| Age | Commit message (Expand) | Author |
|---|
| 2021-11-16 | gnu: Add julia-sundials-jull...* gnu/packages/julia-jll.scm (julia-sundials-jll): New variable.
* gnu/packages/maths.scm (sundials-julia): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Jean-Baptiste Volatier |
| 2021-11-16 | Revert "gnu: Add cl-https-everywhere."...With thanks to jlicht on IRC:
sbcl-package->cl-source-package assumes all inputs are packages
which isn't the case here.
This reverts commit e31d48d8db09e723727eeadbeea22d677f5d1d52.
| Efraim Flashner |
| 2021-11-16 | gnu: julia-pycall: Update to 1.92.5....* gnu/packages/julia-xyz.scm (julia-pycall): Update to 1.92.5.
| Efraim Flashner |
| 2021-11-16 | build-system/julia: Enable Julia Pkg to find installed packages....Julia's built-in package manager (Pkg) looks for packages in
JULIA_DEPOT_PATH/packages/PACKAGENAME/XXXX, where XXXX is a string
encoding package UUID and SHA1 of files. The link-depot phase creates
a link at the correct location to allow Pkg to find packages that were
already installed by Guix.
* guix/build/julia-build-system.scm (link-depot): New phase.
(%package-path): Modified package path from packages/ to loadpath/.
(project.toml->uuid): New procedure, retrive package uuid from TOML file.
(precompile, check): Adjust to the change in paths.
(%standard-phases): Add link-depot phase.
(julia-build): Add julia-package-uuid keyword.
* guix/build-system/julia.scm (julia-build): Also use the
julia-package-uuid keyword.
* gnu/packages/julia-jll.scm (julia-bzip2-jll, julia-cairo-jll,
julia-compilersupportlibraries-jll, julia-expat-jll, julia-ffmpeg-jll,
julia-fontconfig-jll, julia-freetype2-jll, julia-fribidi-jll,
julia-gettext-jll, julia-glib-jll, julia-gr-jll, julia-gumbo-jll,
julia-imagemagick-jll, julia-jllwrappers-jll, julia-jpegturbo-jll,
julia-lame-jll, julia-libass-jll, julia-libfdk-aac-jll,
julia-libffi-jll, julia-libgcrypt-jll, julia-libglvnd-jll,
julia-libgpg-error-jll, juli-libiconv-jll, julia-libmount-jll,
julia-libpng-jll, julia-libsass-jll, julia-libtiff-jll,
julia-libuuid-jll, julia-libvorbis-jll, julia-lzo-jll,
julia-mbedtls-jll, julia-ogg-jll, julia-openspecfun-jll,
julia-openssl-jll, julia-opus-jll, julia-pcre-jll, julia-pixman-jll,
julia-qt5base-jll, julia-wayland-jll, julia-wayland-protocols-jll,
julia-x264-jll, julia-x265-jll, julia-xkbcommon-jll, julia-xml2-jll,
julia-xorg-libpthread-stubs-jll, julia-xorg-libx11-jll,
julia-xorg-libxau-jll, julia-xorg-libxcb-jll, julia-xorg-libxcursor-jll,
julia-xorg-libxdmcp-jll, julia-xorg-libxext-jll,
julia-xorg-libxfixes-jll, julia-xorg-libxi-jll,
julia-xorg-libxinerama-jll, julia-xorg-libxkbfile-jll,
julia-xorg-libxrandr-jll, julia-xorg-libxrender-jll,
julia-xorg-xcb-util-jll, julia-xorg-xcb-util-keysyms-jll,
julia-xorg-xcb-util-renderutil-jll, julia-xorg-xcb-util-wm-jll,
julia-xorg-xkbcomp-jll, julia-xorg-xkeyboard-config-jll,
julia-xorg-xtrans-jll, julia-xslt-jll, julia-zlib-jll, julia-zstd-jll)
[argument]: Adjust the order of the phases to the change in the
julia-build-system.
* gnu/packages/julia-xyz.scm (julia-bufferedstreams, julia-calculus,
julia-dataframes, julia-datavalues, julia-distances, julia-documenter,
julia-dualnumbers, julia-ellipsisnotation, julia-expronicon,
julia-fileio, julia-fixedpointnumbers, julia-functionwrappers,
julia-fuzzycompletions, julia-genericlinearalgebra, julia-genericschur,
julia-geometrybasics, julia-imagemagick, julia-infinity,
julia-matrixfactorizations, julia-media, julia-missings, julia-nnlib,
julia-optimtestproblems, julia-orderedcollections, julia-prettytables,
julia-pycall, julia-quadmath, julia-safetests, julia-stackviews)
[arguments]: Correct paths to reflect change of %package-path modify
order of phases as link-depot needs to run on an unmodified src
directory add package-name-uuid keyword argument to packages without
Project.toml file.
