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2024-12-18gnu: isc-dhcp: Fix cross compilation for arm32Christoph Buck
* gnu/packages/admin.scm (isc-dhcp): Fix cross compilation for arm32 Change-Id: I52a863d2cb44e81e26de3224a7c5f8c6d2420cc6 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-12-18gnu: python-pygpgme: Fix build.Danny Milosavljevic
* gnu/packages/gnupg.scm (python-pygpgme)[native-inputs]: Add python-setuptools, python-wheel. Change-Id: Ida614c2ddcf8b7f275496a2e56e35ada0eb7667b
2024-12-18gnu: perl-pdl: Clarify return value.Danny Milosavljevic
* gnu/packages/patches/pdl-2.019-glut-bitmap-fonts.patch: Modify. Change-Id: Ib32237ddde43cd0c743074372e2fb8cb2693f52e
2024-12-18gnu: glibc: Graft with fix for CVE-2024-2961.Maxim Cournoyer
* gnu/packages/base.scm (%glibc-patches): New variable. (glibc) [source]: Use it. [properties]: Mark CVE-2024-2961 as hidden (resolved). [replacement]: Add field to graft with... (glibc/fixed): ... this new package. Fixes: <https://issues.guix.gnu.org/70581> Change-Id: I6dd70b0e157283925824348f180c466c2f6387c9
2024-12-18gnu: openmpi-5: Streamline source and do not install HTML doc.Maxim Cournoyer
This reduces the installed package size by 63 MiB. * gnu/packages/mpi.scm (openmpi-5) [source]: Add modules, snippet fields. Change-Id: Ie3dc365a2e4e48dc4c385dd447d3c64b7db065ca
2024-12-18gnu: openpmix: Do not install HTML documentation.Maxim Cournoyer
This reduces the package size from 9 MiB to 5 MiB. * gnu/packages/parallel.scm (openpmix) [source]: Add snippet. Change-Id: I36e4a1e456225588df96f5eb70ed607505dae493
2024-12-18gnu: openpmix: Fix indentation.Maxim Cournoyer
* gnu/packages/parallel.scm (openpmix): Fix indentation. Change-Id: I05751408847343ac593e666afc5f1efbbef94a79
2024-12-18gnu: openpmix: Enable Python bindings.Maxim Cournoyer
* gnu/packages/parallel.scm (openpmix) [arguments] <configure-flags>: Add '--enable-python-bindings'. <phases>: Add set-LDFLAGS phase. [native-inputs]: Add python-cython. Change-Id: I6910ed9c3c7b47b3a76085b95b1f251286a48077
2024-12-18gnu: python-pyparted: Update to 3.13.0.Sharlatan Hellseher
* gnu/packages/disk.scm: Add pyproject. (python-pyparted): Update to 3.13.0, fix build. [propagated-inputs]: Remove python-six. [native-inputs]: Add python-pytest, python-setuptools, and python-wheel. Change-Id: I1f5e7ff6e49ed4c868f7bb3033a92d27020f4114
2024-12-18gnu: python-icontract: Add missing input.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-icontract) [native-inputs]: Add python-wheel. Change-Id: Ib4dac8d1a05536e09d80e9d102795f68238bfaef
2024-12-18gnu: python-vine: Fix build.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-vine) [arguments]<test-flags>: Skip 4 tests. [native-inputs]: Remove python-case. Change-Id: I4e8f359556bd97bf6d21a8ac7b7e4823e21043fb
2024-12-18gnu: python-textdistance: Update to 4.6.3.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-textdistance): Update to 4.6.3. Fix build. [build-system]: Swap to pyproejct-build-system. [arguments]<phases>: Remove 'delete-external-test. [propagated-inputs]: Add python-jellyfish, python-distance, python-levenshtein, python-pylev, python-pyxdameraulevenshtein, and python-rapidfuzz. [native-inputs]: Remove python-hypothesis, python-isort, python-pytest-runner, and python-tabulate; add python-pytest-xdist, python-setuptools, and python-wheel. Change-Id: I4dae8d535897a1444123ea22603079184435bb5f
2024-12-18gnu: Add python-distance.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-distance): New variable. Change-Id: I0c8d98f39d779fcbcb5ce37bf64db118dfc0b4e4
