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2023-05-10gnu: Add python-pytorch-lightning....* gnu/packages/machine-learning.scm (python-pytorch-lightning): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-jsonargparse....* gnu/packages/python-xyz.scm (python-jsonargparse): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-docstring-parser....* gnu/packages/python-xyz.scm (python-docstring-parser): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-starsessions-for-pytorch-lightning....* gnu/packages/python-web.scm (python-starsessions-for-pytorch-lightning): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-typeshed-client....* gnu/packages/python-xyz.scm (python-typeshed-client): New variable. Ricardo Wurmus
2023-05-10gnu: python-torchvision: Update to 0.15.2....* gnu/packages/machine-learning.scm (python-torchvision): Update to 0.15.2. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase. Ricardo Wurmus
2023-05-10gnu: python-arrow: Update to 1.2.3....* gnu/packages/time.scm (python-arrow): Update to 1.2.3. Ricardo Wurmus
2023-05-10gnu: Add python-types-requests....* gnu/packages/python-xyz.scm (python-types-requests): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-types-urllib3....* gnu/packages/python-xyz.scm (python-types-urllib3): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-fastapi-for-pytorch-lightning....* gnu/packages/python-web.scm (python-fastapi-for-pytorch-lightning): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-starlette-for-fastapi-0.88....* gnu/packages/python-web.scm (python-starlette-for-fastapi-0.88): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-inquirer....* gnu/packages/machine-learning.scm (python-inquirer): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-readchar....* gnu/packages/machine-learning.scm (python-readchar): New variable. Ricardo Wurmus
2023-05-10gnu: python-scikit-optimize: Fix build with newer numpy and sklearn....* gnu/packages/patches/python-scikit-optimize-1148.patch, gnu/packages/patches/python-scikit-optimize-1150.patch: New patches. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/python-science.scm (python-scikit-optimize)[source]: Fetch with git and apply patches. Ricardo Wurmus
2023-05-10gnu: Add python-dateutils....* gnu/packages/time.scm (python-dateutils): New variable. Ricardo Wurmus
2023-05-10gnu: python-pillow-simd: Update to 9.2.0....* gnu/packages/python-xyz.scm (python-pillow-simd): Update to 9.2.0. Ricardo Wurmus
2023-05-10gnu: python-blessed: Update to 1.20.0....* gnu/packages/python-xyz.scm (python-blessed): Update to 1.20.0. [source]: Simplify snippet. [build-system]: Use pyproject-build-system. [arguments]: Use test-flags to avoid pytest-coverage; remove custom 'check phase. [propagated-inputs]: Remove python-jinxed python-six. [native-inputs]: Remove python-mock. Ricardo Wurmus
2023-05-10gnu: Add python-torchmetrics....* gnu/packages/machine-learning.scm (python-torchmetrics): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-types-setuptools....* gnu/packages/python-xyz.scm (python-types-setuptools): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-mir-eval....* gnu/packages/python-xyz.scm (python-mir-eval): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-lightning-utilities....* gnu/packages/machine-learning.scm (python-lightning-utilities): New variable. Ricardo Wurmus
2023-05-10gnu: Add python-lightning-cloud....* gnu/packages/machine-learning.scm (python-lightning-cloud): New variable. Ricardo Wurmus
2023-05-10gnu: python-pytorch-for-r-torch: Define as alias for python-pytorch....* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Remove duplicate definition. Ricardo Wurmus
2023-05-10gnu: python-traitlets: Update to 5.9.0....* gnu/packages/python-xyz.scm (python-traitlets): Update to 5.9.0. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-hatchling, python-pre-commit, and python-pytest-mock. [arguments]: Remove custom 'check phase. Ricardo Wurmus
2023-05-10gnu: Add python-deepdiff....* gnu/packages/python-xyz.scm (python-deepdiff): New variable. Ricardo Wurmus
2023-05-10gnu: python-pytorch: Update to 1.13.1....* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.13.1. [source]: Update snippet. Ricardo Wurmus
2023-05-10gnu: python-shiboken-2: Add fix for python-pyside-2....* gnu/packages/qt.scm (python-shiboken-2)[arguments]: Add 'workaround-importlib-error' phase. Guillaume Le Vaillant
2023-05-10gnu: guile-fibers-next: Update to 1.2.0-2.745bd40....* gnu/packages/guile-xyz.scm (guile-fibers-next): Update to 1.2.0-2.745bd40. Signed-off-by: Christopher Baines <mail@cbaines.net> Christopher Baines
