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2020-01-21gnu: rust-pest-generator-2.1: Update to 2.1.1.John Soo
* gnu/packages/crates-io.scm (rust-pest-generator-2.1): Update to 2.1.1. [arguments]: In cargo-inputs replace rust-proc-macro2-0.4 with 1.0, rust-quote-0.6 with 1.0, rust-syn-0.15 with 1.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-pest-meta-2.1: Update to 2.1.2.John Soo
* gnu/packages/crates-io.scm (rust-pest-meta-2.1): Update to 2.1.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-pest-meta-2.1: Update dependencies.John Soo
* gnu/packages/crates-io.scm (rust-pest-meta-2.1)[arguments]: Move rust-sha-1-0.8 from cargo-development-inputs to cargo-inputs. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-pest-generator-2.1: Update dependencies.John Soo
* gnu/packages/crates-io.scm (rust-pest-generator-2.1)[arguments]: Replace rust-quote-1.0 with 0.6 in cargo-inputs. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-jobserver-0.1.John Soo
* gnu/packages/crates-io.scm (rust-jobserver-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-tokio-core-0.1.John Soo
* gnu/packages/crates-io.scm (rust-tokio-core-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-quickcheck-0.6.Efraim Flashner
* gnu/packages/crates-io.scm (rust-quickcheck-0.6): New variable.
2020-01-21gnu: Add rust-regex-syntax-0.5.Efraim Flashner
* gnu/packages/crates-io.scm (rust-regex-syntax-0.5): New variable.
2020-01-21gnu: Add rust-rand-core-0.2.Efraim Flashner
* gnu/packages/crates-io.scm (rust-rand-core-0.2): New variable.
2020-01-21gnu: Add rust-env-logger-0.5.Efraim Flashner
* gnu/packages/crates-io.scm (rust-env-logger-0.5): New variable.
2020-01-21gnu: Add rust-quickcheck-0.7.Efraim Flashner
* gnu/packages/crates-io.scm (rust-quickcheck-0.7): New variable.
2020-01-21gnu: Add rust-aho-corasick-0.6.Efraim Flashner
* gnu/packages/crates-io.scm (rust-aho-corasick-0.6.): New variable.
2020-01-21gnu: Add rust-regex-0.2.Efraim Flashner
* gnu/packages/crates-io.scm (rust-regex-0.2): New variable.
2020-01-21gnu: Add rust-env-logger-0.4.Efraim Flashner
* gnu/packages/crates-io.scm (rust-env-logger-0.4): New variable.
2020-01-21gnu: Add rust-mio-named-pipes-0.1.John Soo
* gnu/packages/crates-io.scm (rust-mio-named-pipes-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-tokio-process-0.2.John Soo
* gnu/packages/crates-io.scm (rust-tokio-process-0.2): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-tokio-signal-0.2.John Soo
* gnu/packages/crates-io.scm (rust-tokio-signal-0.2): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-cc-1.0: Update to 1.0.50.John Soo
* gnu/packages/crates-io.scm (rust-cc-1.0): Update to 1.0.50. [arguments]: Remove rust-rayon-1.1 from cargo-inputs, add rust-jobserver-0.1. Remove rust-tempdir-0.3 from cargo-development-inputs, add rust-tempfile-3.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-quick-error-1.2: Don't hide package.John Soo
* gnu/packages/crates-io.scm (rust-quick-error-1.2)[arguments]: Skip build. [properties] Remove field. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-quick-error-1.2: Update to 1.2.3.John Soo
* gnu/packages/crates-io.scm (rust-quick-error-1.2): Update to 1.2.3. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-rand-0.5.Efraim Flashner
* gnu/packages/crates-io.scm (rust-rand-0.5): New variable.