* gnu/packages/julia.scm (julia)[native-search-paths]: Correct paths to
reflect change of %package-path modify order of phases as link-depot
needs to run on an unmodified src directory.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Jean-Baptiste Volatier |
| 2021-11-16 | gnu: Add cl-https-everywhere....* gnu/packages/lisp-xyz.scm (cl-https-everywhere, sbcl-cl-https-everywhere):
New variables.
| Pierre Neidhardt |
| 2021-11-16 | gnu: Add vernacular....* gnu/packages/lisp-xyz.scm (cl-vernacular, sbcl-vernacular): New variables.
| Pierre Neidhardt |
| 2021-11-16 | gnu: Add fxml....* gnu/packages/lisp-xyz.scm (cl-fxml, sbcl-fxml): New variables.
| Pierre Neidhardt |
| 2021-11-16 | gnu: Add xpath....* gnu/packages/lisp-xyz.scm (cl-xpath, sbcl-xpath): New variables.
| Pierre Neidhardt |
| 2021-11-16 | gnu: Add overlord....* gnu/packages/lisp-xyz.scm (cl-overlord, sbcl-overlord): New variables.
| Pierre Neidhardt |
| 2021-11-16 | gnu: Add cxml-rng....* gnu/packages/lisp-xyz.scm (cl-cxml-rng, sbcl-cxml-rng): New variables.
| Pierre Neidhardt |
| 2021-11-16 | gnu: Add bit-smasher....* gnu/packages/lisp-xyz.scm (cl-bit-smasher, ecl-bit-smasher, sbcl-bit-smasher): New variables.
| Pierre Neidhardt |
| 2021-11-16 | gnu: Add cl-base58....* gnu/packages/lisp-xyz.scm (cl-base58, ecl-cl-base58, sbcl-cl-base58): New variables.
| Pierre Neidhardt |
| 2021-11-16 | gnu: Add exit-hooks....* gnu/packages/lisp-xyz.scm (cl-exit-hooks, ecl-exit-hooks, sbcl-exit-hooks):
New variables.
| Pierre Neidhardt |
| 2021-11-16 | gnu: Add cl-strftime....* gnu/packages/lisp-xyz.scm (cl-strftime, ecl-cl-strftime, sbcl-cl-strftime):
New variables.
| Pierre Neidhardt |
| 2021-11-16 | gnu: Add sbcl-cl-tld....* gnu/packages/lisp-xyz.scm (sbcl-cl-tld): New variable.
| Pierre Neidhardt |
| 2021-11-16 | gnu: sbcl-cl-webkit: Update to 3.2.0....* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 3.2.0.
| Pierre Neidhardt |
| 2021-11-16 | gnu: sbcl-cmd: Update to 20211009....* gnu/packages/lisp-xyz.scm (sbcl-cmd): Update to 20211009.
| Pierre Neidhardt |
| 2021-11-15 | gnu: guix-build-coordinator: Update to 0-37.200ffe7....* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-37.200ffe7.
| Christopher Baines |
| 2021-11-15 | gnu: libuv-for-node: Update to 1.42.0....* gnu/packages/libevent.scm (libuv-for-node): Update to 1.42.0.
| Jelle Licht |
| 2021-11-15 | gnu: node-lts: Update to 14.18.1 [security fixes]....* gnu/packages/node.scm (node-lts): Update to 14.18.1.
[native-inputs]: Replace c-ares with c-ares-for-node.
[inputs]: Replace c-ares with c-ares-for-node.
Includes fixes for CVE-2021-22918, CVE-2021-22930, CVE-2021-22931,
CVE-2021-22939, and CVE-2021-22940.
| Jelle Licht |
| 2021-11-15 | gnu: llhttp-bootstrap: Update to 2.1.4 [security-fixes]....* gnu/packages/node.scm (llhttp-bootstrap): Update to 2.1.4.
Includes fixes for CVE-2021-22959 and CVE-2021-22960.
| Jelle Licht |
| 2021-11-15 | gnu: Add c-ares-for-node....* gnu/packages/adns.scm (c-ares-for-node): New variable.
Co-authored-by: Marius Bakke <marius@gnu.org>
| Jelle Licht |
| 2021-11-15 | gnu: node: Add cpe-name....* gnu/packages/node.scm (node)[properties]: Add cpe-name.
| Jelle Licht |
| 2021-11-15 | gnu: taskwarrior: Update to 2.6.1....* gnu/packages/task-management.scm (taskwarrior): Update to 2.6.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Lenny Händler |
| 2021-11-15 | gnu: emacs-helm: Update to 3.8.1....* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.8.1.
| Nicolas Goaziou |
| 2021-11-15 | gnu: pdfarranger: Update to 1.8.0....* gnu/packages/pdf.scm (pdfarranger): Update to 1.8.0.
| Nicolas Goaziou |
| 2021-11-15 | gnu: julia: Fix llvm-julia version....LLVM bundled in the binary julia distributed by upstream has its
version with a "jl" suffix. The llvm-julia package does not have
this suffix, which causes some packages (e. g. LLVM.jl) to fail to
load.
