
* gnu/packages/version-control.scm (git-when-merged): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-16gnu: Add caps-plugins-lv2.Thorsten Wilms
* gnu/packages/audio.scm (caps-plugins-lv2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-16gnu: tiled: Update to 1.2.1.David Thompson
* gnu/packages/game-development.scm (tiled): Update to 1.2.1.
2018-11-16guile: newt: Update revision to 2.Mathieu Othacehe
* gnu/packages/guile.scm (guile-newt): Update revision to 2.
2018-11-16gnu: Add cmh.Andreas Enge
* gnu/packages/algebra.scm (cmh): New variable.
2018-11-16gnu: gp2c: Update to 0.0.11pl1.Andreas Enge
* gnu/packages/algebra.scm (gp2c): Update to 0.0.11pl1.
2018-11-15gnu: emacs-realgud: Patch configure.ac to repair the build.Maxim Cournoyer
This fixes https://bugs.gnu.org/33196, a build problem caused by a defective Elisp snippet in a check in configure.ac. * gnu/packages/patches/emacs-realgud-fix-configure-ac.patch: Add patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/emacs.scm (emacs-realgud)[source]: Use it.
2018-11-15gnu: Add nanopolish.pimi
* gnu/packages/bioinformatics.scm (nanopolish): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-11-15gnu: sambamba: Update to 0.6.8.Roel Janssen
* gnu/packages/bioinformatics.scm (sambamba): Update to 0.6.8.
2018-11-14gnu: bioinformatics: Return #t from all phases and snippets.Mark H Weaver
* gnu/packages/bioinformatics.scm (bamtools, ribotaper, bioawk) (codingquarry, fraggenescan, minced, pplacer, star, subread, sailfish) (salmon): Return #t from all phases and snippets, use 'invoke' where appropriate, and remove vestigal plumbing.
2018-11-14gnu: databases: Return #t from all phases.Mark H Weaver
* gnu/packages/databases.scm (4store, go-gopkg.in-mgo.v2, mongodb) (sparql-query, tdb, sqlcipher, python-sqlparse, mongo-tools): Return #t from all phases, use invoke where appropriate, and remove vestigial plumbing.
2018-11-14gnu: compression: Return #t from all phases.Mark H Weaver
* gnu/packages/compression.scm (perl-compress-raw-zlib, java-snappy) (java-iq80-snappy, pzstd, java-tukaani-xz): Return #t from all phases.
2018-11-14gnu: check: Return #t from all phases.Mark H Weaver
* gnu/packages/check.scm (cmdtest, python-pytest-cov, python-fixtures) (python-pytest-localserver, python-pytest-flakes) (python2-coverage-test-runner, python-pylint, python-behave-web-api): Return #t from all phases, and use invoke where appropriate.
2018-11-14gnu: audio: Return #t from all phases.Mark H Weaver
* gnu/packages/audio.scm (clalsadrv, jack-2, libsbsms, zita-convolver) (zita-resampler, zita-alsa-pcmi, gsm, cava): Return #t from all phases. (ladspa): Use 'modify-phases'. Return #t from all phases.
2018-11-14gnu: xorg: Return #t from all phases.Mark H Weaver
* gnu/packages/xorg.scm (xcompmgr) * gnu/packages/xdisorg.scm (xdotool, scrot, unclutter, xscreensaver) (tint2, nxbelld, xautolock): Return #t from all phases.
2018-11-14gnu: xml: Return #t from all phases.Mark H Weaver
* gnu/packages/xml.scm (python-libxml2, perl-xml-sax, xlsx2csv, libxls) (java-kxml2): Return #t from all phases.
2018-11-14gnu: video: Return #t from all phases.Mark H Weaver
* gnu/packages/video.scm (youtube-dl-gui, avidemux, xvid, twitchy, aegisub): Return #t from all phases, use invoke where appropriate, and remove vestigial plumbing.
