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2021-04-08Merge branch 'master' into stagingMaxim Cournoyer
Conflicts: .guix-authorizations gnu/ci.scm gnu/packages/base.scm gnu/packages/databases.scm gnu/packages/gnome.scm gnu/packages/gtk.scm gnu/packages/imagemagick.scm gnu/packages/password-utils.scm gnu/packages/python-xyz.scm gnu/packages/web-browsers.scm
2021-04-08gnu: r-genomicfeatures: Update to 1.42.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.3.
2021-04-08gnu: r-gviz: Update to 1.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.34.1.
2021-04-08gnu: r-universalmotif: Update to 1.8.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.4.
2021-04-08gnu: r-rsubread: Update to 2.4.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.3.
2021-04-08gnu: r-chippeakanno: Update to 3.24.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.2. [propagated-inputs]: Add r-dplyr.
2021-04-08gnu: r-diffbind: Update to 3.0.15.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.15.
2021-04-08gnu: r-genomeinfodb: Update to 1.26.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.6.
2021-04-08gnu: r-delayedarray: Update to 0.16.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.16.3.
2021-04-08gnu: Add texlive-mweights.Paul Garlick
* gnu/packages/tex.scm: New variable.
2021-04-08gnu: axoloti-runtime: Simplify build.Morgan Smith
* gnu/packages/axoloti.scm (axoloti-runtime)[arguments]: Remove unnecessary environment variable assignments in custom 'build phase. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-08gnu: gcc-arm-none-eabi: Fix C++ header location.Morgan Smith
Previously the C++ headers where installed in the include folder, overwriting some C headers. * gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9) [native-search-paths]: Add C++ header locations. (gcc-arm-none-eabi-7-2018-q2-update)[native-search-paths]: Add C++ header locations. (make-libstdc++-arm-none-eabi)[arguments]: Change C++ header install location to include/c++. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-04-08gnu: r-sn: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sn): Update to 2.0.0.
2021-04-08gnu: r-sfsmisc: Update to 1.1-10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-10.
2021-04-08gnu: r-e1071: Update to 1.7-6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-6. [propagated-inputs]: Add r-proxy.
2021-04-08gnu: r-xml: Update to 3.99-0.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.6.
2021-04-08gnu: r-rsqlite: Update to 2.2.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.5.
2021-04-08gnu: r-catools: Update to 1.18.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-catools): Update to 1.18.2.
2021-04-08gnu: r-dbplyr: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.1.1.
2021-04-08gnu: r-survival: Update to 3.2-10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-survival): Update to 3.2-10.
2021-04-08gnu: r-stars: Update to 0.5-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-stars): Update to 0.5-2.
2021-04-08gnu: r-lwgeom: Update to 0.2-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-6. [inputs]: Add zlib.
2021-04-08gnu: r-ragg: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ragg): Update to 1.1.2.
2021-04-08gnu: r-textshaping: Update to 0.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.3.
2021-04-08gnu: r-bbotk: Update to 0.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.2.
2021-04-08gnu: r-mlr3learners: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.4.5.
2021-04-08gnu: r-mlr3misc: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.8.0.
2021-04-08gnu: r-phangorn: Update to 2.6.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-phangorn): Update to 2.6.3. [native-inputs]: Add r-knitr.
2021-04-08gnu: r-qtl: Update to 1.48-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-qtl): Update to 1.48-1.
2021-04-08gnu: r-altmeta: Update to 3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-altmeta): Update to 3.3.
2021-04-08gnu: r-tidyposterior: Update to 0.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidyposterior): Update to 0.1.0. [propagated-inputs]: Remove r-lifecycle; add r-tune and r-workflowsets.
2021-04-08gnu: r-slider: Update to 0.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-slider): Update to 0.2.1. [propagated-inputs]: Add r-ellipsis.
2021-04-08gnu: r-yardstick: Update to 0.0.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-yardstick): Update to 0.0.8. [propagated-inputs]: Add r-vctrs.
2021-04-08gnu: r-muhaz: Update to 1.2.6.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-muhaz): Update to 1.2.6.3.
2021-04-08gnu: r-cpp11: Update to 0.2.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-cpp11): Update to 0.2.7.
2021-04-08gnu: r-spatstat: Update to 2.1-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat): Update to 2.1-0.
2021-04-08gnu: r-spatstat-linnet: Update to 2.1-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 2.1-1.
2021-04-08gnu: r-spatstat-core: Update to 2.0-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-core): Update to 2.0-0.
2021-04-08gnu: r-spatstat-geom: Update to 2.0-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.0-1. [propagated-inputs]: Remove r-spatstat-sparse.
2021-04-08gnu: r-spatstat-data: Update to 2.1-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-data): Update to 2.1-0.
2021-04-08gnu: r-spatstat-sparse: Update to 2.0-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-sparse): Update to 2.0-0.
2021-04-08gnu: r-spatstat-utils: Update to 2.1-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-utils): Update to 2.1-0.
2021-04-08gnu: r-shapforxgboost: Update to 0.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-shapforxgboost): Update to 0.1.1. [propagated-inputs]: Remove r-lightgbm. [native-inputs]: Add r-knitr.
2021-04-08gnu: r-lightgbm: Update to 3.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-lightgbm): Update to 3.2.0.
2021-04-08gnu: r-latex2exp: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-latex2exp): Update to 0.5.0. [native-inputs]: Add r-knitr.
2021-04-08gnu: r-packrat: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-packrat): Update to 0.6.0.
2021-04-08gnu: r-quanteda: Update to 3.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-quanteda): Update to 3.0.0. [propagated-inputs]: Remove r-data-table, r-digest, r-extrafont, r-ggplot2, r-ggrepel, r-jsonlite, r-network, r-proxyc, and r-sna.
2021-04-08gnu: r-shapes: Update to 1.2.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-shapes): Update to 1.2.6.
2021-04-08gnu: r-univoutl: Update to 0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-univoutl): Update to 0.3.
2021-04-08gnu: r-imager: Update to 0.42.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-imager): Update to 0.42.8.
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