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2024-01-30gnu: Add go-github-com-matryer-try.Thomas Ieong
* gnu/packages/golang-check.scm (go-github-com-matryer-try): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Ic354425938374fcd29e871a597da63a7a390cfa1
2024-01-30gnu: Add go-github-com-djherbis-atime.Thomas Ieong
* gnu/packages/golang-xyz.scm (go-github-com-djherbis-atime): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I320070d68e7f590f830060904f5cbdf59d839d1d
2024-01-30gnu: Add (gnu packages golang-xyz) module.Sharlatan Hellseher
* gnu/packages/golang-xyz.scm: New file. * gnu/local.mk: Add to gnu/packages/golang-xyz.scm scope. Change-Id: I25e434de1adc29c2f08146f040755287c63632d6
2024-01-30gnu: go-github-com-go-jose-go-jose-v3: Move to (gnu packages golang-web).Sharlatan Hellseher
Drop inheritance from go-gopkg-in-square-go-jose-v2 as it's archived by the owner on Feb 27, 2023. * gnu/packages/golang.scm (go-github-com-go-jose-go-jose-v3): Move from here ... * gnu/packages/golang-web.scm: ... to here. Change-Id: I67838e18a43d93e5ae3b62e9645b7d22cf474103
2024-01-30gnu: axoloti-patcher: Add missing headers.Ricardo Wurmus
* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Include generic headers in search paths. Change-Id: I2e1819966eb657ba4a7e0c823e6686de8599dd9a
2024-01-30gnu: axoloti-patcher: Use G-expression.Ricardo Wurmus
* gnu/packages/axoloti.scm (axoloti-patcher)[arguments]: Use G-expression; delete 'make-git-checkout-writable phase. Change-Id: I4f9b98351f1752391211f1aed84d484184d32771
2024-01-30gnu: yggdrasil: Update to 0.5.5.Artyom V. Poptsov
* gnu/packages/networking.scm (yggdrasil): Update to 0.5.5. Change-Id: Iba086d544e8225ec1b08de80f0fc3f01aa1f17b3 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-01-30gnu: guile-hoot: Update to 0.3.0.David Thompson
* gnu/packages/guile-xyz.scm (guile-hoot): Update to 0.3.0. Change-Id: I355d4b11bdd45bf87e3d7227f259907b1e7d57bd
2024-01-30gnu: r-scran: Update to 1.30.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.2. Change-Id: I49388f6307f88cb671b0a721cc4c82a4804312c6
2024-01-30gnu: r-bioccheck: Update to 1.38.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.38.2. [propagated-inputs]: Remove r-httr; add r-httr2 and r-rvest. Change-Id: I5bcf99f2e3e93141fe502f061c2f347d4f0783bc
2024-01-30gnu: r-flowcore: Update to 2.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.14.1. Change-Id: I7a8002206aaab85a722463a81939d7cea7d61644
2024-01-30gnu: r-rsubread: Update to 2.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.16.1. Change-Id: Id01d956d2f76347270d05961dba13f65b268862a
2024-01-30gnu: r-edger: Update to 4.0.12.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.12. Change-Id: If99f10f80fb7c085863d2da79cfce2b94af71543
2024-01-30gnu: r-biostrings: Update to 2.70.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.2. Change-Id: Id43796f35c5afe6fbe3a37d72e111d28937254a2
2024-01-30gnu: r-biomart: Update to 2.58.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.58.1. Change-Id: I6304e3be6919367f5d9d99ddb7aae75ab39b9985
2024-01-30gnu: r-robustbase: Update to 0.99-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-2. Change-Id: Ic6a248fd55b6b4467742040a884ed25e9d090f47
2024-01-30gnu: r-viridis: Update to 0.6.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.5. Change-Id: Iaa83edbc2a304e0327f8815967f2e28b686691a0
2024-01-30gnu: r-commonmark: Update to 1.9.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-commonmark): Update to 1.9.1. Change-Id: Ifccd39448f0d6181bfcede089aa922cd60c5293c
2024-01-30gnu: r-data-table: Update to 1.15.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-data-table): Update to 1.15.0. Change-Id: I2187d368fb461d72b07e3445bad0240ecc5cd6f1
2024-01-30gnu: r-tfruns: Update to 1.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-tfruns): Update to 1.5.2. Change-Id: Iefffe073fb7d2d54e190b3d0433dcb760dad9a10
2024-01-30gnu: r-spatstat-geom: Update to 3.2-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-geom): Update to 3.2-8. Change-Id: Iab7190ff6dbe409cc1b400f6a69001a8c13ac1bc
2024-01-30gnu: r-iheatmapr: Update to 0.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-iheatmapr): Update to 0.7.1. Change-Id: I83046a2d71d29a18dc15a7a568d0212947b936dd
2024-01-30gnu: r-emoa: Update to 0.5-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-emoa): Update to 0.5-2. Change-Id: Ia1138543ad4a2acf104c4fc19e2d75cfa07eed81
2024-01-30gnu: r-tidygraph: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidygraph): Update to 1.3.1. Change-Id: I597eaa3eb3afba90462b5ca0a7fed262ecf1aa60
2024-01-30gnu: r-xgboost: Update to 1.7.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-xgboost): Update to 1.7.7.1. Change-Id: I949455d58c1fdbb878a77d82e8501c5a615ed441
2024-01-30gnu: r-yulab-utils: Update to 0.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.4. Change-Id: Ic7e6288859a857ecbd23566b9e5bd1796206764c
2024-01-30gnu: r-bqtl: Update to 1.0-36.Ricardo Wurmus
* gnu/packages/cran.scm (r-bqtl): Update to 1.0-36. Change-Id: I598ad41402e05e8ed628aaf57eac4a1e47689228
