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2021-04-12gnu: Add r-txdb-dmelanogaster-ucsc-dm6-ensgene....* gnu/packages/bioconductor.scm (r-txdb-dmelanogaster-ucsc-dm6-ensgene): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> hli
2021-04-12gnu: Add cl-bodge-queue....* gnu/packages/lisp-xyz.scm (sbcl-bodge-queue, cl-bodge-queue, ecl-bodge-queue): New variables. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> Adam Kandur
2021-04-12gnu: hydrogen: Update to 1.0.2....* gnu/packages/music.scm (hydrogen): Update to 1.0.2. Nicolas Goaziou
2021-04-12gnu: gcc: Update gcc to 8....* gnu/packages/gcc.scm (gcc): Define as gcc-8. * gnu/packages/commencement.scm (gcc-toolchain-7): Use make-gcc-toolchain procedure. (gcc-toolchain-8): Define as gcc-toolchain. * gnu/packages/game-development (python2-renpy)[native-inputs], * gnu/packages/gnome.scm (gnome-commander)[native-inputs], * gnu/packages/wm.scm (waybar)[native-inputs]: Remove gcc-8. Efraim Flashner
2021-04-12gnu: Add openvdb....* gnu/packages/graphics.scm (openvdb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Ekaitz Zarraga
2021-04-12gnu: selinux.scm: Use cc-for-target....* gnu/packages/selinux.scm (libsepol, checkpolicy, policycoreutils) [arguments]: Don't hardcode gcc. Efraim Flashner
2021-04-12gnu: libsepol: Update to 3.2....* gnu/packages/selinux.scm (libsepol): Update to 3.2. [source]: Use git-file-name. [arguments]: Remove trailing #t. (checkpolicy,libselinux, libsemanage, secilc policycoreutils python-sepolgen)[arguments]: Same. Efraim Flashner
2021-04-12gnu: Add texlive-newtx....* gnu/packages/tex.scm: New variable. Paul Garlick
2021-04-12gnu: java-eclipse-jetty-util: Update to 9.4.39 [security fixes]....Fixes CVE-2021-28165 - jetty server high CPU when client send data length > 17408, CVE-2021-28164 - Normalize ambiguous URIs and CVE-2021-28163 - Exclude webapps directory from deployment scan. * gnu/packages/java.scm (java-eclipse-jetty-util): Update to 9.4.39. (java-eclipse-jetty-util-ajax): New variable. (java-eclipse-jetty-util, java-eclipse-jetty-io, java-eclipse-jetty-http) (java-eclipse-jetty-jmx, java-eclipse-jetty-server) (java-eclipse-jetty-security, java-eclipse-jetty-servlet) (java-eclipse-jetty-xml, java-eclipse-jetty-webapp): Disable tests. [native-inputs]: Remove test dependencies. Julien Lepiller
2021-04-12gnu: hangups: Run test suite....* gnu/packages/messaging.scm (hangups)[arguments]: Use custom 'check phase. Efraim Flashner
2021-04-12gnu: hangups: Loosen version restrictions further....* gnu/packages/messaging.scm (hangups)[arguments]: Adjust custom 'relax-dependencies phase to allow more dependency versions. Efraim Flashner
2021-04-12gnu: python-mechanicalsoup: Update to 1.0.0....* gnu/packages/python-web.scm (python-mechanicalsoup): Update to 1.0.0. [arguments]: Enable tests. [native-inputs]: Add python-pytest-flake8, python-pytest-httpbin, python-pytest-cov, python-pytest-mock, python-pytest-runner, python-requests-mock. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Ekaitz Zarraga
2021-04-12gnu: renpy: Update to 7.4.4....* gnu/packages/game-development.scm (python2-renpy): Update to 7.4.4. (python2-pygame-sdl2)[renpy-version]: Likewise. Leo Prikler
2021-04-12gnu: nginx: Enable stream module....* gnu/packages/web.scm (nginx)[arguments]: Add --with-stream option in the 'configure phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> methuselah-0
2021-04-12gnu: Add prips....gnu/packages/admin.scm (prips): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> methuselah-0
2021-04-12gnu: blis: Add deprecated aliases....Add deprecated aliases for packages removed in the parent commit. * gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): New variables. Ludovic Courtès
2021-04-12gnu: blis: Update to 0.8.1....* gnu/packages/maths.scm (make-blis): Remove internal function. Inline into ... (bliss): ... this variable. Update to 0.8.1. [native-inputs]: Add "python" and "perl". [arguments]: Adjust 'configure' phase to take advantage of new support for "configuration families" with runtime hardware detection. Select configuration automatically based on target systems, and allow "--blis-config=" in #:configure-flags to override the default. When building for x86_64, include all supported microarchetecture specializations. Add "--enable-verbose-make" configure flag for better build logs. Stop ignoring other flags from #:configure-flags. Remove explicit #:substitutable? argument: the package is now always substitutable. Add (srfi srfi-1) to #:modules. (blis/x86_64): Remove internal macro. (blis-sandybridge): Remove package: included in 'blis'. (blis-haswell): Remove package: included in 'blis'. (blis-knl): Remove package: included in 'blis'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2021-04-12gnu: monero-gui: Update to 0.17.2.0....* gnu/packages/finance.scm (monero-gui): Update to 0.17.2.0. Guillaume Le Vaillant
