aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages
AgeCommit message (Collapse)Author
2021-02-01gnu: python-hyperkitty: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/mail.scm (python-hyperkitty) [phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: graphite2: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/fontutils.scm (graphite2)[arguments]: Remove field.
2021-02-01gnu: python-django-url-filter: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-url-filter) [phases]: Delete trailing #t. {check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-django-statici18n: Do not read PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-statici18n) [phases]{check}: Do not read PYTHONPATH from environment. Do not set build/lib explicitly (the install site path is already in the Guix PYTHONPATH).
2021-02-01gnu: python-django-appconf: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-appconf) [phases]{check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-django-sortedm2m: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-sortedm2m) [phases]{check}: Do not alter PYTHONPATH. Remove trailing #t.
2021-02-01gnu: python-django-pipeline: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-pipeline): Remove trailing #t. [phases]{check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-django-contact-form: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django-contact-form): [phases]{check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-pytest-django: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django): Remove trailing #t. [phases]{check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-django: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/django.scm (python-django): Remove trailing #t. [phases]{pre-check,check}: Do not alter PYTHONPATH.
2021-02-01gnu: python-rpy2: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/statistics.scm (python-rpy2)[arguments]: Remove the '#:modules' argument. [phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: ghmm: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/machine-learning.scm (ghmm): Remove trailing #t. [phases]: Do not reorder the check phase after the install phase. {fix-PYTHONPATH}: Remove phase.
2021-02-01gnu: tensorflow: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/machine-learning.scm (tensorflow)[phases]: Delete trailing #t. {fix-python-build}: Do not alter PYTHONPATH.
2021-02-01gnu: python-libtmux: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/tmux.scm (python-libtmux)[phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: python-pyhamcrest: Update to 2.0.2.Maxim Cournoyer
* gnu/packages/check.scm (python-pyhamcrest): Update to 2.0.2. [propagated-inputs]: Remove python-six. [phases]{check}: Do not set PYTHONPATH. (python2-pyhamcrest): Remove variable.
2021-02-01gnu: behave: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/check.scm (behave)[arguments]: Remove the '#:phases' argument. [propagated-inputs]: Remove python-importlib-metadata and python-six.
2021-02-01gnu: ganeti: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/virtualization.scm (ganeti): Remove trailing #t. [phases]{build-bash-completions}: Do not set PYTHONPATH. {pre-check}: Do patch PYTHONPATH from script. {wrap}: Use the new GUIX_PYTHONPATH environment variable.
2021-02-01gnu: linkchecker: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/web.scm (linkchecker): Remove trailing #t. [phases]: Do not reorder the check phase after the install phase. {check}: Do not set PYTHONPATH.
2021-02-01gnu: python-cffi: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/libffi.scm (python-cffi): Remove trailing #t. [phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: python-xmlschema: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/xml.scm (python-xmlschema): Remove trailing #t. [phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: python-loompy: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python-loompy) [phases]{check}: Do not set PYTHONPATH.
2021-02-01gnu: python-scanpy: Do not set PYTHONPATH.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python-scanpy)[phases] {check}: Do not set PYTHONPATH.
2021-02-01gnu: python-screed: Adjust following Python build system changes.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python-screed)[arguments]: Remove field, no longer necessary.
2021-02-01gnu: bamm: Update following changes to the Python build system.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (bamm): Delete trailing #t. [phases]{check}: Override rather than delete phase. Remove trailing #t. {post-install-check}: Delete phase. {wrap-executable}: Also wrap with the new GUIX_PYTHONPATH.
2021-02-01gnu: python-pysam: Adjust following Python build system changes.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Remove the '#:modules' argument. [phases]: Remove trailing #t. {check}: Do not manually set PYTHONPATH.
2021-02-01gnu: python-pybedtools: Streamline following Python build system changes.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (python-pybedtools): Remove trailing #t. [phases]{check}: Do not manually set PYTHONPATH. [arguments]: Remove the '#:modules' argument.
2021-02-01gnu: intel-xed: Adjust build phase.Maxim Cournoyer
* gnu/packages/assembly.scm (intel-xed) [phases]: Delete trailing #t. {build}: Do not read PYTHONPATH from environment.
2021-02-01gnu: solaar: Do not read PYTHONPATH from environment.Maxim Cournoyer
* gnu/packages/admin.scm (solaar) [phases]{setenv-PATH}: Do not read PYTHONPATH from environment.
2021-02-01gnu: python2-virtualenv: Fix build.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-virtualenv)[arguments]{phases}: Remove argument.
2021-02-01gnu: python2-packaging-bootstrap: Add missing dependencyLars-Dominik Braun
* gnu/packages/python-xyz.scm (python2-packaging-bootstrap) [propagated-inputs]: Add python2-six-bootstrap.
2021-02-01gnu: python-traceback2: Add missing dependency.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-traceback2)[propagated-inputs]: Add python-six.
2021-02-01gnu: python-packaging-bootstrap: Remove dependency.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-packaging-bootstrap) [arguments]: Remove dependency from setup.py, which we do not provide for this variant.
2021-02-01gnu: python-automat: Remove broken console script.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-automat) [arguments]: Patch setup.py.
2021-02-01gnu: python-twisted: Remove broken console scripts.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-twisted) [arguments]: Patch setup.py.
2021-02-01gnu: python-idna-ssl: Add missing input.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-idna-ssl)[propagated-inputs]: Add python-idna.
2021-02-01gnu: python-traitlets: Add missing input.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-traitlets)[propagated-inputs]: Add python-six.
2021-02-01gnu: python-black: Remove blackd.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-black) [arguments]: Add new phase to prevent installation of blackd.
