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2017-01-01gnu: Add xdot.Theodoros Foradis
* gnu/packages/graphviz.scm (xdot): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01gnu: python-ndg-httpsclient: Use pypi-uri.Leo Famulari
* gnu/packages/python.scm (python-ndg-httpsclient, python2-ndg-httpsclient) [source]: Use pypi-uri.
2017-01-01gnu: diffoscope: Embed tool references.Ricardo Wurmus
Fixes <http://bugs.gnu.org/25315>. * gnu/packages/package-management.scm (diffoscope)[inputs]: Add colordiff and vim. [arguments]: Add "embed-tool-references" build phase to embed references to "colordiff", "xxd", and "readelf".
2017-01-01gnu: mariadb: Update to 10.1.20.Alex Vong
* gnu/packages/databases.scm (mariadb): Update to 10.1.20. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01gnu: mysql: Update to 5.7.17.Alex Vong
* gnu/packages/databases.scm (mysql): Update to 5.7.17. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-01gnu: Add propeller-development-suite.Ricardo Wurmus
* gnu/packages/embedded.scm (propeller-development-suite): New variable.
2017-01-01gnu: Add spinsim.Ricardo Wurmus
* gnu/packages/embedded.scm (spinsim): New variable.
2017-01-01gnu: Add spin2cpp.Ricardo Wurmus
* gnu/packages/embedded.scm (spin2cpp): New variable.
2017-01-01gnu: Add propeller-load.Ricardo Wurmus
* gnu/packages/embedded.scm (propeller-load): New variable.
2017-01-01gnu: Add openspin.Ricardo Wurmus
* gnu/packages/embedded.scm (openspin): New variable.
2017-01-01gnu: Add propeller-toolchain.Ricardo Wurmus
* gnu/packages/embedded.scm (propeller-toolchain): New variable.
2017-01-01gnu: Add proplib.Ricardo Wurmus
* gnu/packages/embedded.scm (proplib): New variable.
2017-01-01gnu: Add propeller-gcc.Ricardo Wurmus
* gnu/packages/embedded.scm (propeller-gcc): New variable.
2017-01-01gnu: Add propeller-binutils.Ricardo Wurmus
* gnu/packages/embedded.scm (propeller-binutils): New variable.
2017-01-01gnu: Add dummy linker for propeller-elf.Ricardo Wurmus
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for propeller-elf.
2017-01-01gnu: clisp: Remove timestamps.Ricardo Wurmus
* gnu/packages/lisp.scm (clisp)[arguments]: Add "remove-timestamps" phase to remove "__DATE__" and "__TIME__".
2017-01-01gnu: clisp: Use modify-phases syntax.Ricardo Wurmus
* gnu/packages/lisp.scm (clisp)[arguments]: Use modify-phases syntax.
2017-01-01gnu: manaplus: Update to 1.6.12.24.Alex Kost
* gnu/packages/games.scm (manaplus): Update to 1.6.12.24.
2017-01-01gnu: python-dendropy: Update to 4.2.0.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0. [source]: Remove patch. (python2-dendropy)[source]: Use the same source as python-dendropy. * gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2017-01-01gnu: diamond: Update to 0.8.31.Ben Woodcroft
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.31.
2016-12-31gnu: nagios: Update to 4.2.4 [fixes CVE-2016-{9565,9566}].Ludovic Courtès
* gnu/packages/monitoring.scm (nagios): Update to 4.2.4. [native-inputs]: New field.
2016-12-31gnu: python-graphql-relay: Update to 0.4.5.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-graphql-relay): Update to 0.4.5.
2016-12-31gnu: python-freezegun: Update to 0.3.8.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-freezegun): Update to 0.3.8.
2016-12-31gnu: python-ply: Update to 3.9.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-ply): Update to 3.9. [source]: Use pypi-uri.
2016-12-31gnu: python-pyquery: Update to 1.2.17.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-pyquery): Update to 1.2.17.
2016-12-31gnu: python-click-log: Update to 0.1.8.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-click-log): Update to 0.1.8.
2016-12-31gnu: python-ndg-httpsclient: Update to 0.4.2.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-ndg-httpsclient): Update to 0.4.2.
2016-12-31gnu: python-ipykernel: Update to 4.5.2.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-ipykernel): Update to 4.5.2.
2016-12-31gnu: python-jupyter-core: Update to 4.2.1.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-jupyter-core): Update to 4.2.1.
2016-12-31gnu: python2-fastlmm: Update to 0.2.26.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.26.
2016-12-31gnu: python-pytz: Update to 2016.10.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-pytz): Update to 2016.10.
2016-12-31gnu: python-pyyaml: Update to 3.12.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-pyyaml): Update to 3.12. [source]: Use pypi-uri.
2016-12-31gnu: python-pygments: Update to 2.1.3.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-pygments): Update to 2.1.3.
2016-12-30gnu: tiled: Update to 0.18.0.Kei Kebreau
* gnu/packages/game-development.scm (tiled): Update to 0.18.0.
2016-12-31gnu: mc: Partially fix absolute file paths.ng0
Partially fixes <http://bugs.gnu.org/25273>. * gnu/packages/mc.scm (mc)[arguments]: Add new phase 'fix-absolutism. This substitutes absolute file paths with functional file paths. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-31gnu: pius: Update to 2.2.2-0.891687c.Troy Sankey
* gnu/packages/gnupg.scm (pius): Update to 2.2.2-0.891687c. [inputs]: Change GNUPG-2.0 to GNUPG (2.1). Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-30gnu: libtermkey: Update to 0.19.José Miguel Sánchez García
* gnu/packages/terminals.scm (libtermkey): Update to 0.19. Co-authored-by: Leo Famulari <leo@famulari.name>
2016-12-30gnu: libpng: Mention CVE-2016-10087.Leo Famulari
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: Rename to ... * gnu/packages/patches/libpng-CVE-2016-10087.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust. * gnu/packages/image.scm (libpng/fixed)[source]: Use renamed patch.
2016-12-30gnu: linux-libre@4.1: Update to 4.1.37.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.37.
2016-12-30gnu: multiqc: Update to 0.9.Ben Woodcroft
Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>. * gnu/packages/bioinformatics.scm (multiqc): Update to 0.9. [origin]: Add patch. * gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2016-12-29gnu: elogind: Enable ACL support.Chris Marusich
* gnu/packages/freedesktop.scm (elogind) [inputs]: Add acl. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-29gnu: mpd: Install systemd service files.Leo Famulari
* gnu/packages/mpd.scm (mpd)[arguments]: Add 'install-service-files' phase.
2016-12-29gnu: r-genomicfeatures: Update to 1.26.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2.
2016-12-29gnu: r-biostrings: Update to 2.42.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1.
2016-12-29gnu: r-limma: Update to 3.30.7.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7.
2016-12-29gnu: r-variantannotation: Update to 1.20.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2.
2016-12-29gnu: r-edger: Update to 3.16.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5.
2016-12-29gnu: r-genomeinfodb: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1.
2016-12-29gnu: r-iranges: Update to 2.8.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1.
2016-12-29gnu: r-s4vectors: Update to 0.12.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1.
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