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2020-03-24gnu: Add python-xattr....* gnu/packages/python-xyz.scm (python-xattr): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Tanguy Le Carrour
2020-03-24gnu: python-fakeredis: Update to 1.2.1....* gnu/packages/databases.scm (python-fakeredis): Update to 1.2.1. [propagated-inputs]: Add python-sortedcontainers. Signed-off-by: Leo Famulari <leo@famulari.name> Tanguy Le Carrour
2020-03-24gnu: python-clikit: Update to 0.4.2....* gnu/packages/python-xyz.scm (python-clikit): Update to 0.4.2. Signed-off-by: Leo Famulari <leo@famulari.name> Tanguy Le Carrour
2020-03-24gnu: python-sortedcontainers: Add missing propagated-inputs....* gnu/packages/python-xyz.scm (python-sortedcontainers): [propagated-inputs] Add python-appdirs, python-distlib, python-filelock, python-importlib-metadata and python-six. Signed-off-by: Leo Famulari <leo@famulari.name> Tanguy Le Carrour
2020-03-24gnu: python-cachecontrol: Add missing propagated-input....* gnu/packages/python-web.scm (python-cachecontrol): [propagated-inputs]: Add python-msgpack. Signed-off-by: Leo Famulari <leo@famulari.name> Tanguy Le Carrour
2020-03-24gnu: python-msgpack: Update to 1.0.0....* gnu/packages/python-xyz.scm (python-msgpack): Update to 1.0.0. (python-msgpack-transitional)[version,source]: New fields to avoid updating this package. Signed-off-by: Leo Famulari <leo@famulari.name> Tanguy Le Carrour
2020-03-24gnu: python-pastel: Update to 0.2.0....* gnu/packages/graphics.scm (python-pastel): Update to 0.2.0. Signed-off-by: Leo Famulari <leo@famulari.name> Tanguy Le Carrour
2020-03-24gnu: python-jsonschema: Update to 3.2.0....* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.2.0. [propagated-inputs]: Add python-importlib-metadata. [arguments]: Use add-installed-pythonpath to make a test pass. Signed-off-by: Leo Famulari <leo@famulari.name> Tanguy Le Carrour
2020-03-24gnu: python-pexpect: Update to 4.8.0....* gnu/packages/python-xyz.scm (python-pexpect): Update to 4.8.0. [arguments]: Disable failing test. Signed-off-by: Leo Famulari <leo@famulari.name> Tanguy Le Carrour
2020-03-24gnu: perl-mail-sendmail: Add line above definition....* gnu/packages/perl.scm (perl-mail-sendmail): Add line. Paul Garlick
2020-03-24gnu: Add perl-mail-sendmail....* gnu/packages/perl.scm (perl-mail-sendmail): New variable. Paul Garlick
2020-03-24gnu: Add Docusign API Python client....* gnu/packages/python-xyz.scm (python-docusign-esign): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Josh Marshall
2020-03-24gnu: automake: Add version 1.16.2....* gnu/packages/autotools.scm (automake-1.16.2): New variable. Ludovic Courtès
2020-03-24gnu: GHC: Enable RUNPATH validation....* gnu/packages/haskell.scm (ghc-7, ghc-8.0, ghc-8.4)[arguments]: Remove #:validate-runpath?. Marius Bakke
2020-03-24gnu: ghc@8.0: Remove obsolete patch....* gnu/packages/patches/ghc-dont-pass-linker-flags-via-response-files.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/haskell.scm (ghc-8.0)[source](patches): Remove it. Marius Bakke
2020-03-24gnu: ghc: Really disable test that fails with glibc 2.30 and later....This follows up commit 2e9c43aa9adac2bd6bcf92373d1cf9f322afa5a3, which was incomplete. Fixes <https://bugs.gnu.org/39358>. * gnu/packages/patches/ghc-testsuite-dlopen-pie.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Also use tabs instead of spaces on surrounding patches. * gnu/packages/haskell.scm (ghc-8.6)[native-inputs]: Add patch for "ghc-testsuite". [arguments]: Remove incomplete workaround for the same issue. Marius Bakke
2020-03-24gnu: Add guile3.0-semver....* gnu/packages/guile-xyz.scm (guile3.0-semver): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Martin Becze
2020-03-24gnu: nano: Update to 4.9....* gnu/packages/nano.scm (nano): Update to 4.9. Efraim Flashner
2020-03-24gnu: cross-gcc: Add a "lib" output....Add a "lib" output to cross-gcc. This requires an upstream GCC patch adding support for --with-toolexeclibdir configure option. This option allows to install cross-built GCC libraries in a specific location. This also fixes the computation of TOOLDIR_BASE_PREFIX, that fails when /gnu/store/... directories are involved. * gnu/packages/patches/gcc-7-cross-toolexeclibdir.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/cross-base.scm (cross-gcc)[source]: Apply it, [outputs]: add a "lib" output, (cross-gcc-snippet): fix TOOLDIR_BASE_PREFIX. Mathieu Othacehe
