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2017-11-27gnu: java-htsjdk: Update to 2.3.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (java-htsjdk): Update to 2.3.0. [arguments]: Build with JDK 8. [inputs]: Add java-ngs, java-snappy, java-commons-compress, java-commons-logging-minimal, java-commons-jexl-2, and java-xz. [native-inputs]: Add java-testng.
2017-11-27gnu: Add java-commons-jexl-2.Ricardo Wurmus
* gnu/packages/java.scm (java-commons-jexl-2): New variable.
2017-11-27gnu: Add javacc-4.Ricardo Wurmus
* gnu/packages/java.scm (javacc-4): New variable.
2017-11-27gnu: Add javacc.Ricardo Wurmus
* gnu/packages/java.scm (javacc): New variable.
2017-11-27gnu: Add java-snappy-1.Ricardo Wurmus
* gnu/packages/compression.scm (java-snappy-1): New variable.
2017-11-27gnu: librecad: Ensure that icons are found at runtime.Ricardo Wurmus
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase "wrap-executable".
2017-11-27gnu: r-rhdf5: Fix build phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Fix "unpack-smallhdf5" phase.
2017-11-26gnu: shotwell: Update to 0.27.1.Leo Famulari
* gnu/packages/gnome.scm (shotwell): Update to 0.27.1.
2017-11-26gnu: fish-guix: Use new URL.ng0
* gnu/packages/shells.scm (fish-guix)[source]: Use new URL. (home-page): Use new URL. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-26gnu: python-pycanberra: Switch to new download URL.ng0
* gnu/packages/libcanberra.scm (python-pycanberra)[source]: Use new URL. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-26gnu: crawl: Update to 0.20.1.nee
* gnu/packages/games.scm (crawl): Update to 0.20.1. (crawl-tiles): Update to 0.20.1. [native-inputs]: Add pngcrush. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-26gnu: openntpd: Update to 6.2p3.Efraim Flashner
* gnu/packages/ntp.scm (openntpd): Update to 6.2p3.
2017-11-26gnu: exim: Fix CVE-2017-16943.Leo Famulari
* gnu/packages/patches/exim-CVE-2017-16943.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mail.scm (exim)[source]: Use it.
2017-11-26gnu: image: Rename pngcrunch to pngcrush and update it.nee
* gnu/packages/image.scm (pngcrush): Renamed from pngcrunch. [version]: update to 1.8.13. [arguments]: Use the nolib Makefile. [origin]: Use the no-lib tar. [home-page]: update to the new website. (pngcrunch): New deprecation variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-26gnu: prosody: Add lua5.1-bitop to inputs.Clément Lassieur
It is required for mod_websocket on Lua 5.1 since Prosody 0.10. * gnu/packages/messaging.scm (prosody)[inputs]: Add lua5.1-bitop.
2017-11-26gnu: Add lua5.1-bitop.Clément Lassieur
* gnu/packages/lua.scm (make-lua-bitop): New procedure. (lua5.2-bitop): Call make-lua-bitop. (lua5.1-bitop): New variable.
2017-11-26gnu: prosody: Update to 0.10.0.Rutger Helling
* gnu/packages/messaging.scm (prosody): Update to 0.10.0. Signed-off-by: Clément Lassieur <clement@lassieur.org>
2017-11-26gnu: qtox: Update to 1.13.0.Rutger Helling
* gnu/packages/messaging.scm (qtox): Update to 1.13.0. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-11-26gnu: tidy-html: Update to 5.6.0.Rutger Helling
* gnu/packages/web.scm (tidy-html): Update to 5.6.0. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-11-26gnu: mongodb: Remove some bundled sources.Efraim Flashner
* gnu/packages/databases.scm (mongodb)[source]: Add snippet to remove some of the bundled sources. [input]: Remove unused boost input.
2017-11-26gnu: mongodb: Use system wiredtiger when available.Efraim Flashner
* gnu/packages/databases.scm (mongodb)[inputs]: Add wiredtiger on 64-bit systems. [arguments]: When using wiredtiger, use system wiredtiger.
2017-11-26gnu: mongodb: Build without wiredtiger on 32-bit systems.Efraim Flashner
* gnu/packages/databases.scm (mongodb)[arguments]: Add a configure-flag to build without wiredtiger support on 32-bit systems.
2017-11-25gnu: mongodb: Update to 3.4.10.Leo Famulari
* gnu/packages/databases.scm (mongodb): Update to 3.4.10.
2017-11-25gnu: diffoscope: Fix error messages related to comparison tools.Kei Kebreau
* gnu/packages/package-management.scm (diffoscope)[arguments]: Replace readelf substitution and add stat and getfacl substitutions. [inputs]: Add acl. Errors fixed include the following: "FileNotFoundError: [Errno 2] No such file or directory: 'readelf'" "diffoscope.comparators.directory: Unable to find 'getfacl', some directory metadata differences might not be noticed." "diffoscope.comparators.directory: Unable to find 'stat'"
2017-11-25gnu: qtsensors: Disable parallel tests.Efraim Flashner
* gnu/packages/qt.scm (qtsensors)[arguments]: Disable parallel tests.