2024-12-18gnu: Add python-pyxdameraulevenshtein.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-pyxdameraulevenshtein): New variable. Change-Id: I33b3bc5ec63c014fcca8b10623be0f5e0cf1eb91
2024-12-18gnu: python-clintest: Update to 0.3.0.Sharlatan Hellseher
* gnu/packages/potassco.scm (python-clintest): Update to 0.3.0, fix build. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I22bd8019cc1b6f2d1a2c7fe40bfb98ad5679f9f1
2024-12-18gnu: python-clingox: Fix build, improve style.Sharlatan Hellseher
* gnu/packages/potassco.scm (python-clingox): Adjust indentation. [arguments]<test-flags>: Skip 3 tests. [native-inputs]: Add python-pytest, python-setuptools, and python-wheel. [description]: Start from a new line. Change-Id: I0a267df9f23e585ba7619fb8905024cbe17027a8
2024-12-18gnu: python-pyformlang: Add missing inputs.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-pyformlang) [native-inputs]: Add python-pytest, python-setuptools, and python-wheel. Change-Id: I27efca39faf59e83a735dba14029580c7c8b87e2
2024-12-18gnu: python-termcolor-1: Fix build.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-termcolor-1) [native-inputs]: Add python-setuptools and python-wheel. Change-Id: Idc247338aea624fd62a4d126451bb174d41c9fb6
2024-12-18gnu: python-healpy: Fix build.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-healpy) [native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ie86d1f152d26d08f5cf072721ba295b12ca808e2
2024-12-18gnu: python-pymarshal: Fix build.Sughosha
* gnu/packages/python-xyz.scm (python-pymarshal)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I6ad9ca15ab570b8c88136fc13bb6a6e14459094c Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-18gnu: python-mido: Fix build.Sughosha
* gnu/packages/python-xyz.scm (python-mido)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I387bf0b70bbd3e03d7042970794d9da4800418f9 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-17gnu: perl-pdl: Make printing text work with glut backend, too.Danny Milosavljevic
* gnu/packages/patches/pdl-2.019-glut-bitmap-fonts.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/perl-maths.scm (perl-pdl)[source]: Use it. Change-Id: I0331b1192d75a69831168d2fd634cadaa6260cd4
2024-12-17gnu: qmk: Add missing inputs.Ricardo Wurmus
* gnu/packages/firmware.scm (qmk)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ia6660c7c99e1d043d8cf9ea1fa108a4895c328db
2024-12-17gnu: python-milc: Add missing inputs.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-milc)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: I8711c8fff3f8cae5a875f0cf74ae049e3719ca80
2024-12-17gnu: python-rdflib: Update to 7.1.1.Ricardo Wurmus
* gnu/packages/rdf.scm (python-rdflib): Update to 7.1.1. [arguments]: Use #:test-flags; remove custom build phases. [native-inputs]: Add python-pytest-cov. [propagated-inputs]: Add python-lxml, python-networkx, and python-orjson; remove python-html5lib. Change-Id: If1a10cb359be8e838963edf72c7d1a5ee08b396a
2024-12-17gnu: python-islenska: Update to 1.0.3.Artyom V. Poptsov
* gnu/packages/python-xyz.scm (python-islenska): Update to 1.0.3. Change-Id: I053a53c7c215064d9dba3a2e91b20e6bc4225d2a
2024-12-17gnu: python-stsci-imagestats: Fix build.Danny Milosavljevic
* gnu/packages/astronomy.scm (python-stsci-imagestats)[native-inputs]: Add python-setuptools, python-wheel. Change-Id: I3a788e066cdbba59983b1cdb0e81c7dc5733d7a5
2024-12-17gnu: python-lsp-server: Update to 1.12.0, fixing build.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-lsp-server): Update to 1.12.0. [source]: Update URI. [arguments]: Via #:test-flags, reinstate test_pydocstyle_lint test and skip the test_jedi_completion_with_fuzzy_enabled one. Ignore conftest.py. [native-inputs]: Remove python-coverage and python-pytest-cov. Add python-setuptools-scm. Change-Id: I48eed0b0ecd3ca6ac187292620d75aba9090307f
