aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages
AgeCommit message (Collapse)Author
2021-04-29gnu: nano: Update to 5.7.Efraim Flashner
* gnu/packages/nano.scm (nano): Update to 5.7.
2021-04-29gnu: mpfrcx: Update to 0.6.1.Andreas Enge
* gnu/packages/algebra.scm (mpfrcx): Update to 0.6.1.
2021-04-29gnu: bigloo: Update to 4.3g.Guillaume Le Vaillant
* gnu/packages/scheme.scm (bigloo): Update to 4.3g. [source]: Remove bundled libunistring and pcre. [arguments]: Add 'fix-gmp-detection' phase. Add options to 'configure' phase to throw an error when gmp is not found.
2021-04-29gnu: Update bedtools to 2.30.0.Roel Janssen
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.30.0, [inputs]: Use latest samtools.
2021-04-29gnu: Update samtools to 1.12.Roel Janssen
* gnu/packages/bioinformatics.scm (samtools): Update to 1.12.
2021-04-29gnu: Update bcftools to 1.12.Roel Janssen
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.12.
2021-04-29gnu: htslib: Update to 1.12.Roel Janssen
* gnu/packages/bioinformatics.scm (htslib): Update to 1.12.
2021-04-29gnu: kmscon: Fix layout setup.Mathieu Othacehe
Kmscon may discover multiple inputs, corresponding to multiple devices. This means that the uxkb_dev_keymap_update function may be called multiple times, and the FIFO is registered on each input poll loop. When a new layout is written on the FIFO by the installer, the first input picking up the message, will apply the new layout. However, that input may not be the input that the user is currently using. To fix it, register the FIFO on the first input poll loop, but apply the new layout on all the inputs in the uxkb_keymap_update_handler function. * gnu/packages/patches/kmscon-runtime-keymap-switch.patch (uxkb_keymap_update_handler): Apply the new layout to all the inputs. (input_new_dev): Register the FIFO fd only on the first input poll loop.
2021-04-29gnu: Add r-qpcr.Ricardo Wurmus
* gnu/packages/cran.scm (r-qpcr): New variable.
2021-04-29gnu: git-annex: Update to 8.20210428.Kyle Meyer
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20210428. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-29gnu: oil: Update to 0.8.10.Ryan Prior
* gnu/packages/shells.scm (oil): Update to 0.8.10. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-29gnu: Add python-hissp.BonfaceKilz
* gnu/packages/python-xyz.scm (python-hissp): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-29gnu: xaos: Update to 4.2.1.Kei Kebreau
* gnu/packages/maths.scm (xaos): Update to 4.2.1. [arguments]: Patch call to "lrelease" in XaoS.pro.
2021-04-28gnu: linux-libre-arm64-generic@5.10: Add eDP panel, audio and batteryVagrant Cascadian
support for Pinebook Pro. * gnu/packages/linux.scm (linux-libre-5.10-source): Add pinebook pro lcd patch. (linux-libre-arm64-generic-5.10): Add audio and battery modules.
2021-04-28gnu: linux-libre-arm64-generic: Add eDP panel, battery and audioVagrant Cascadian
support for Pinebook Pro. * gnu/packages/linux.scm (linux-libre-5.11-source): Add Pinebook Pro lcd patch. (linux-libre-arm64-generic): Enable audio and battery modules for Pinebook Pro. * gnu/packages/patches/linux-libre-arm64-generic-pinebook-lcd.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch.
2021-04-29gnu: emacs-hyperbole: Install images and help files.Xinglu Chen
* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Include help file and install images for the manual. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-04-29gnu: emacs-corfu: Update to 0.4.Xinglu Chen
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.4. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-04-28gnu: isc-dhcp: Update bundled BIND to 9.11.31 [security fixes].Leo Famulari
Fixes CVE-2021-{25214,25215,25216]. * gnu/packages/admin.scm (isc-dhcp)[inputs]: Update bundled BIND to 9.11.31.
2021-04-28gnu: bind: Update to 9.16.15 [fixes CVE-2021-25214, CVE-2021-25215, ↵Tobias Geerinckx-Rice
CVE-2021-25216]. * gnu/packages/dns.scm (isc-bind): Update to 9.16.15.
2021-04-28gnu: linux-libre 4.4: Update to 4.4.268.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.268. (linux-libre-4.4-pristine-source): Update hash.
2021-04-28gnu: linux-libre 4.9: Update to 4.9.268.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.268. (linux-libre-4.9-pristine-source): Update hash.
2021-04-28gnu: linux-libre 4.14: Update to 4.14.232.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.232. (linux-libre-4.14-pristine-source): Update hash.
2021-04-28gnu: linux-libre 4.19: Update to 4.19.189.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.189. (linux-libre-4.19-pristine-source): Update hash.
2021-04-28gnu: linux-libre 5.4: Update to 5.4.115.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.115. (linux-libre-5.4-pristine-source): Update hash.
2021-04-28gnu: linux-libre 5.10: Update to 5.10.33.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.33. (linux-libre-5.10-pristine-source): Update hash.
2021-04-28gnu: linux-libre: Update to 5.11.17.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.17. (linux-libre-5.11-pristine-source): Update hash.