2024-01-30gnu: r-listenv: Update to 0.9.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-listenv): Update to 0.9.1. Change-Id: I998a9d35b176ed8dd038fd6392f46b4052e56dd7
2024-01-30gnu: r-phylobase: Update to 0.8.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-phylobase): Update to 0.8.12. Change-Id: I4d022d85cdb6f79fae167bfd7c52a0c2620b0092
2024-01-30gnu: r-densityclust: Update to 0.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-densityclust): Update to 0.3.3. [propagated-inputs]: Remove r-rcpp; add r-cpp11. Change-Id: Ia6b5737e2225e67fa064f031d985c076694ec9ce
2024-01-30gnu: r-interp: Update to 1.1-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-interp): Update to 1.1-6. Change-Id: I846729e1637fc0f8762cf8a235cc78df2c1eb810
2024-01-30gnu: r-zip: Update to 2.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-zip): Update to 2.3.1. Change-Id: I20ff34e492271063d6baf37f59f6da181c1d7805
2024-01-30gnu: r-nestedcv: Update to 0.7.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-nestedcv): Update to 0.7.4. [propagated-inputs]: Add r-rhpcblasctl. Change-Id: Ica97cf7c960125543210c48851861d7826a8f8aa
2024-01-30gnu: r-laeken: Update to 0.5.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-laeken): Update to 0.5.3. Change-Id: I9ab9a89d88511b80efb912119ec81a24fafceb84
2024-01-30gnu: r-sp: Update to 2.1-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-sp): Update to 2.1-3. Change-Id: I111d108e6f144ecfdecf5e5ff94b6b11110a9395
2024-01-30gnu: r-powerlaw: Update to 0.80.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-powerlaw): Update to 0.80.0. Change-Id: I1b3c185ac4a8748698fe9218c262620b42f5f06d
2024-01-30gnu: r-httpuv: Update to 1.6.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.14. Change-Id: I1f650010cce97020f7b563adfcd74d7e4dec4981
2024-01-30gnu: r-ga: Update to 3.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-ga): Update to 3.2.4. Change-Id: I698d5c3eda6598c435fcf37b5e7eaaf5c4e15e63
2024-01-30gnu: r-ggm: Update to 2.5.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggm): Update to 2.5.1. [propagated-inputs]: Add r-biocmanager. Change-Id: I8db7e517b96c3c42cb05246378b4190c9c954a47
2024-01-30gnu: r-rjava: Update to 1.0-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-rjava): Update to 1.0-11. [source]: Remove snippet. [arguments]: Remove 'replace-bundled-minified-JavaScript phase. [native-inputs]: Remove esbuild. Change-Id: I008810b6919412023fc419d9cbadfea0fe2892bb
2024-01-30gnu: r-catdata: Update to 1.2.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-catdata): Update to 1.2.4. [native-inputs]: Add r-knitr. Change-Id: I7e2873a612f114d7124d5787ff70a8bf0ffefe93
2024-01-30gnu: r-r-devices: Update to 2.17.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-r-devices): Update to 2.17.2. [arguments]: Add 'set-HOME phase. [native-inputs]: Add r-r-rsp. Change-Id: Iaaead01e690e95971148ae063aa7af589969d39c
2024-01-30gnu: r-igraph: Update to 2.0.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-igraph): Update to 2.0.1.1. [properties]: Tell updater to keep extra native input "which". [native-inputs]: Add pkg-config and which. Change-Id: Id56c68784d192f7a3031a338fe63a4c17799c605
2024-01-30gnu: r-antiword: Update to 1.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-antiword): Update to 1.3.3. [properties]: Tell updater not to remove "antiword" input. [arguments]: Use G-expression. Change-Id: Ifdbf80f546b0ab3abfc3b8002ba01b46c9105a1c
2024-01-30gnu: r-sapa: Patch call of dstebz routine.Ricardo Wurmus
* gnu/packages/patches/r-sapa-lapack.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/cran.scm (r-sapa)[source]: Add it. Change-Id: I17354c4e8b3a0f322e17c9a1e17bc37c93630105
2024-01-30gnu: r-with-tests: Prevent compression of libraries.Ricardo Wurmus
Compression prevents Guix from detecting references. This is a follow-up to commit ff0d34a29bc0f19b1dd2714fc0a3bd73a244aebe. Reported-by: Jonas Freimuth. * gnu/packages/statistics.scm (r-with-tests)[arguments]: Do not compress included libraries like "parallel". Change-Id: I278d19c1504d8ac33a1fc4a941467705a37d574d
2024-01-30gnu: r-minimal, r-with-tests: Use G-expressions.Ricardo Wurmus
* gnu/packages/statistics.scm (r-minimal, r-with-tests)[arguments]: Use G-expressions. Change-Id: I241297444cdb261dfc9901efd73c436a7ccf0acf
2024-01-30gnu: python-scipy: Enable building on more architectures.Efraim Flashner
* gnu/packages/python-science.scm (python-scipy)[propagated-inputs]: Only include python-jupytext on systems where it is supported. Change-Id: Ic085094e4e3977e4c0698e8c03de09ee8e70f144
2024-01-30gnu: libhdate: Fix pkg-config file.Efraim Flashner
* gnu/packages/calendar.scm (libhdate)[source]: Add snippet to adjust the pkg-config file to have the correct prefix. Change-Id: I5273f732a4e4e512057aa8bc1ecd40a81ec7828e
2024-01-30gnu: emacspeak: Update to 59.0.Ian Eure
* gnu/packages/emacs-xyz.scm (emacspeak): Update to 59.0. [source]: Switch to git-fetch. Change-Id: I80e93286fa0de931e85f07c22e050faeaf8d0280 Signed-off-by: Clément Lassieur <clement@lassieur.org>
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