2024-12-17gnu: python-yapf: Update to 0.43.0.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-yapf): Update to 0.43.0. [native-inputs]: Remove python-importlib-metadata. Change-Id: I0d168d157d9daae664c19282d4a5b60a27dd9dc3
2024-12-17gnu: python-rope: Fix build.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-rope) [native-inputs]: Add python-pip. Change-Id: I20d2c77b9f343c6012af9e7b33fe73fed78ddc18
2024-12-17gnu: c-blosc: Update home page URL.Maxim Cournoyer
* gnu/packages/compression.scm (c-blosc) [home-page]: Update URL. Change-Id: I72bb93a9d166294da991201b29f16a8f41f1f44e
2024-12-17gnu: python-nptyping: Update to 2.5.0.Maxim Cournoyer
This reinstates commit 843bec9a15eb3f3293ddfeefde97bde461ced7ee, with necessary changes for the test suite to pass. * gnu/packages/python-check.scm (python-nptyping): Update to 2.5.0. [arguments]: Add #:test-flags. [native-inputs]: Add python-feedparser, python-pandas, python-pytest Change-Id: I352cb042cfa11de43993ec3bdcbc0b3008750755
2024-12-17gnu: python-pytest-cython: Add python-wheel to native inputs.Maxim Cournoyer
* gnu/packages/python-check.scm (python-pytest-cython) [native-inputs]: Add python-wheel. Change-Id: I7557ccc6ef8fbb30cd3c7e89049a0089a8df94d6
2024-12-17gnu: python-pytest-cython: Remove extraneous python-nox native input.Maxim Cournoyer
* gnu/packages/python-check.scm (python-pytest-cython) [native-inputs]: Remove python-nox. Change-Id: I585b17d63e52e62fd7c633354b74e4ae6233f722
2024-12-17gnu: python-tox: Update to 4.8.0 and disable tests.Maxim Cournoyer
* gnu/packages/python-check.scm (python-tox): Update to 4.8.0. [build-system]: Switch to pyproject-build-system. [arguments]: Delete #:phases. Add #:test-flags. [propagated-inputs]: Remove python-py, python-six and python-toml. Add python-cachetools, python-chardet, python-colorama, python-platformdirs, python-pyproject-api and python-tomli. [native-inputs]: Remove python-pathlib2, python-pytest-freezegun, python-pytest-timeout, python-setuptools-scm. Add python-distlib, python-hatchling, python-hatch-vcs, python-psutil, python-pytest-mock, python-pytest-xdist and python-re-assert. Change-Id: I7c58649ac4c0fcb72e5009a7a2a06570e28d3eff
2024-12-17gnu: python-pandas-stubs: Update to 2.2.3.241126.Maxim Cournoyer
* gnu/packages/python-science.scm (python-pandas-stubs): Update to 2.2.3.241126. [arguments]: Ignore tests/test_io.py in #:test-flags. [native-inputs]: Replace python-sqlalchemy with python-sqlalchemy-2. Change-Id: If27b3a5b687ca230a209e8a8087a89802414912e
2024-12-17gnu: python-tables: Update to 3.10.1.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-tables): Update to 3.10.1. [source]: Update snippet. [arguments]: Delete FIXME, which no longer applies to reworked definition. Delete use-gcc phase. Delete build phase override. Add set-LD_LIBRARY_PATH phase. Honor TESTS? in check phase. [propagated-inputs]: Add python-blosc2 and python-typing-extensions. [inputs]: Add c-blosc2. Change-Id: Idfed15a617e51c8ec1593d9a35afdcfa132e0740
2024-12-17gnu: Add python-blosc2.Maxim Cournoyer
* gnu/packages/python-compression.scm (python-blosc2): New variable. Change-Id: Id83074efd08b03c09e4c620d3a92a57c0d6340d0
2024-12-17gnu: Add python-ndindex.Maxim Cournoyer
Adapted from <https://raw.githubusercontent.com/Blosc/python-blosc2/refs/heads/main/.guix/modules/python-blosc2-package.scm>. * gnu/packages/python-science.scm (python-ndindex): New variable. Co-authored-by: Ivan Vilata i Balaguer <ivan@selidor.net> Change-Id: I38fbcbd8859c2ddbfdd39e8d84a63b20deef75c4