2021-02-01gnu: python-websockets: Fix Python package name.Lars-Dominik Braun
* gnu/packages/python-web.scm (python-websockets) [arguments]: Add new phase to fix package name.
2021-02-01gnu: python-slugify: Add missing input.Lars-Dominik Braun
* gnu/packages/python-web.scm (python-slugify) [propagated-inputs]: Add python-text-unidecode.
2021-02-01gnu: python-pyfakefs: Disable unreliable testLars-Dominik Braun
* gnu/packages/check.scm (python-pyfakefs) [arguments]: Add new phase to skip single test.
2021-02-01gnu: python-pytest-pep8: Fix package.Lars-Dominik Braun
* gnu/packages/check.scm (python-pytest-pep8)[arguments]: Remove dependency on pytest-cache and add proper 'check phase.
2021-02-01gnu: python-fixtures-bootstrap: Do not sanity check.Lars-Dominik Braun
* gnu/packages/check.scm (python-fixtures-bootstrap) [phases]{sanity-check}: Delete.
2021-02-01gnu: python-pytest-xdist: Add missing input, relax pytest requirement.Lars-Dominik Braun
* gnu/packages/check.scm: (python-pytest-xdist) [arguments]: Relax pytest version requirements. [propagated-inputs]: Add python-pytest-forked.
2021-02-01build/python: Add a sanity check phase.Lars-Dominik Braun
Add a new phase validating the usability of installed Python packages. * gnu/packages/aux-files/python/sanity-check.py: New file. * Makefile.am (AUX_FILES): Register it. * guix/build-system/python.scm (sanity-check.py): New variable. (lower): Add the script as an implicit input. * guix/build/python-build-system.scm: Remove trailing #t. (sanity-check): New phase. (%standard-phases): Use it. * tests/builders.scm: (make-python-dummy) (dummy-ok, dummy-dummy-nosetuptools, dummy-fail-requirements) (dummy-fail-import, dummy-fail-console-script): New variables. ("python-build-system: dummy-ok") ("python-build-system: dummy-dummy-nosetuptools") ("python-build-system: dummy-fail-requirements") ("python-build-system: dummy-fail-import") ("python-build-system: dummy-fail-console-script"): Add tests.
2021-02-01gnu: python: Replace PYTHONPATH by GUIX_PYTHONPATH.Maxim Cournoyer
Using PYTHONPATH as a mean to discover the Python packages had the following issues: 1. It is not versioned, so different versions of Python would clash if installed in a shared profile. 2. It would interfere with the host Python site on foreign distributions, sometimes preventing a a user to login their GDM session (!). 3. It would take precedence over user installed Python packages installed through pip. 4. It would leak into Python virtualenvs, which are supposed to create isolated Python environments. This changes fixes the above issues by making use of a sitecustomize.py module. The newly introduced GUIX_PYTHONPATH environment variable is read from the environment, filtered for the current Python version of the interpreter, and spliced in 'sys.path' just before Python's own site location, which provides the expected behavior. * gnu/packages/aux-files/python/sitecustomize.py: New file. * Makefile.am: Register it. * gnu/packages/python.scm (customize-site) (guix-pythonpath-search-path): New procedures. (python-2.7)[phases]{install-sitecustomize.py}: New phase. [native-inputs]{sitecustomize.py}: New input. [native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH. (python-3.9)[native-search-paths]: Likewise. [phases]{install-sitecustomize}: Override with correct version. [native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH. * gnu/packages/commencement.scm (python-boot0): [phases]{install-sitecustomize}: Likewise. [native-inputs]{sitecustomize.py}: New input. [native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH. * guix/build/python-build-system.scm (site-packages): Do not add a trailing '/'. squash! gnu: python: Replace PYTHONPATH by GUIX_PYTHONPATH.
2021-01-31gnu: pixman: Update to 0.40.0.Raghav Gururajan
* gnu/packages/xdisorg.scm (pixman) [version]: Update to 0.40.0. [license]: Change from X11 to expat. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-01-31gnu: pixman: Enable some features.Raghav Gururajan
* gnu/packages/xdisorg.scm (pixman) [arguments] Pass --enable-timers and --enable-gnuplot to #:configure-flags. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-01-31gnu: openjpeg: Enable tests.Raghav Gururajan
* gnu/packages/image.scm (openjpeg)[arguments]: Enable the test suite. Pass -DBUILD_UNIT_TESTS, -DBUILD_TESTING, and -DOPJ_DATA_ROOT to #:configure-flags. Add a new 'disable-failing-tests' phase. [native-inputs]: Add openjpeg-data. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-01-29gnu: fontconfig: Update to 2.13.93.Maxim Cournoyer
* gnu/packages/patches/fontconfig-hurd-path-max.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Un-register file. * gnu/packages/fontutils.scm (fontconfig)[source] {uri}: Use the .tar.xz archive. {patches}: Remove field. The patch was merged upstream. [native-inputs]: Add python-minimal. [phases]{skip-problematic-tests}: Add phase. [configure-flags]: Do not set PYTHON to false. * gnu/packages/fontutils.scm (fontconfig-with-documentation) [native-inputs]: Add docbook-utils.
2021-01-29gnu: fontconfig-with-documentation: New variable.Maxim Cournoyer
In what will become fontconfig 2.14, the complete documentation of fontconfig requires multiple dependencies that would be problematic to add to this core package; instead, keep the 'fontconfig' variable package lean and create a new 'fontconfig-with-documentation' package that will be known as "fontconfig" to the users. * gnu/packages/fontutils.scm (fontconfig): Hide package. [outputs]: Remove doc output. [configure-flags]: Add "--disable-docs" argument. [phases]{remove-pdf-files}: Remove phase. {move-man-sections}: Move to... (fontconfig-with-documentation): ... this new variable with a doc output.
generated by cgit