2023-05-10gnu: guix-build-coordinator: Update to 0-81.3f6473c....* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-81.3f6473c. Christopher Baines
2023-05-10gnu: guile-gnutls: Update to 3.7.12....* gnu/packages/tls.scm (guile-gnutls): Update to 3.7.12. [source]: Switch to a tarball, to avoid a circular dependency if guile-gnutls is used in git-download. [arguments]: Remove phase changes for building from Git. [native-inputs]: Remove autoconf and automake as they're now unnecessary. Signed-off-by: Christopher Baines <mail@cbaines.net> Christopher Baines
2023-05-10gnu: cuirass: Update to 4a8a4bc....Fixes <https://issues.guix.gnu.org/63389>. * gnu/packages/ci.scm (cuirass): Update to 4a8a4bc. [arguments]: Remove 'set-PATH-for-tests' and 'disable-remote-tests' phases, which are unnecessary. In 'wrap-program' phase, check for "guile-gnutls". [inputs]: Replace GUILE-FIBERS with GUILE-FIBERS-1.1 and GNUTLS with GUILE-GNUTLS. Ludovic Courtès
2023-05-10gnu: emacs-gerbil-mode: Move to scheme.scm....This fixes a bug due to a top-level circular reference: $ guix show scheme48 [...] ice-9/boot-9.scm:1685:16: In procedure raise-exception: error: gerbil: unbound variable * gnu/packages/emacs-xyz.scm (emacs-gerbil-mode): Move to... * gnu/packages/scheme.scm (emacs-gerbil-mode): ... here. Ludovic Courtès
2023-05-09gnu: icecat: Update to 102.11.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2023-32205, CVE-2023-32206, CVE-2023-32207, CVE-2023-32211, CVE-2023-32212, CVE-2023-32213, CVE-2023-32214, and CVE-2023-32215. * gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. Mark H Weaver
2023-05-09gnu: Add python-clinguin....* gnu/packages/potassco.scm (python-clinguin): New variable. Liliana Marie Prikler
2023-05-09gnu: python-fastapi: Do not delete tests, and add orjson....* gnu/packages/python-web.scm (python-fastapi)[arguments]: Remove all custom phases; ignore two test files. [propagated-inputs]: Add python-orjson. Ricardo Wurmus
2023-05-09gnu: Add python-fastapi....* gnu/packages/python-web.scm (python-fastapi): New variable. Liliana Marie Prikler
2023-05-09gnu: python-databases: Revise description....* gnu/packages/databases.scm (python-databases)[synopsis]: Spell out “Asynchronous”. [description]: Mention that it's a wrapper around other libraries using SQLAlchemy. Liliana Marie Prikler
2023-05-09gnu: python-databases: Update to 0.7.0....* gnu/packages/databases.scm (python-databases): Update to 0.7.0. Liliana Marie Prikler
2023-05-09gnu: python-aiosqlite: Update to 0.18.0....* gnu/packages/databases.scm (python-aiosqlite): Update to 0.18.0. [source]: Use git-fetch and git-reference. [build-system]: Use pyproject-build-system. [arguments]: Adjust accordingly. [propagated-inputs]: Remove. [native-inputs]: Remove python-aiounittest. Add python-flit-core, python-coverage and python-mypy. Liliana Marie Prikler
2023-05-09gnu: python-aiomysql: Update to 0.1.1....* gnu/packages/databases.scm (python-aiomysql): Update to 0.1.1. [build-system]: Change to pyproject-build-system. Liliana Marie Prikler
2023-05-09gnu: python-pymysql: Update to 1.0.2....* gnu/packages/databases.scm (python-pymysql): Update to 1.0.2. Liliana Marie Prikler
2023-05-09gnu: python-sqlalchemy: Use pyproject-build-system....* gnu/packages/databases.scm (python-sqlalchemy)[arguments]: Replace custom 'check phase with #:test-flags. [build-system]: Use pyproject-build-system. Ricardo Wurmus
2023-05-09gnu: python-sqlalchemy: Update to 1.4.42....* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.42. Liliana Marie Prikler
2023-05-09gnu: python-starlette: Update to 0.25.0....* gnu/packages/python-web.scm (python-starlette): Update to 0.25.0. [source]: Switch to git-fetch and git-reference. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-hatchling, python-httpx, python-pytest, and python-typing-extensions-next. Liliana Marie Prikler
2023-05-09Revert "gnu: rust-bootstrap: Remove aarch64 as a supported architecture."...This reverts commit c56d57110de1412d3529940d4f856611d123da66. rust-bootstrap *IS* supported on aarch64-linux, and the build farm will catch up eventually. Efraim Flashner
2023-05-09gnu: r-scran: Update to 1.28.1....* gnu/packages/bioconductor.scm (r-scran): Update to 1.28.1. Ricardo Wurmus
2023-05-09gnu: r-scuttle: Update to 1.10.1....* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.10.1. Ricardo Wurmus
2023-05-09gnu: r-chromvar: Update to 1.22.1....* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.22.1. Ricardo Wurmus
2023-05-09gnu: r-hdf5array: Update to 1.28.1....* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.28.1. [propagated-inputs]: Add r-s4arrays. Ricardo Wurmus
2023-05-09gnu: r-s4vectors: Update to 0.38.1....* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.38.1. Ricardo Wurmus