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2021-03-03gnu: hmmer: Update to 3.3.2.Tim Howes
* gnu/packages/bioinformatics.scm (hmmer): Update to 3.3.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-03gnu: bpytop: Update to 1.0.63.Michael Rohleder
* gnu/packages/admin.scm (bpytop): Update to 1.0.63. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-03gnu: Add cl-html-diff.André Alexandre Gomes
* gnu/packages/lisp-xyz.scm (cl-html-diff, ecl-cl-html-diff, sbcl-cl-html-diff): New variables. Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
2021-03-03gnu: Add cl-difflib.André Alexandre Gomes
* gnu/packages/lisp-xyz.scm (cl-difflib, ecl-cl-difflib, sbcl-cl-difflib): New variables. Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
2021-03-03gnu: sbcl-file-attributes: Update to 20210302.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-file-attributes): Update to 20210302.
2021-03-03gnu: openssh: Update to 8.5p1.Léo Le Bouter
* gnu/packages/patches/openssh-fix-ssh-copy-id.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Also unregister it. * gnu/packages/ssh.scm (openssh): Update to 8.5p1.
2021-03-03gnu: osip: Update to 5.2.0.Léo Le Bouter
* gnu/packages/telephony.scm (osip): Update to 5.2.0.
2021-03-02gnu: usync: Patch shebang.Ludovic Courtès
* gnu/packages/sync.scm (usync)[propagated-inputs]: Move SCSH to... [inputs]: ... here. New field. [arguments]: Add #:phases.
2021-03-02gnu: Add usync.Stefan Reichör
* gnu/packages/sync.scm (usync): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-02gnu: ocaml-llvm: Move to (gnu packages llvm).Ludovic Courtès
Commit 8f710cc598fb675d267f49a82cffc197f03ad52c introduced a circular dependency between ocaml.scm and llvm.scm by referring to 'llvm' from the top level of ocaml.scm. This fixes it. * gnu/packages/ocaml.scm (make-ocaml-llvm, ocaml-llvm) (ocaml-llvm-9, ocaml-llvm-10, ocaml-llvm-11): Move to... * gnu/packages/llvm.scm: ... here.
2021-03-02gnu: stgit: Update to 1.0.Stefan Reichör
* gnu/packages/version-control.scm (stgit): Update to 1.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-02gnu: Add python-jinja2-cli.Ellis Kenyő
* gnu/packages/python-xyz.scm (python-jinja2-cli): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-02gnu: Add pcg-cpp.Greg Hogan
* gnu/packages/cpp.scm (pcg-cpp): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-02gnu: r-haven: Unvendor readstat.Lars-Dominik Braun
* gnu/packages/cran.scm (r-haven) [snippet]: Remove bundled readstat. [arguments]: Patch Makevars to use system readstat. [inputs]: Replace zlib with readstat. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-02gnu: Add readstat.Lars-Dominik Braun
* gnu/packages/statistics.scm (readstat): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-03-02gnu: Python 2: Fix CVE-2021-3177.Leo Famulari
* gnu/packages/patches/python-2.7-CVE-2021-3177.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-2.7)[replacement]: New field. (python-2.7/fixed): New variable.
2021-03-02gnu: python-matplotlib: Fix running under Wayland with GTK3.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-matplotlib)[source]: Add patch. * gnu/packages/patches/python-matplotlib-run-under-wayland-gtk3.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-03-02gnu: pitivi: Update to 2021.01.0.Tobias Geerinckx-Rice
* gnu/packages/video.scm (pitivi): Update to 2021.01.0.
2021-03-02gnu: pitivi: Build from git source.Tobias Geerinckx-Rice
* gnu/packages/video.scm (pitivi)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2021-03-02gnu: bat: Update to 0.18.0.Nicolas Goaziou
* gnu/packages/rust-apps.scm (bat): Update to 0.18.0.
2021-03-02gnu: Add rust-bat-0.17.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-bat-0.17): New variable. * gnu/packages/shells.scm (rust-nu-plugin-textview-0.27)[arguments]: Use rust-bat-0.17 instead of bat as Cargo input.
