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2022-04-07gnu: shepherd: Add 0.9.0.Ludovic Courtès
* gnu/packages/admin.scm (shepherd): Rename to... (shepherd-0.8): ... this. New variable. (shepherd): Define as an alias for SHEPHERD-0.8. (shepherd-0.9): New variable. (guile2.2-shepherd): Inherit from SHEPHERD-0.9 and adjust inputs accordingly.
2022-04-06gnu: lagrange: Update to 1.12.1.Efraim Flashner
* gnu/packages/web-browsers.scm (lagrange): Update to 1.12.1.
2022-04-06gnu: keepassxc: Update to 2.7.1.Efraim Flashner
* gnu/packages/password-utils.scm (keepassxc): Update to 2.7.1.
2022-04-06gnu: vim: Update to 8.2.4701.Efraim Flashner
* gnu/packages/vim.scm (vim): Update to 8.2.4701. [arguments]: Adjust custom 'skip-or-fix-failing-tests phase to skip another test.
2022-04-06gnu: python-pybtex: Update to 0.24.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pybtex): Update to 0.24.0. [native-inputs]: Remove python-nose; add python-pytest. [inputs]: Move python-latexcodec, python-pyyaml, and python-six from here... [propagated-inputs]: ...to here. [arguments]: Use pytest.
2022-04-06gnu: python-latexcodec: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-latexcodec): Update to 2.0.1. [inputs]: Move python-six from here... [propagated-inputs]: ...to here.
2022-04-06gnu: Add r-rnaseqdtu.Hong Li
* gnu/packages/bioinformatics.scm (r-rnaseqdtu): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-06gnu: Add r-stager.Hong Li
* gnu/packages/bioconductor.scm (r-stager): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-06gnu: Add r-rafalib.Hong Li
* gnu/packages/cran.scm (r-rafalib): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-05gnu: icecat: Update to 91.8.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2022-1097, CVE-2022-1196, CVE-2022-24713, CVE-2022-28281, CVE-2022-28282, CVE-2022-28285, CVE-2022-28286, and CVE-2022-28289. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes.
2022-04-05gnu: poco: Make description a full sentence.Liliana Marie Prikler
* gnu/packages/cpp.scm (poco)[description]: Expand into a full sentence.
2022-04-05gnu: u-boot-rockpro64-rk3399: Add support for booting from SCSI/SATA.Ricardo Wurmus
* gnu/packages/bootloaders.scm (u-boot-rockpro64-rk3399)[arguments]: Add 'patch-config phase to support SCSI/SATA disks. Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
2022-04-05gnu: u-boot: Update to 2022.04.Vagrant Cascadian
* gnu/packages/bootloaders.scm (u-boot): Update to 2022.01. [native-inputs]: Add gnutls, tinfo, libuuid. (u-boot-qemu-riscv64-smode): Drop custom patches. * gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Refresh patch. * gnu/packages/patches/u-boot-riscv64-fix-extlinux.patch: Remove patch, applied upstream. * gnu/local.mk (dist_patch_DATA): Update with removed patches. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-05gnu: Add ncurses-with-tinfo.Vagrant Cascadian
* gnu/packages/ncurses.scm (ncurses/tinfo): New variable.
2022-04-05gnu: l2md: Update to 9db252bc.Andrew Tropin
[[PGP Signed Part:No public key for 2208D20958C1DEB0 created at 2022-03-28T11:03:48+0200 using RSA]] * gnu/packages/mail.scm (l2md): Update to 9db252bc. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05gnu: plocate: Build with "--sharedstatedir=/var".ykonai
Current plocate package sets the --sharedstatedir to a store directory, which causes updatedb and plocate to fail by default since the store is immutable. This will set the default database path to /var/cache/plocate.db instead. * gnu/packages/search.scm (plocate): Change build options. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05gnu: phodav: Use libsoup 2 instead of libsoup 3.Leo Nikkilä
Looks like phodav requires libsoup 2. Example of failing build logs, wanting libsoup 2.4: <https://ci.guix.gnu.org/build/584454/log/raw> After swapping the dependency, tests were failing due to HOME not being writable. I added a new build phase to account for this. I also removed the start-virtual-dir-server phase which no longer seems required, the tests pass without it. * gnu/packages/gnome.scm (phodav): Fix build, tests. [inputs]: Replace libsoup 3 with libsoup 2. [arguments]<#:phases>[set-temporary-home]: New phase. [arguments]<#:phases>[start-virtual-dir-server]: Remove phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05gnu: pantheon-calculator: Update to 1.7.2.jgart
* gnu/packages/pantheon.scm (pantheon-calculator): Update to 1.7.2. [arguments]: Remove trailing boolean. [inputs]: Use guix style and add libhandy input. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05gnu: python-w3lib: Fix build.Felix Gruber
* gnu/packages/python-web.scm (python-w3lib): Fix build. [source]: Add python-w3lib-fix-test-failure.patch. [arguments]: Use pytest in the 'check phase. [native-inputs]: Add python-pytest. * gnu/packages/patches/python-w3lib-fix-test-failure.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05gnu: python-gst: Fix the concatenation of install path.Zhu Zihao
Fixes a regression introduced in a5c2e7961c21ef8620ce4cfb3569109fbd694e1e. * gnu/packages/gstreamer.scm (python-gst): [arguments]: <configure-flags>: Add missing leading slash. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05gnu: python-dotenv: Update to 0.20.0.jgart
* gnu/packages/python-xyz.scm (python-dotenv): Update to 0.20.0. [home-page]: Update home page. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05gnu: linux: Allow kconfig options to be stringsantlers
* gnu/packages/linux.scm (config->string): add a clause handling strings Allows for the declarative configuration of kconfig options which accept strings, such as CONFIG_MODULE_SIG_KEY. I've enclosed the given string in quotes, but don't do any kind of escaping. See the kernel mailing list for the current state of escaped strings upstream: https://patchwork.kernel.org/project/linux-kbuild/patch/1431003982-992-1-git-send-email-sr@denx.de/ Apologies to those with double-quotes or backslashes in their CONFIG_SYSTEM_*_KEYS. Signed-off-by: antlers <autumnalantlers@gmail.com> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05gnu: celluloid: Update to 0.23.Michael Rohleder
* gnu/packages/video.scm (celluloid): Update to 0.23. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05gnu: curlie: Update to 1.6.9Imran Iqbal
* gnu/packages/curl.scm (curlie): Update to 1.6.9 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05gnu: xmonad-next: Change #:phases to gexp.Daniel Meißner
* gnu/packages/wm.scm (xmonad-next)[arguments]: Use #$output, #$name and #$synopsis instead of %output, name and synopsis. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-05Merge branch 'wip-pyyaml'Ricardo Wurmus
2022-04-05gnu: pigx-scrnaseq: Set NUMBA_CACHE_DIR.Ricardo Wurmus
This is needed since the update of python-loompy. * gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Rename 'set-PYTHONPATH to 'set-additional-environment-variables and set NUMBA_CACHE_DIR.