2020-03-24gnu: Add qgis....* gnu/packages/geo.scm (qgis): New variable. Co-authored-by: Wiktor Żelazny <wzelazny@vurv.cz> Co-authored-by: Arun Isaac <arunisaac@systemreboot.net> Guillaume Le Vaillant
2020-03-24gnu: Add saga....* gnu/packages/geo.scm (saga): New variable. Guillaume Le Vaillant
2020-03-24gnu: Add grass....* gnu/packages/geo.scm (grass): New variable. Guillaume Le Vaillant
2020-03-24gnu: Add python-owslib....* gnu/packages/python-xyz.scm (python-owslib): New variable. Guillaume Le Vaillant
2020-03-24gnu: r-harmony: Update to 0.1....* gnu/packages/cran.scm (r-harmony): Update to 0.1. [native-inputs]: Add autoconf. Ricardo Wurmus
2020-03-24gnu: r-shiny: Update to 1.4.0.2....* gnu/packages/cran.scm (r-shiny): Update to 1.4.0.2. Ricardo Wurmus
2020-03-24gnu: r-multiassayexperiment: Update to 1.12.5....* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-24gnu: r-bigpint: Update to 1.2.2....* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-24gnu: r-biosigner: Update to 1.14.4....* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4. Ricardo Wurmus
2020-03-24gnu: r-gosemsim: Update to 2.12.1....* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-24gnu: r-tximport: Update to 1.14.2....* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.2. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-24gnu: r-caret: Update to 6.0-86....* gnu/packages/cran.scm (r-caret): Update to 6.0-86. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-24gnu: r-batchtools: Update to 0.9.13....* gnu/packages/cran.scm (r-batchtools): Update to 0.9.13. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-24gnu: r-mcmc: Update to 0.9-7....* gnu/packages/cran.scm (r-mcmc): Update to 0.9-7. Ricardo Wurmus
2020-03-24gnu: r-proc: Update to 1.16.2....* gnu/packages/cran.scm (r-proc): Update to 1.16.2. Ricardo Wurmus
2020-03-24gnu: r-xgboost: Update to 1.0.0.1....* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-24gnu: r-radiant-data: Update to 1.3.4....* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.4. [propagated-inputs]: Remove r-gridextra; add r-mass, r-patchwork, and r-randomizr. Ricardo Wurmus
2020-03-24gnu: r-patchwork: Update to 1.0.0....* gnu/packages/cran.scm (r-patchwork): Update to 1.0.0. [source]: Fetch from CRAN. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-24gnu: r-igraph: Update to 1.2.5....* gnu/packages/graph.scm (r-igraph): Update to 1.2.5. Ricardo Wurmus
2020-03-24gnu: r-robustbase: Update to 0.93-6....* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-6. Ricardo Wurmus
2020-03-24gnu: r-hmisc: Update to 4.4-0....* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-0. Ricardo Wurmus
2020-03-24gnu: r-pkgmaker: Update to 0.31.1....* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.31.1. Ricardo Wurmus
2020-03-24gnu: r-dt: Update to 0.13....* gnu/packages/statistics.scm (r-dt): Update to 0.13. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-24gnu: r-locfit: Update to 1.5-9.2....* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.2. Ricardo Wurmus
2020-03-24gnu: Add r-randomizr....* gnu/packages/cran.scm (r-randomizr): New variable. Ricardo Wurmus
2020-03-24gnu: sbcl: Increase maximum heap size to 2Gb....* gnu/packages/lisp.scm (sbcl)[arguments]: Add the "--dynamic-space-size=2Gb" option in the build phase. Guillaume Le Vaillant
2020-03-23gnu: dialog: Update to 1.3-20200228....* gnu/packages/ncurses.scm (dialog): Update to 1.3-20200228. Signed-off-by: Leo Famulari <leo@famulari.name> Michael Rohleder
2020-03-23gnu: Git: Update to 2.26.0....* gnu/packages/version-control.scm (git): Update to 2.26.0. [arguments]: Adjust the 'install-credential-netrc' phase to upstream changes. Leo Famulari
2020-03-23Revert "gnu: youtube-dl: Add 'ffmpeg' as input."...This reverts commit 4233e74b39635d5ef4dde204ecc26dcc894d9467. Mathieu Othacehe
2020-03-23gnu: Mutt: Update to 1.13.4....* gnu/packages/mail.scm (mutt): Update to 1.13.4. [source]: Prefer HTTPS URL and replace FTP URL with HTTP. Leo Famulari
2020-03-23gnu: sord: Add pcre to inputs....* gnu/packages/rdf.scm (sord)[inputs]: Add pcre needed for sord_validate. Alexandros Theodotou
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