2020-01-21gnu: Add rust-hashbrown-0.5.John Soo
* gnu/packages/crates-io.scm (rust-hashbrown-0.5): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-rustc-std-workspace-alloc-1.0.John Soo
* gnu/packages/crates-io.scm (rust-rustc-std-workspace-alloc-1.0): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-regex-syntax-0.6: Update to 0.6.13.John Soo
* gnu/packages/crates-io.scm (rust-regex-syntax-0.6): Update to 0.6.13. [arguments]: Remove rust-ucd-util-0.1 from cargo-inputs. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-serde-derive-1.0: Update to 1.0.104.John Soo
* gnu/packages/crates-io.scm (rust-serde-derive-1.0): Update it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-argon2rs-0.2.John Soo
* gnu/packages/crates-io.scm (rust-argon2rs-0.2): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-term-size-0.3.John Soo
* gnu/packages/crates-io.scm (rust-term-size-0.3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-term-size-1.0.John Soo
* gnu/packages/crates-io.scm (rust-term-size-1.0): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-redox-users-0.3.John Soo
* gnu/packages/crates-io.scm (rust-redox-users-0.3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-blake2-rfc-0.2.John Soo
* gnu/packages/crates-io.scm (rust-blake2-rfc-0.2): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-dirs-sys-0.3.John Soo
* gnu/packages/crates-io.scm (rust-dirs-sys-0.3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-serde-yaml-0.8: Update to 0.8.11.John Soo
* gnu/packages/crates-io.scm (rust-serde-yaml-0.8): Update to 0.8.11. [arguments]: Remove rust-version-sync-0.8 from cargo-development-inputs. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-serde-json-1.0: Update to 1.0.44.John Soo
* gnu/packages/crates-io.scm (rust-serde-json-1.0): Update to 1.0.44. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-serde-cbor-0.10: Update to 0.10.2.John Soo
* gnu/packages/crates-io.scm (rust-serde-cbor-0.10): Update 0.10.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: rust-serde-1.0: Update to 1.0.104.John Soo
* gnu/packages/crates-io.scm (rust-serde-1.0): Update to 1.0.104. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-dirs-2.0.John Soo
* gnu/packages/crates-io.scm (rust-dirs-2.0): New variable. (rust-dirs-1.0): Inherit from rust-dirs-2.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-regex-1.3.John Soo
* gnu/packages/crates-io.scm (rust-regex-1.3): New variable. (rust-regex-1.1): Inherit from rust-regex-1.3. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: Add rust-handlebars-2.0.John Soo
* gnu/packages/crates-io.scm (rust-handlebars-2.0): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-21gnu: upower: Install 'dbus-1/system.d/org.freedesktop.UPower.conf' to etc/.Ludovic Courtès
Fixes <https://bugs.gnu.org/39203>. Reported by Jesse Gibbons <jgibbons2357@gmail.com>. * gnu/packages/gnome.scm (upower)[source]: Add 'modules' and 'snippet'.
2020-01-21gnu: Use HTTPS for (gnu packages bioinformatics) home pages.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics (bamm, ribodiff, python-biopython) (discrover, hisat, hisat2, htseq, fastqc, htslib, python2-pbcore, roary) (sortmerna, r-qtl, multiqc, r-deseq, r-fastseg, sambamba, trim-galore) (gess, kentutils, bismark, kallisto, sailfish, python-hicexplorer) (pplacer, python2-checkm-genome, r-velocyto)[home-page]: Use HTTPS.
2020-01-21gnu: r-gage: Update home page.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (r-gage)[home-page]: Update.
2020-01-21gnu: sra-tools: Update home page.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (sra-tools)[home-page]: Update.
2020-01-21gnu: raxml: Update home page.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (raxml)[home-page]: Update.
2020-01-21gnu: prodigal: Update home page.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (prodigal)[home-page]: Use source code repository as home page.
2020-01-21gnu: miso: Update home page.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (miso)[home-page]: Update.
2020-01-21gnu: grit: Update home page.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (grit)[home-page]: Use source code repository as home page.
2020-01-21gnu: express-beta-diversity: Update home page.Tobias Geerinckx-Rice
The original is not coming back: <https://github.com/dparks1134/ExpressBetaDiversity/issues/11>. * gnu/packages/bioinformatics.scm (express-beta-diversity)[home-page]: Use source code repository as home page.
2020-01-21gnu: dendropy: Update home page.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (dendropy)[home-page]: Update.
2020-01-21gnu: ocaml-markup: Update to 0.8.2.Julien Lepiller
gnu/packages/ocaml.scm (ocaml-markup): Update to 0.8.2.
2020-01-21gnu: ocaml-lwt: Update to 5.1.1.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-lwt): update to 5.1.1.
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