2024-12-17gnu: Add c-blosc2.Maxim Cournoyer
Adapted from https://raw.githubusercontent.com/Blosc/c-blosc2/refs/heads/main/.guix/modules/c-blosc2-package.scm. * gnu/packages/compression.scm (c-blosc2): New variable. Change-Id: Ic0f11487e8d920dd31dfb009485c204fa1b575f7 Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Co-authored-by: Ivan Vilata i Balaguer <ivan@selidor.net>
2024-12-17gnu: python-sphinx-prompt: Update to 1.9.0.Maxim Cournoyer
* gnu/packages/sphinx.scm (python-sphinx-prompt): Update to 1.9.0. [source]: Switch to PyPI URL. [build-system]: Switch to pyproject-build-system. [arguments]: Delete #:phases. Add #:tests?. [native-inputs]: Remove python-pytest and python-sphinx. Add python-poetry-core. [propagated-inputs]: Add python-certify, python-docutils, python-idna, python-pygments, python-sphinx and python-urllib3. Change-Id: Iaa70e214594730d6eee983bfbd80cb05a35ebab7
2024-12-17gnu: python-numcodecs: Fix build.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-numcodecs) [arguments]<test-flags>: Skip 2 failing tests. Change-Id: Ia4c1e8af6063f53a2d3c921931c8d3b3f0674ca7
2024-12-17gnu: Add python-jsonpath-ng.Markku Korkeala
* gnu/packages/python-xyz.scm (python-jsonpath-ng): New variable. Change-Id: Ie7835850bc137f3bbaea19f01d42b01ba0f5458e Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-17gnu: cl-croatoan: Update to 0.3-2.4700557.Cage
* gnu/packages/lisp-xyz.scm (sbcl-croatoan): Update to 0.3-2.4700557. [source, home-page]: Switch to new URL. Change-Id: I692e2a5a5fef6d4278f21eb3991068c3e5f23567 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-12-16gnu: magic-wormhole: Update to 0.16.0.Artyom V. Poptsov
* gnu/packages/magic-wormhole.scm (magic-wormhole): Update to 0.16.0. [propagated-inputs]: Add python-attrs. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I8c627f1cf421ec26a3749962f937039bda85b542 Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-16gnu: python-spake2: Update to 0.9.Artyom V. Poptsov
* gnu/packages/python-crypto.scm (python-spake2): Update to 0.9. [propagated-inputs]: Add python-cryptography. Change-Id: I9122e657446cb92a7fd1325cdbed63f6ab73428f Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-16gnu: python-zipstream-ng: Fix build.Artyom V. Poptsov
* gnu/packages/python-compression.scm (python-zipstream-ng) [native-inputs]: Add "python-setuptools" and "python-wheel". Change-Id: Ifdcaeafd585500611a444a354c94c401d96bdd88 Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-16gnu: python-iterable-io: Fix build.Artyom V. Poptsov
* gnu/packages/python-xyz.scm (python-iterable-io) [native-inputs]: Add "python-setuptools" and "python-wheel". Change-Id: I08e8135178e0558239f39017bf8ca709a63205b6 Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-16gnu: magic-wormhole-transit-relay: Fix build.Artyom V. Poptsov
* gnu/packages/magic-wormhole.scm (magic-wormhole-transit-relay): Fix build. [native-inputs]: Add "python-setuptools" and "python-wheel". Sort alphabetically. Change-Id: Ibc1b611f2f0c4e5975d8e123001c5afced87a367 Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-12-16gnu: magic-wormhole-mailbox-server: Fix build.Artyom V. Poptsov
* gnu/packages/magic-wormhole.scm (magic-wormhole-mailbox-server): Fix build. [native-inputs]: Add "python-setuptools" and "python-wheel". Sort alphabetically. Change-Id: Id0af4aebbe3560a58483846d889955c2748ea4da Reviewed-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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