2021-04-28gnu: pigx-bsseq: Update to 0.1.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.3. [inputs]: Add r-ggbio, r-matrixstats, and r-reshape2.
2021-04-28gnu: ustr: Don't use vsnprintf.Tobias Geerinckx-Rice
This follows up on 1059d1570b7078e6a83e067577b42ed24ee25b55, which caused new tests failures on non-cross builds. * gnu/packages/textutils.scm (ustr)[arguments]: Return "0" for ./autoconf_vsnprintf.
2021-04-28gnu: giac: Update to 1.7.0-3.Nicolas Goaziou
* gnu/packages/algebra.scm (giac): Update to 1.7.0-3.
2021-04-28gnu: python-pikepdf: Update to 2.11.4.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.11.4.
2021-04-28gnu: emacs-auctex: Update to 13.0.10.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.10.
2021-04-28gnu: ustr: Cross-compile.Tobias Geerinckx-Rice
Also fix <http://issues.guix.gnu.org/48084>. * gnu/packages/text-utils.scm (ustr)[arguments]: Use CC-FOR-TARGET. Add a new 'fix-cross-compilation phase.
2021-04-28gnu: less: Update to 581.2.Tobias Geerinckx-Rice
* gnu/packages/less.scm (less): Update to 581.2.
2021-04-28gnu: iproute2: Update to 5.12.0.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (iproute2): Update to 5.12.0.
2021-04-28gnu: folly: Update to 2021.04.26.00.Tobias Geerinckx-Rice
* gnu/packages/cpp.scm (folly): Update to 2021.04.26.00.
2021-04-28gnu: xsimd: Update to 7.5.0.Tobias Geerinckx-Rice
* gnu/packages/cpp.scm (xsimd): Update to 7.5.0.
2021-04-28gnu: fcitx-qt5: Update to 1.2.6.Tobias Geerinckx-Rice
* gnu/packages/fcitx.scm (fcitx-qt5): Update to 1.2.6.
2021-04-28gnu: ungoogled-chromium: Update to 90.0.4430.93.Marius Bakke
* gnu/packages/patches/ungoogled-chromium-system-nspr.patch, gnu/packages/patches/ungoogled-chromium-system-opus.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 90. (debian-patch): Make REVISION optional, default to %DEBIAN-REVISION. (%chromium-version): New variable. (%ungoogled-revision): Set to 90.0.4430.85-1-11-g3184907. (%debian-revision): Set to debian/90.0.4430.85-1. (%debian-patches): Add more patches; update hashes. (%ungoogled-origin): Update hash. (%guix-patches): Remove obsolete patches. (libvpx/chromium): Update to 1.9.0-147-g61edec1ef. (ungoogled-chromium)[version]: Base on %CHROMIUM-REVISION and the last component of %UNGOOGLED-REVISION, a 'git describe --long' style ID. [arguments]: Add build_with_flite_lib in #:configure-flags. Add openjpeg substitution in #:phases.
2021-04-28gnu: uBlock Origin: Update to 1.35.0.Marius Bakke
* gnu/packages/browser-extensions.scm (uassets): Update to edfb13aae. (ublock-origin): Update to 1.35.0.
2021-04-28gnu: LLVM, Clang: Add 12.0.0.Marius Bakke
* gnu/packages/patches/clang-12-tools-extra-directory.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/llvm.scm (llvm-12, clang-runtime-12, clang-12, clang-toolchain-12): New variables. (llvm-11): Inherit from LLVM-12.
2021-04-28gnu: Add lofreq.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (lofreq): New variable.
2021-04-28gnu: kraken2: Replace references to rsync.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (kraken2)[inputs]: Add rsync. [arguments]: Replace references to rsync; use WITH-DIRECTORY-EXCURSION to avoid repeating "scripts".
2021-04-28gnu: global: Fix cross compiling.Efraim Flashner
Coreutils was removed during patch review erroneously. Reported by Maxime Devos <maximedevos@telenet.be>. * gnu/packages/code.scm (global)[inputs]: Add coreutils.
2021-04-28gnu: global: Fix globash.luhui
* gnu/packages/code.scm (global)[arguments]: Add 'fix-globash phase. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-28gnu: Add python-pyliftover.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pyliftover): New variable.
2021-04-28gnu: keepassxc: Wrap binary with wrap-qt-program.Efraim Flashner
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Import qt-utils module. Replace custom 'wrap-bin phase with 'wrap-qt phase.
2021-04-28gnu: slurm: Link plugins with libslurm.Ricardo Wurmus
* gnu/packages/parallel.scm (slurm)[arguments]: Add phase patch-plugin-linker-flags to link plugins with libslurm; run autoconf phase after this new phase.
2021-04-28gnu: krona-tools: Install download scripts.Ricardo Wurmus
* gnu/packages/web.scm (krona-tools)[inputs]: Add curl and make. [arguments]: Patch and install update scripts to /share.
2021-04-28gnu: krona-tools: Update to 2.8.Ricardo Wurmus
* gnu/packages/web.scm (krona-tools): Update to 2.8.
2021-04-28gnu: Add mmc-utils.Leo Famulari
* gnu/packages/disk.scm (mmc-utils): New variable.
generated by cgit