2018-11-14gnu: perl: Return #t from all phases.Mark H Weaver
* gnu/packages/gd.scm (perl-gd-securityimage) * gnu/packages/libevent.scm (perl-ev) * gnu/packages/markup.scm (perl-text-markdown-discount) * gnu/packages/perl-check.scm (perl-test2-bundle-extended) * gnu/packages/perl.scm (perl-digest-md5, perl-encode-hanextra) (perl-ipc-run, perl-pathtools) * gnu/packages/photo.scm (perl-image-exiftool): Return #t from all phases.
2018-11-14gnu: networking: Return #t from all phases.Mark H Weaver
* gnu/packages/networking.scm (miredo, tcp-wrappers, librdkafka, ifstatus) (iodine, httpstat, perl-socket6, perl-netaddr-ip, libproxy, openvswitch) (libnet, asio): Return #t from all phases.
2018-11-14gnu: linux: Return #t from all phases.Mark H Weaver
* gnu/packages/linux.scm (iproute, ntfs-3g, cpupower, radeontop, tlp): Return #t from all phases.
2018-11-14gnu: image: Return #t from all phases.Mark H Weaver
* gnu/packages/image.scm (libpng-apng, pngcrush, leptonica, zimg) (perceptualdiff): Return #t from all phases.
2018-11-14gnu: admin: Return #t from all phases.Mark H Weaver
* gnu/packages/admin.scm (daemon-tools, rottlog, wpa-supplicant-minimal) (wakelan, cpulimit, nmap, sunxi-tools): Return #t from all phases.
2018-11-14gnu: linux-libre: Update to 4.19.2.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.2. (%linux-libre-hash): Update hash.
2018-11-14gnu: linux-libre@4.14: Update to 4.14.81.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.81. (%linux-libre-4.14-hash): Update hash.
2018-11-14gnu: linux-libre@4.9: Update to 4.9.137.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.137.
2018-11-14gnu: texlive-bin: Fix substitution regexp.Ludovic Courtès
This is a followup to commit be200ef316478585059041a33d8f4287017dea5a. * gnu/packages/tex.scm (texlive-bin)[arguments]: In 'disable-failing-test' phase, escape "|" characters.
2018-11-14gnu: Add fenics.Paul Garlick
* gnu/packages/simulation.scm (fenics): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14gnu: Add fenics-dolfin.Paul Garlick
* gnu/packages/simulation.scm (fenics-dolfin): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14gnu: Add python-fenics-ffc.Paul Garlick
* gnu/packages/simulation.scm (python-fenics-ffc): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14gnu: Add python-fenics-fiat.Paul Garlick
* gnu/packages/simulation.scm (python-fenics-fiat): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14gnu: Add python-fenics-ufl.Paul Garlick
* gnu/packages/simulation.scm (python-fenics-ufl): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14gnu: Add python-fenics-dijitso.Paul Garlick
* gnu/packages/simulation.scm (python-fenics-dijitso): New varaible. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14gnu: Add python-slepc4py.Paul Garlick
* gnu/packages/maths.scm (python-slepc4py): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14gnu: Add python-petsc4py.Paul Garlick
* gnu/packages/maths.scm (python-petsc4py): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14gnu: Add python-mpi4py.Paul Garlick
* gnu/packages/mpi.scm (python-mpi4py): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14gnu: guix-daemon: Install 'guix-authenticate'.Ludovic Courtès
Fixes <https://bugs.gnu.org/33368>. Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>. * gnu/packages/package-management.scm (guix-daemon)[arguments]: In 'install' phase, build "install-nodist_libexecSCRIPTS" target to install 'guix-authenticate'.
2018-11-14Merge branch 'master' into core-updatesMarius Bakke
2018-11-14gnu: aide: Provide libpcre.a and libz.a.Marius Bakke
* gnu/packages/admin.scm (aide)[inputs]: Add PCRE:STATIC and ZLIB:STATIC.
2018-11-14gnu: xf86-video-r128: Update to 6.12.0.Marius Bakke
* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.12.0.
2018-11-14gnu: mtools: Update to 4.0.20.Marius Bakke
* gnu/packages/mtools.scm (mtools): Update to 4.0.20. [source](uri): Change to 'bz2' compressed tarball.
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