2021-04-12gnu: monero: Update to 0.17.2.0....* gnu/packages/finance.scm (monero): Update to 0.17.2.0. Guillaume Le Vaillant
2021-04-12gnu: newlib-nano: Fix nano lib and header paths....* gnu/packages/embedded.scm (newlib-nano-arm-none-eabi)[arguments]: Hard link library files from *.a to *_nano.a. Hard link newlib.h to a common location. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Morgan Smith
2021-04-12gnu: electron-cash: Add missing input....Fixes <https://bugs.gnu.org/47654>. * gnu/packages/finance.scm (electron-cash)[inputs]: Add python-pathvalidate. Guillaume Le Vaillant
2021-04-12gnu: Add python-pathvalidate....* gnu/packages/python-xyz.scm (python-pathvalidate): New variable. Guillaume Le Vaillant
2021-04-12gnu: Add python-allpairspy....* gnu/packages/python-check.scm (python-allpairspy): New variable. Guillaume Le Vaillant
2021-04-11gnu: Syncthing: Update to 1.15.1 [fixes CVE-2021-21404]....* gnu/packages/syncthing.scm (syncthing): Update to 1.15.1. [source]: Use bundled dependencies. [inputs]: Remove field. [arguments]: Adjust the custom 'build' and 'install' phases for 1.15.1. Signed-off-by: Leo Famulari <leo@famulari.name> Leo Famulari
2021-04-12gnu: python-cython: Update to 0.29.22....* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.22. Tobias Geerinckx-Rice
2021-04-12gnu: python-fastimport: Update to 0.9.9....* gnu/packages/python-xyz.scm (python-fastimport): Update to 0.9.9. Tobias Geerinckx-Rice
2021-04-12gnu: minetest: Update to 5.4.1....* gnu/packages/games.scm (minetest, minetest-data): Update to 5.4.1. Tobias Geerinckx-Rice
2021-04-12gnu: ghq: Update to 1.1.7....* gnu/packages/version-control.scm (ghq): Update to 1.1.7. Tobias Geerinckx-Rice
2021-04-11gnu: lagrange: Update to 1.3.2....* gnu/packages/web-browsers.scm (lagrange): Update to 1.3.2. Tobias Geerinckx-Rice
2021-04-11gnu: irssi: Update to 1.2.3....* gnu/packages/irc.scm (irssi): Update to 1.2.3. Tobias Geerinckx-Rice
2021-04-11gnu: edgar: Update to 1.34....* gnu/packages/games.scm (edgar): Update to 1.34. Tobias Geerinckx-Rice
2021-04-11gnu: libime: Update to 1.0.6....* gnu/packages/fcitx5.scm (libime): Update to 1.0.6. Tobias Geerinckx-Rice
2021-04-11gnu: acpica: Update to 20210331....* gnu/packages/admin.scm (acpica): Update to 20210331. Tobias Geerinckx-Rice
2021-04-11gnu: python-skyfield: Update to 1.38....* gnu/packages/astronomy.scm (python-skyfield): Update to 1.38. Tobias Geerinckx-Rice
2021-04-11gnu: librsync: Update to 2.3.2....* gnu/packages/rsync.scm (librsync): Update to 2.3.2. Tobias Geerinckx-Rice
2021-04-11gnu: Add python-pysctp....* gnu/packages/networking.scm(python-pysctp): New variable. Hartmut Goebel
2021-04-11gnu: lksctp-tools: Fix build of include file....* gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: New file. * gnu/local.mk[patches]: Add it. * gnu/packages/networking.scm(/lksctp-tools)[source]: Use this patch. Hartmut Goebel
2021-04-11gnu: gpodder: Update to 3.10.18....* gnu/packages/gpodder.scm (gpodder): Update to 3.10.18. [native-inputs]: Add python-pytest, python-pytest-cov, python-pytest-httpserver and which. [inputs]: Add python-requests. Pierre Langlois
2021-04-11gnu: Add python-pytest-httpserver....* gnu/packages/check.scm (python-pytest-httpserver): New variable. Pierre Langlois
2021-04-11gnu: scintilla: Update to 5.0.1....* gnu/packages/text-editors.scm (scintilla): Update to 5.0.1. Nicolas Goaziou
2021-04-11gnu: emacs-ivy-posframe: Update to 0.6.0....* gnu/packages/emacs-xyz.scm (emacs-ivy-posframe): Update to 0.6.0. Nicolas Goaziou
2021-04-11gnu: emacs-posframe: Update to 1.0.0....* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.0.0. Nicolas Goaziou
2021-04-11gnu: Add abook....* gnu/packages/mail.scm (abook): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Alexandru-Sergiu Marton
2021-04-11gnu: Add python-plumbum....* gnu/packages/python-xyz.scm (python-plumbum): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> LibreMiami
2021-04-11gnu: Add lagrange....* gnu/packages/web-browsers.scm (lagrange): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Alexander Krotov
2021-04-11gnu: Add emacs-ghq....* gnu/packages/emacs-xyz.scm (emacs-ghq): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Joseph LaFreniere
2021-04-11gnu: Add emacs-elfeed-protocol....* gnu/packages/emacs-xyz.scm (emacs-elfeed-protocol): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> nixo
2021-04-11gnu: Add emacs-mode-line-idle....* gnu/packages/emacs-xyz.scm (emacs-mode-line-idle): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Eugene Klimov via Guix-patches via
2021-04-11gnu: emacs-repl-toggle: Update to 0.7.1....* gnu/packages/emacs-xyz.scm (emacs-repl-toggle): Update to 0.7.1. [source]: Use Sourcehut repository. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Xinglu Chen
2021-04-11gnu: Add emacs-vertico....* gnu/packages/emacs-xyz.scm (emacs-vertico): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Xinglu Chen