LLVM.jl does this in order to be sure that it is loading a LLVM as
patched for julia and not LLVM from the distribution which will
lack the correct patches on distribs other than GUIX.
I guess there might be other packages that rely on this, so we
should fix our llvm-julia package.
* gnu/packages/julia.scm (llvm)
[source]: Add missing upstream patch
[arguments]: Add configure-flag to set a "jl" suffix to llvm version
(julia)[arguments]: Symlink llvm to llvm-11jl.so
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Jean-Baptiste Volatier |
| 2021-11-15 | gnu: emacs-consult: Update to 0.13....* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.13.
| Nicolas Goaziou |
| 2021-11-15 | gnu: emacs-exwm: Update to 0.26....* gnu/packages/emacs-xyz.scm (emacs-exwm): Update to 0.26.
| Nicolas Goaziou |
| 2021-11-15 | gnu: emacs-rustic: Update to 2.1....* gnu/packages/emacs-xyz.scm (emacs-rustic): Update to 2.1.
| Nicolas Goaziou |
| 2021-11-15 | gnu: emacs-marginalia: Update to 0.10....* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.10.
| Nicolas Goaziou |
| 2021-11-15 | gnu: borgmatic: Fix typo in description....* gnu/packages/backup.scm (borgmatic): Fix typo, "software" being a mass noun.
| Nicolas Goaziou |
| 2021-11-15 | gnu: hpcguix-web: Update to 0.2.0....* gnu/packages/web.scm (hpcguix-web): Update to 0.2.0.
[arguments]: In 'wrap-program' phase, add guile-zlib to DEPS.
[native-inputs]: Add GUILE.
[inputs]: Add GUILE-ZLIB, GUILE-COMMONMARK, and GUILE-JSON.
[propagated-inputs]: Remove. These were pointless.
* gnu/services/web.scm (<hpcguix-web-configuration>)[address, port]: New
fields.
* doc/guix.texi (Web Services): Document them.
* gnu/tests/web.scm (%hpcguix-web-os): Add 'address'.
| Ludovic Courtès |
| 2021-11-15 | gnu: python-pytorch: Update to 1.10.0....* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.0.
* gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust.
| Ludovic Courtès |
| 2021-11-15 | gnu: Add python-minikanren....* gnu/packages/python-xyz.scm (python-minikanren): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ryan Prior |
| 2021-11-15 | gnu: Add python-etuples....* gnu/packages/python-xyz.scm (python-etuples): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ryan Prior |
| 2021-11-15 | gnu: Add python-cons....* gnu/packages/python-xyz.scm (python-cons): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ryan Prior |
| 2021-11-15 | gnu: Add python-logical-unification....* gnu/packages/python-xyz.scm (python-logical-unification): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ryan Prior |
| 2021-11-15 | gnu: Add python-multipledispatch....* gnu/packages/python-xyz.scm (python-multipledispatch): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ryan Prior |
| 2021-11-15 | gnu: clang-toolchain: Add libomp....* gnu/packages/llvm.scm (make-clang-toolchain)[inputs]: Add LIBOMP.
| Ludovic Courtès |
| 2021-11-15 | gnu: Add python-rtree....* gnu/packages/geo.scm (python-rtree): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Vinicius Monego |
| 2021-11-15 | gnu: Add python-ta-lib....* gnu/packages/finance.scm (python-ta-lib): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Foo Chuan Wei |
| 2021-11-15 | gnu: Add cl-chemboy....* gnu/packages/lisp-xyz.scm (cl-chemboy, ecl-chemboy, sbcl-chemboy):
New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Foo Chuan Wei |
| 2021-11-15 | gnu: Add cl-chemical-compounds....* gnu/packages/lisp-xyz.scm (cl-chemical-compounds,
ecl-chemical-compounds, sbcl-chemical-compounds): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Foo Chuan Wei |
| 2021-11-15 | gnu: Add cl-periodic-table....* gnu/packages/lisp-xyz.scm (cl-periodic-table, ecl-periodic-table,
sbcl-periodic-table): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Foo Chuan Wei |
| 2021-11-15 | gnu: python-scanpy: Run tests conditionally....* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Respect TESTS?
argument.
| Ricardo Wurmus |
| 2021-11-15 | gnu: guile-netlink: Update to 1.1....* gnu/packages/guile-xyz.scm (guile-netlink): Update to 1.1.
| Julien Lepiller |
| 2021-11-15 | gnu: python-pingouin: Update to 0.5.0....* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.0.
| Arun Isaac |
| 2021-11-15 | gnu: python-scipy: Run tests conditionally....* gnu/packages/python-science.scm (python-scipy)[arguments]: Respect TESTS? in
'CHECK phase.
| Ricardo Wurmus |
| 2021-11-15 | gnu: Add python-hnswlib....* gnu/packages/python-xyz.scm (python-hnswlib): New variable.
| Ricardo Wurmus |