2021-03-02gnu: Add rust-bugreport-0.3.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-bugreport-0.3): New variable.
2021-03-02gnu: Add rust-snailquote-0.3.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-snailquote-0.3): New variable.
2021-03-02gnu: Add rust-unicode-categories-0.1.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-unicode-categories-0.1): New variable.
2021-03-02gnu: Add rust-sys-info-0.7.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-sys-info-0.7): New variable.
2021-03-02gnu: Add rust-clircle-0.3.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-clircle-0.3): New variable.
2021-03-02gnu: rust-syntect-4: Update to 4.5.0.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-syntect-4): Update to 4.5.0.
2021-03-02gnu: rust-assert-cmd-1: Update to 1.0.3.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-assert-cmd-1): Update to 1.0.3. [arguments]: Add rust-bstr Cargo input.
2021-03-02gnu: rust-bstr-0.2: Update to 0.2.15.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-bstr-0.2): Update to 0.2.15.
2021-03-02gnu: rust-predicates-1: Update to 1.0.7.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-predicates-1): Update to 1.0.7.
2021-03-02gnu: kallisto: Update to 0.46.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (kallisto): Update to 0.46.2. [source]: Remove bundled htslib sources.
2021-03-02gnu: kallisto: Use older htslib.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (kallisto)[inputs]: Use htslib-1.9 instead of the latest.
2021-03-02gnu: liburcu: Update to 0.12.2.Tobias Geerinckx-Rice
* gnu/packages/datastructures.scm (liburcu): Update to 0.12.2.
2021-03-02gnu: xwallpaper: Update to 0.6.6.Xinglu Chen
* gnu/packages/xdisorg.scm (xwallpaper): Update to 0.6.6. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-03-02gnu: feh: Update to 3.6.3.Xinglu Chen
* gnu/packages/image-viewers.scm (feh): Update to 3.6.3. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-03-02gnu: knot-resolver: Update to 5.3.0.Simon South
* gnu/packages/dns.scm (knot-resolver): Update to 5.3.0. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-03-02gnu: bzflag: Update to 2.4.22.Nicolas Goaziou
* gnu/packages/games.scm (bzflag): Update to 2.4.22.
2021-03-02gnu: emacs-posframe: Update to 0.8.6.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 0.8.6.
2021-03-02gnu: Add gimagereader.Nicolas Goaziou
* gnu/packages/ocr.scm (gimagereader): New variable.
2021-03-02gnu: sbcl-hu.dwim.stefil: Update to 20180609.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.stefil): Update to 20180609.
2021-03-02gnu: sbcl-hu.dwim.common-lisp: Update to 2021-01-27.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.common-lisp): Update to 2021-01-27. [source]: Use new GitHub repository. [home-page]: Use full address.
2021-03-02gnu: sbcl-hu.dwim.asdf: Update to 20200724.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-hu.dwim.asdf): Update to 20200724. [source]: Use new GitHub repository.
2021-03-02gnu: Add bmake.qblade
* gnu/packages/build-tools.scm (bmake): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-03-02gnu: Add ecl-file-attributes, cl-file-attributes.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-file-attributes, ecl-file-attributes): New variables. There were mistakenly left out from the previous commit.
2021-03-02gnu: Add file-attributes.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-file-attributes, ecl-file-attributes, sbcl-file-attributes): New variables.
2021-03-02gnu: emacs-consult: Update to 0.6.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.6.
2021-03-02gnu: parallel: Update to 20210222.Efraim Flashner
* gnu/packages/parallel.scm (parallel): Update to 20210222.
2021-03-02gnu: octave: Update to 6.2.0.Efraim Flashner
* gnu/packages/maths.scm (octave): Update to 6.2.0. [source]: Download tar.xz tarball. [native-inputs]: Remove lzip.
2021-03-02gnu: font-gnu-unifont: Update to 13.0.06.Efraim Flashner
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 13.0.06.
2021-03-02gnu: libredwg: Update to 0.12.3.Efraim Flashner
* gnu/packages/engineering.scm (libredwg): Update to 0.12.3.
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