2017-11-25gnu: guile-emacs: Resurrect, fixes #29186.Jan Nieuwenhuizen
* gnu/packages/patches/guile-emacs-fix-configure.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/emacs.scm (guile-emacs): Use it. Add workaround for src/deps dir creation. Fixes #29186.
2017-11-25gnu: enlightenment: Update to 0.22.1.Efraim Flashner
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.1.
2017-11-25gnu: efl: Update to 1.20.6.Efraim Flashner
* gnu/packages/enlightenment.scm (efl): Update to 1.20.6.
2017-11-25gnu: utox: Make CHECK a native-input.Leo Famulari
This is a followup to commit 907ab9e8cbab10413848dfc8982cfc851e03903f. * gnu/packages/messaging.scm (utox)[inputs]: Move CHECK ... [native-inputs]: ... here.
2017-11-25gnu: linux-libre: Update to 4.14.2.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.2. (%linux-libre-hash): Update hash.
2017-11-25gnu: linux-libre@4.9: Update to 4.9.65.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.65.
2017-11-25gnu: linux-libre@4.4: Update to 4.4.102.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.102.
2017-11-25gnu: Add guile-dsv.Alex Sassmannshausen
* gnu/packages/guile.scm (guile-dsv): New variable.
2017-11-24gnu: mail: Remove python-django-mailman3.Christopher Baines
This package fails to build, as django-mailman3 currently only works with Python 2. * gnu/packages/mail.scm (python-django-mailman3): Removed variable. (python2-django-mailman3): Inline the use of python-django-mailman3, and remove the use of package-with-python2.
2017-11-24gnu: django: Fix building python-django-allauth.Christopher Baines
* gnu/packages/django.scm (python-django-allauth)[arguments]: Modify the standard phases to skip a test, and run the tests using django-admin with the settings configured.
2017-11-25gnu: Add emacs-highlight-stages.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-highlight-stages): New variable. * gnu/packages/patches/emacs-highlight-stages-add-gexp.patch: New file. * gnu/local.mk (dist_patch_DATA): Add this.
2017-11-24gnu: java-fasterxml-jackson-dataformat-xml: Update to 2.9.2.Alex Vong
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-xml): Update to 2.9.2. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24gnu: java-fasterxml-jackson-dataformat-yaml: Update to 2.9.2.Alex Vong
* gnu/packages/java.scm (java-fasterxml-jackson-dataformat-yaml): Update to 2.9.2. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24gnu: java-fasterxml-jackson-modules-base-jaxb: Update to 2.9.2.Alex Vong
* gnu/packages/java.scm (java-fasterxml-jackson-modules-base-jaxb): Update to 2.9.2. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24gnu: java-fasterxml-jackson-databind: Update to 2.9.2.Alex Vong
* gnu/packages/java.scm (java-fasterxml-jackson-databind): Update to 2.9.2. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24gnu: java-fasterxml-jackson-core: Update to 2.9.2.Alex Vong
* gnu/packages/java.scm (java-fasterxml-jackson-core): Update to 2.9.2. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24gnu: java-fasterxml-jackson-annotations: Update to 2.9.2.Alex Vong
* gnu/packages/java.scm (java-fasterxml-jackson-annotations): Update to 2.9.2. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2017-11-24gnu: php: Update to 7.1.12.Julien Lepiller
* gnu/packages/php.scm (php): Update to 7.1.12.
2017-11-24gnu: gcl: Update snapshot.Kei Kebreau
* gnu/packages/lisp.scm (gcl): Update to 2.6.12-1.5956140. [arguments]: Remove CFLAGS from and add GCL_CC and CC to make-flags; adjust pre-conf phase. This update includes small upstream bug fixes and optimizations.
2017-11-24gnu: python-pytz, python-pytzdata: Update to 2017.3.x.Tobias Geerinckx-Rice
* gnu/packages/time.scm (python-pytz): Update to 2017.3. (python-pytzdata): Update to 2017.3.1.
2017-11-24gnu: knot: Update to 2.6.3.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (knot): Update to 2.6.3.
2017-11-24gnu: emacs-org-contrib: Fix typo in description.Tobias Geerinckx-Rice
* gnu/packages/emacs.scm (emacs-org-contrib)[description]: Fix typo.
2017-11-24gnu: system->defconfig: Fix typo.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (system->defconfig): Fix typo.
2017-11-24gnu: coq-interval: Fix source URL for 3.3.0.Ludovic Courtès
This is a followup to 6efc99967800183daa74ba2ebff6185dfcf1b33d. Fixes <https://bugs.gnu.org/29284>. Reported by Efraim Flashner <efraim@flashner.co.il>. * gnu/packages/ocaml.scm (coq-interval): Adjust URL.
2017-11-24gnu: parallel: Update to 20171122.Rutger Helling
* gnu/packages/parallel.scm (parallel): Update to 20171122.
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