2022-04-05gnu: pigx-scrnaseq: Use new inputs style.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Use plain list.
2022-04-05gnu: pigx-scrnaseq: Update to 1.1.8.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.8. [patches]: Remove. [native-inputs]: Remove. * gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-04-05gnu: r-with-tests: Update to 4.1.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.3.
2022-04-05gnu: git: Update to 2.35.1.Greg Hogan
* gnu/packages/version-control.scm (git): Update to 2.35.1. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-04-05Revert "gnu: git: Update to 2.35.1."Maxim Cournoyer
This reverts commit 223a3d7f7fdb6af9c4c090785cab15d38680e887, as it triggered thousands of rebuilds due to inadvertently touching git-minimal/fixed. Reported-by: Christopher Baines <mail@cbaines.net>
2022-04-05gnu: python-pyyaml: Update to 6.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 6.0.
2022-04-05gnu: python2-pyyaml: Detach source from python-pyyaml.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python2-pyyaml): Override source and version fields. (python-pyyaml)[properties]: Add python2-variant.
2022-04-04gnu: eyeD3: Update to 0.9.6.Leo Famulari
* gnu/packages/mp3.scm (eyed3): Update to 0.9.6. [propagated-inputs]: Add python-deprecation and python-filetype.
2022-04-04gnu: Add parole.Feng Shu
* gnu/packages/xfce.scm (parole): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04gnu: mediainfo: Update to 22.03.kiasoc5
* gnu/packages/video.scm (mediainfo): Update to 22.03. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04gnu: libmediainfo: Update to 22.03.kiasoc5
* gnu/packages/video.scm (libmediainfo): Update to 22.03. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04gnu: gtkmm: Update to 4.6.1.Zhu Zihao
* gnu/packages/gtk.scm (gtkmm): Update to 4.6.1. [propagated-inputs]: Remove atkmm because it's no longer needed. * gnu/packages/gtk.scm (pangomm): Update to 2.50.0. [propagated-inputs]: Replace 'pango' with 'pango-next'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04gnu: Add fcitx5-gtk4.Zhu Zihao
* gnu/packages/fcitx5.scm (fcitx5-gtk4): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04gnu: gtk: Update to 4.6.1.Zhu Zihao
* gnu/local.mk (dist_patch_DATA): Remove gtk-introspection-test.patch. * gnu/packages/patches/gtk-introspection-test.patch: Remove. * gnu/packages/gtk.scm (gtk): Update to 4.6.1. [source]: Remove stale patch. [arguments]<phases>: Add 'patch-rst2man' phase, correct the binary name of rst2man to 'rst2man.py' [inputs]: Add libjpeg-turbo, libpng, libtiff. [native-inputs]: Add python-docutils. [propagated-inputs]: Use pango-next. * gnu/packages/fcitx5.scm (fcitx5-gtk)[arguments]: Disable GTK4 build. <configure-flags>: Add "-DENABLE_GTK_IM_MODULE=OFF". <phases>: In phase "patch-install-prefix", Remove GTK4 code. [inputs]: Remove package gtk. [outputs]: Remove output "gtk4". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04gnu: pango 1.50: Add version 1.50.4.Zhu Zihao
* gnu/packages/gtk.scm(pango-next): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-04-04gnu: freebayes: Fix test suite.Efraim Flashner
* gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Add python.
2022-04-04gnu: smithwaterman: Use new style for phases.Efraim Flashner
* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Use list of G-Expressions.
2022-04-04gnu: smithwaterman: Fix cross-compiling.Efraim Flashner
* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Add make-flag to use cxx-for-target. Adjust custom 'patch-source and 'build-dynamic phases to use cross toolchain binaries when cross compiling. Remove trailing #t from phases.
2022-04-04gnu: marble-qt: Update to 21.12.3.Michael Rohleder
* gnu/packages/kde.scm (marble-qt): Update to 21.12.3. [inputs]: Add qtwebchannel, qtwebengine. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-04-04gnu: Add r-zoeppritz.Mădălin Ionel Patrașcu
* gnu/packages/cran.scm (r-zoeppritz): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-04gnu: Add python-bip39.Attila Lendvai
* gnu/packages/python-xyz.scm (python-bip39): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-04-04gnu: parallel: Update to 20220322.Efraim Flashner
* gnu/packages/parallel.scm (parallel): Update to 20220322.
2022-04-04gnu: stgit: Update to 1.5.Greg Hogan
* gnu/packages/version-control.scm (stgit): Update to 1.5. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
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